Wall clock time and date at job start Tue Mar 31 2020 06:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46905 * 109.46980 * 65.00539 * 4 2 1 6 6 C 1.46899 * 110.99760 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.46922 * 324.99084 * 6 5 4 8 8 C 1.53004 * 109.46788 * 204.99790 * 6 5 4 9 9 C 1.50705 * 109.47207 * 64.99652 * 8 6 5 10 10 H 1.08000 * 119.99618 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00028 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99926 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47578 * 89.99932 * 13 11 9 15 15 H 1.48499 * 109.47125 * 210.00241 * 13 11 9 16 16 H 1.48506 * 109.47170 * 329.99895 * 13 11 9 17 17 C 1.50695 * 109.47880 * 84.99642 * 6 5 4 18 18 C 1.38237 * 119.99501 * 39.72267 * 17 6 5 19 19 C 1.38236 * 119.99823 * 179.78995 * 18 17 6 20 20 C 1.38239 * 120.00081 * 0.44540 * 19 18 17 21 21 C 1.38238 * 119.99556 * 359.80716 * 20 19 18 22 22 C 1.38230 * 120.00295 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 24 24 C 1.52997 * 109.47269 * 60.00164 * 23 2 1 25 25 C 1.53006 * 109.46997 * 179.97438 * 23 2 1 26 26 C 1.52997 * 109.47317 * 299.99820 * 23 2 1 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.00899 * 111.00107 * 56.04359 * 5 4 2 33 33 H 1.08998 * 109.47405 * 184.99387 * 8 6 5 34 34 H 1.09001 * 109.47213 * 304.99954 * 8 6 5 35 35 H 0.97001 * 120.00223 * 179.97438 * 12 11 9 36 36 H 1.08002 * 120.00652 * 0.02562 * 18 17 6 37 37 H 1.07997 * 120.00183 * 180.27069 * 19 18 17 38 38 H 1.07993 * 120.00327 * 179.83436 * 20 19 18 39 39 H 1.07997 * 120.00013 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.00380 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47140 * 59.99453 * 24 23 2 42 42 H 1.09001 * 109.47375 * 179.97438 * 24 23 2 43 43 H 1.09002 * 109.47497 * 299.99829 * 24 23 2 44 44 H 1.08996 * 109.47261 * 59.99820 * 25 23 2 45 45 H 1.09001 * 109.47377 * 180.02562 * 25 23 2 46 46 H 1.09000 * 109.46866 * 300.00212 * 25 23 2 47 47 H 1.09002 * 109.47153 * 60.00359 * 26 23 2 48 48 H 1.09001 * 109.46832 * 180.02562 * 26 23 2 49 49 H 1.08992 * 109.47303 * 299.99871 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6272 -3.6672 7 1 3.0884 -1.0988 -3.4741 8 6 2.2781 0.4074 -4.7839 9 6 3.3634 1.3863 -4.4164 10 1 3.8908 1.2812 -3.4797 11 6 3.6824 2.4165 -5.2754 12 7 4.6291 3.2711 -4.9544 13 14 2.7688 2.5994 -6.8944 14 1 1.5782 3.4646 -6.6960 15 1 3.6671 3.2171 -7.9026 16 1 2.3346 1.2618 -7.3716 17 6 1.1276 -1.6759 -4.0873 18 6 -0.2273 -1.4220 -3.9837 19 6 -1.1422 -2.3823 -4.3732 20 6 -0.7023 -3.5999 -4.8577 21 6 0.6526 -3.8557 -4.9565 22 6 1.5675 -2.8937 -4.5712 23 6 2.0399 -0.7212 1.2493 24 6 1.5299 -2.1637 1.2493 25 6 3.5700 -0.7218 1.2491 26 6 1.5299 0.0001 2.4985 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1264 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 1.9883 0.9873 -2.3966 33 1 2.5435 -0.0973 -5.7129 34 1 1.3371 0.9412 -4.9164 35 1 4.8538 3.9957 -5.5589 36 1 -0.5712 -0.4720 -3.6019 37 1 -2.2008 -2.1823 -4.2963 38 1 -1.4170 -4.3511 -5.1595 39 1 0.9964 -4.8067 -5.3354 40 1 2.6260 -3.0934 -4.6488 41 1 1.8933 -2.6775 0.3593 42 1 1.8935 -2.6777 2.1391 43 1 0.4399 -2.1637 1.2493 44 1 3.9338 0.3056 1.2488 45 1 3.9333 -1.2360 2.1388 46 1 3.9329 -1.2359 0.3591 47 1 0.4399 0.0001 2.4985 48 1 1.8936 -0.5135 3.3885 49 1 1.8933 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619845028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:21 Heat of formation + Delta-G solvation = -19.027743 kcal Electronic energy + Delta-G solvation = -23991.114855 eV Core-core repulsion = 20916.111457 eV Total energy + Delta-G solvation = -3075.003398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47476 -39.60891 -37.24418 -34.78530 -33.16547 -31.64295 -31.07633 -30.68934 -28.55530 -28.15668 -26.59396 -25.27542 -23.48401 -23.16071 -22.66077 -21.03404 -19.07474 -18.99826 -17.48202 -16.72441 -16.51606 -16.37257 -15.77827 -15.68408 -15.59739 -15.01965 -14.81935 -14.54722 -14.46882 -14.18329 -14.05879 -13.74024 -13.40589 -13.37284 -13.21559 -12.91478 -12.74788 -12.71522 -12.58781 -12.37994 -12.30496 -12.05355 -11.97363 -11.85833 -11.73060 -11.53479 -11.37187 -11.20959 -11.16656 -10.95368 -10.78176 -9.68175 -9.43747 -9.20163 -8.30847 -6.33965 0.59123 0.65932 1.33849 1.35398 1.46971 2.33949 3.00482 3.04577 3.38847 3.87475 3.89529 3.96805 4.10450 4.17764 4.25238 4.29774 4.41867 4.44511 4.56147 4.58744 4.68884 4.71071 4.78865 4.79155 4.82153 4.85751 4.88711 4.95909 5.03695 5.08341 5.11479 5.14192 5.17992 5.24201 5.25517 5.29908 5.31087 5.32243 5.39072 5.49160 5.58518 5.62596 5.70573 5.72478 5.75512 5.89334 6.21038 6.26561 6.39089 6.59961 6.71506 7.30489 8.84951 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.006044 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.031308 B = 4631.382877 C = 6589.986936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 H 0.050 0.950 4 C 0.072 3.928 5 N -0.672 5.672 6 C 0.146 3.854 7 H 0.023 0.977 8 C 0.001 3.999 9 C -0.521 4.521 10 H 0.037 0.963 11 C 0.015 3.985 12 N -0.945 5.945 13 Si 0.943 3.057 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.255 1.255 17 C -0.078 4.078 18 C -0.101 4.101 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.060 4.060 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.138 4.138 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.011 0.989 31 H 0.067 0.933 32 H 0.343 0.657 33 H 0.015 0.985 34 H 0.022 0.978 35 H 0.266 0.734 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 -13.325 9.297 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.058 4.058 5 N -0.304 5.304 6 C 0.036 3.964 7 H 0.041 0.959 8 C -0.037 4.037 9 C -0.559 4.559 10 H 0.055 0.945 11 C -0.183 4.183 12 N -0.585 5.585 13 Si 0.767 3.233 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.179 1.179 17 C -0.079 4.079 18 C -0.119 4.119 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.061 4.061 24 C -0.196 4.196 25 C -0.202 4.202 26 C -0.195 4.195 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.753 -13.442 9.211 20.091 hybrid contribution 1.492 0.938 -0.820 1.944 sum -10.261 -12.504 8.390 18.222 Atomic orbital electron populations 1.21729 0.93925 1.01749 1.01391 1.21081 0.97077 0.98123 0.92901 0.93145 1.22068 0.96264 0.97602 0.89817 1.60531 1.63130 1.06004 1.00689 1.20127 0.92659 0.92727 0.90884 0.95888 1.19587 0.95766 0.93782 0.94555 1.21247 1.18688 1.10960 1.04984 0.94501 1.25821 0.95579 0.95109 1.01787 1.70044 1.32584 1.17004 1.38880 0.85768 0.78776 0.79275 0.79479 1.19169 1.21058 1.17916 1.20042 0.95048 0.94300 0.98504 1.21066 0.92341 0.99821 0.98712 1.21438 1.00150 0.93896 0.99227 1.21416 0.95878 0.97528 0.99922 1.21318 0.93460 0.99418 1.00126 1.21197 1.00041 0.93813 1.00749 1.20499 0.94847 0.96062 0.94681 1.21918 1.01461 0.94755 1.01466 1.21950 0.95440 1.01243 1.01579 1.21877 1.01553 0.99746 0.96309 0.93143 0.92469 0.92076 0.97126 0.91476 0.83794 0.96717 0.95954 0.92537 0.86257 0.84253 0.83605 0.84124 0.86831 0.93656 0.91890 0.91780 0.93711 0.91473 0.93741 0.91623 0.91793 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.38 71.98 0.60 -2.62 16 2 C -0.07 -1.99 1.89 -10.79 -0.02 -2.01 16 3 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 4 C 0.07 2.31 4.15 86.30 0.36 2.67 16 5 N -0.67 -25.21 4.99 -495.45 -2.47 -27.68 16 6 C 0.15 5.95 2.19 44.17 0.10 6.05 16 7 H 0.02 1.01 7.66 -2.39 -0.02 1.00 16 8 C 0.00 0.03 3.62 29.85 0.11 0.14 16 9 C -0.52 -29.37 8.67 25.60 0.22 -29.15 16 10 H 0.04 2.27 7.73 -2.91 -0.02 2.25 16 11 C 0.01 0.85 5.47 84.65 0.46 1.31 16 12 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 13 Si 0.94 44.92 27.47 68.60 1.88 46.80 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 17 C -0.08 -2.76 4.71 -19.87 -0.09 -2.85 16 18 C -0.10 -3.24 9.33 22.27 0.21 -3.03 16 19 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 20 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 21 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 22 C -0.14 -4.40 9.67 22.27 0.22 -4.19 16 23 C -0.06 -1.36 0.57 -52.18 -0.03 -1.39 16 24 C -0.14 -2.83 7.77 71.98 0.56 -2.27 16 25 C -0.14 -3.50 8.13 71.98 0.59 -2.91 16 26 C -0.14 -2.64 8.12 71.98 0.58 -2.05 16 27 H 0.05 1.41 7.75 -2.39 -0.02 1.39 16 28 H 0.06 1.33 6.43 -2.39 -0.02 1.31 16 29 H 0.06 1.30 6.43 -2.39 -0.02 1.29 16 30 H 0.01 0.38 6.09 -2.39 -0.01 0.36 16 31 H 0.07 2.13 6.56 -2.39 -0.02 2.11 16 32 H 0.34 14.67 7.21 -89.69 -0.65 14.03 16 33 H 0.01 0.71 7.20 -2.39 -0.02 0.70 16 34 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.12 3.97 7.71 -2.91 -0.02 3.94 16 37 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.11 3.51 8.04 -2.91 -0.02 3.48 16 41 H 0.04 1.02 6.54 -2.39 -0.02 1.01 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.22 6.43 -2.39 -0.02 1.21 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.04 1.19 6.32 -2.39 -0.02 1.17 16 47 H 0.06 1.16 6.43 -2.39 -0.02 1.14 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -62.77 373.42 4.44 -58.34 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.20 Total: 31.97 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 4.53 Total: -51.16 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.17 Total: -85.95 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -62.77 4.44 -58.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619845028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.309 kcal (2) G-P(sol) polarization free energy of solvation -62.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds