Wall clock time and date at job start Tue Mar 31 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47080 * 2 1 4 4 C 1.52994 * 109.47237 * 119.99818 * 2 1 3 5 5 N 1.46897 * 109.47430 * 295.00037 * 4 2 1 6 6 C 1.46896 * 111.00314 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47229 * 325.00208 * 6 5 4 8 8 C 1.53001 * 109.47252 * 205.00070 * 6 5 4 9 9 C 1.50701 * 109.47232 * 64.99821 * 8 6 5 10 10 H 1.08001 * 119.99717 * 0.02562 * 9 8 6 11 11 C 1.37876 * 119.99813 * 179.97438 * 9 8 6 12 12 N 1.31510 * 120.00272 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99744 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47025 * 60.00075 * 13 11 9 15 15 H 1.48495 * 109.46903 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46719 * 300.00202 * 13 11 9 17 17 C 1.50703 * 109.47483 * 84.99935 * 6 5 4 18 18 C 1.38235 * 120.00292 * 220.00182 * 17 6 5 19 19 C 1.38230 * 119.99899 * 179.97438 * 18 17 6 20 20 C 1.38235 * 120.00326 * 359.95697 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99503 * 39.97475 * 17 6 5 23 23 C 1.53001 * 109.47185 * 240.00001 * 2 1 3 24 24 C 1.53000 * 109.46888 * 299.99834 * 23 2 1 25 25 C 1.52994 * 109.47183 * 59.99784 * 23 2 1 26 26 C 1.52997 * 109.47185 * 179.97438 * 23 2 1 27 27 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46932 * 299.99937 * 1 2 3 29 29 H 1.09000 * 109.47519 * 60.00088 * 1 2 3 30 30 H 1.09000 * 109.47550 * 174.99805 * 4 2 1 31 31 H 1.09000 * 109.47227 * 55.00068 * 4 2 1 32 32 H 1.00896 * 110.99878 * 56.04515 * 5 4 2 33 33 H 1.09007 * 109.47213 * 185.00060 * 8 6 5 34 34 H 1.08998 * 109.47120 * 304.99534 * 8 6 5 35 35 H 0.97001 * 120.00530 * 179.97438 * 12 11 9 36 36 H 1.08001 * 119.99730 * 359.97438 * 18 17 6 37 37 H 1.08000 * 120.00376 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 39 39 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00455 * 0.02562 * 22 17 6 41 41 H 1.09001 * 109.46901 * 60.00046 * 24 23 2 42 42 H 1.08999 * 109.46964 * 179.97438 * 24 23 2 43 43 H 1.08994 * 109.47285 * 300.00025 * 24 23 2 44 44 H 1.09003 * 109.46937 * 60.00090 * 25 23 2 45 45 H 1.08999 * 109.47360 * 180.02562 * 25 23 2 46 46 H 1.09001 * 109.47281 * 300.00367 * 25 23 2 47 47 H 1.09000 * 109.47519 * 59.99911 * 26 23 2 48 48 H 1.09001 * 109.47419 * 179.97438 * 26 23 2 49 49 H 1.09003 * 109.47080 * 299.99999 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.1248 -0.6270 3.6672 7 1 2.0808 -1.7079 3.5332 8 6 1.2359 -0.2225 4.8450 9 6 -0.1604 -0.7441 4.6229 10 1 -0.3907 -1.3081 3.7311 11 6 -1.1436 -0.5022 5.5588 12 7 -0.8630 0.1841 6.6449 13 14 -2.8743 -1.1493 5.2838 14 1 -2.8378 -2.6300 5.1763 15 1 -3.7369 -0.7566 6.4269 16 1 -3.4238 -0.5753 4.0293 17 6 3.5468 -0.2129 3.9456 18 6 4.4612 -1.1440 4.4015 19 6 5.7656 -0.7641 4.6564 20 6 6.1560 0.5465 4.4544 21 6 5.2419 1.4772 3.9971 22 6 3.9368 1.0979 3.7444 23 6 2.0400 -0.7213 -1.2492 24 6 1.5300 -2.1638 -1.2492 25 6 1.5300 -0.0001 -2.4985 26 6 3.5700 -0.7207 -1.2496 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7995 1.2056 31 1 1.6054 -1.7197 1.2952 32 1 0.6529 0.1793 2.4753 33 1 1.6390 -0.6439 5.7659 34 1 1.2096 0.8643 4.9238 35 1 -1.5548 0.3547 7.3032 36 1 4.1564 -2.1681 4.5587 37 1 6.4800 -1.4914 5.0130 38 1 7.1740 0.8443 4.6577 39 1 5.5467 2.5013 3.8397 40 1 3.2225 1.8253 3.3882 41 1 0.4400 -2.1637 -1.2492 42 1 1.8930 -2.6775 -2.1394 43 1 1.8933 -2.6775 -0.3592 44 1 1.8933 1.0276 -2.4985 45 1 1.8929 -0.5141 -3.3884 46 1 0.4400 0.0000 -2.4984 47 1 3.9337 -1.2342 -0.3596 48 1 3.9333 -1.2349 -2.1393 49 1 3.9329 0.3071 -1.2498 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619845029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:25 Heat of formation + Delta-G solvation = -8.486199 kcal Electronic energy + Delta-G solvation = -23949.061500 eV Core-core repulsion = 20874.515218 eV Total energy + Delta-G solvation = -3074.546282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.17207 -38.50475 -35.71410 -32.88345 -31.72660 -30.37410 -29.65879 -28.68915 -27.40043 -27.24287 -25.03902 -24.09712 -22.14811 -21.82154 -21.36642 -19.53667 -17.92530 -16.57770 -16.05617 -15.47822 -15.35654 -14.72668 -14.54060 -14.37317 -14.22456 -13.94212 -13.29394 -13.16152 -13.07047 -12.83588 -12.68904 -12.24513 -12.02151 -11.99033 -11.83344 -11.80161 -11.57179 -11.22977 -11.21394 -11.04876 -10.96385 -10.78041 -10.59131 -10.50182 -10.34219 -10.15817 -10.09992 -9.96573 -9.52896 -9.16750 -8.44159 -8.37872 -8.02715 -7.65906 -6.04934 -4.09044 1.90034 1.95423 3.28843 3.34402 3.35756 4.32671 4.41809 4.68847 4.85956 4.90378 5.09600 5.32071 5.35622 5.37206 5.43827 5.46966 5.49995 5.58780 5.67017 5.70416 5.73068 5.76785 5.82586 5.94762 5.99287 6.05167 6.06769 6.08948 6.12248 6.16611 6.21820 6.27183 6.32604 6.37531 6.46207 6.49197 6.59680 6.63096 6.73055 6.78283 6.95158 7.01809 7.26178 7.49483 7.57382 7.60850 7.93520 8.04614 8.27174 8.33390 8.96402 9.55199 11.05544 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.006592 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.119528 B = 4246.410078 C = 6791.731284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.076 4.076 3 H 0.075 0.925 4 C 0.062 3.938 5 N -0.681 5.681 6 C 0.127 3.873 7 H 0.038 0.962 8 C 0.029 3.971 9 C -0.525 4.525 10 H 0.052 0.948 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.087 4.087 23 C -0.063 4.063 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.142 4.142 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.357 0.643 33 H 0.022 0.978 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.048 0.952 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.039 -0.867 -13.420 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.095 4.095 3 H 0.093 0.907 4 C -0.067 4.067 5 N -0.315 5.315 6 C 0.017 3.983 7 H 0.056 0.944 8 C -0.008 4.008 9 C -0.564 4.564 10 H 0.070 0.930 11 C -0.139 4.139 12 N -0.527 5.527 13 Si 0.717 3.283 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.052 4.052 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.105 4.105 23 C -0.064 4.064 24 C -0.202 4.202 25 C -0.198 4.198 26 C -0.199 4.199 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.179 0.821 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.146 0.854 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.465 -0.368 -13.278 16.311 hybrid contribution -1.541 -1.152 0.097 1.926 sum 7.924 -1.520 -13.181 15.454 Atomic orbital electron populations 1.21978 0.95546 1.01774 1.01859 1.21124 0.95550 0.99777 0.93052 0.90660 1.22091 0.99927 0.94626 0.90059 1.60479 1.21499 1.49063 1.00471 1.20619 0.90281 0.95186 0.92182 0.94374 1.19242 0.92610 0.97716 0.91233 1.21082 0.94599 1.34908 1.05763 0.92972 1.24964 0.98738 0.95054 0.95135 1.69950 1.33689 1.39395 1.09662 0.86710 0.84558 0.79303 0.77756 1.20356 1.21256 1.20148 1.20222 0.95656 0.93472 0.95822 1.21040 0.93242 0.99411 1.00650 1.20959 0.96057 0.96118 1.01465 1.20958 0.99042 0.93775 1.01911 1.21121 0.94108 0.98891 1.00745 1.21045 0.95248 0.96297 0.97952 1.20514 0.95298 0.95457 0.95086 1.21976 1.01234 0.95640 1.01383 1.21908 1.01177 1.00012 0.96718 1.21918 0.94892 1.01693 1.01416 0.92795 0.91816 0.92903 0.91685 0.95767 0.82055 0.95992 0.95386 0.92835 0.86802 0.87028 0.87174 0.86959 0.85411 0.92408 0.93349 0.92358 0.92834 0.93219 0.92413 0.92265 0.93291 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.26 37.16 0.31 -1.77 16 2 C -0.08 -1.01 1.96 -90.62 -0.18 -1.19 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.06 0.97 4.22 -3.83 -0.02 0.96 16 5 N -0.68 -12.52 5.55 -107.96 -0.60 -13.12 16 6 C 0.13 2.60 2.19 -68.86 -0.15 2.44 16 7 H 0.04 0.81 7.66 -51.93 -0.40 0.41 16 8 C 0.03 0.73 4.55 -27.88 -0.13 0.61 16 9 C -0.53 -14.06 8.12 -34.44 -0.28 -14.34 16 10 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.05 -0.96 4.71 -104.62 -0.49 -1.45 16 18 C -0.12 -2.15 9.67 -39.59 -0.38 -2.53 16 19 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 20 C -0.14 -2.03 10.05 -39.58 -0.40 -2.42 16 21 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 22 C -0.09 -1.55 9.32 -39.58 -0.37 -1.92 16 23 C -0.06 -0.71 0.57 -154.51 -0.09 -0.80 16 24 C -0.15 -1.63 7.77 37.16 0.29 -1.34 16 25 C -0.14 -1.42 8.12 37.15 0.30 -1.12 16 26 C -0.14 -1.56 8.13 37.16 0.30 -1.26 16 27 H 0.05 0.73 6.43 -51.93 -0.33 0.39 16 28 H 0.06 0.96 6.68 -51.93 -0.35 0.62 16 29 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 30 H 0.06 1.03 6.03 -51.93 -0.31 0.71 16 31 H 0.02 0.40 6.62 -51.93 -0.34 0.05 16 32 H 0.36 7.12 5.46 -39.29 -0.21 6.91 16 33 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 36 H 0.11 1.86 8.04 -52.49 -0.42 1.43 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 2.32 7.72 -52.49 -0.41 1.92 16 41 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.70 6.54 -51.93 -0.34 0.36 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 47 H 0.06 0.70 6.32 -51.93 -0.33 0.37 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -28.03 374.77 -10.04 -38.06 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -8.63 Total: 7.91 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -2.18 Total: -29.23 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.14 Total: -38.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.03 -10.04 -38.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619845029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.578 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds