Wall clock time and date at job start Tue Mar 31 2020 06:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47080 * 2 1 4 4 C 1.52994 * 109.47237 * 119.99818 * 2 1 3 5 5 N 1.46897 * 109.47430 * 295.00037 * 4 2 1 6 6 C 1.46896 * 111.00314 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47229 * 325.00208 * 6 5 4 8 8 C 1.53001 * 109.47252 * 205.00070 * 6 5 4 9 9 C 1.50701 * 109.47232 * 64.99821 * 8 6 5 10 10 H 1.08001 * 119.99717 * 0.02562 * 9 8 6 11 11 C 1.37876 * 119.99813 * 179.97438 * 9 8 6 12 12 N 1.31510 * 120.00272 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99744 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47025 * 60.00075 * 13 11 9 15 15 H 1.48495 * 109.46903 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46719 * 300.00202 * 13 11 9 17 17 C 1.50703 * 109.47483 * 84.99935 * 6 5 4 18 18 C 1.38235 * 120.00292 * 220.00182 * 17 6 5 19 19 C 1.38230 * 119.99899 * 179.97438 * 18 17 6 20 20 C 1.38235 * 120.00326 * 359.95697 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99503 * 39.97475 * 17 6 5 23 23 C 1.53001 * 109.47185 * 240.00001 * 2 1 3 24 24 C 1.53000 * 109.46888 * 299.99834 * 23 2 1 25 25 C 1.52994 * 109.47183 * 59.99784 * 23 2 1 26 26 C 1.52997 * 109.47185 * 179.97438 * 23 2 1 27 27 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46932 * 299.99937 * 1 2 3 29 29 H 1.09000 * 109.47519 * 60.00088 * 1 2 3 30 30 H 1.09000 * 109.47550 * 174.99805 * 4 2 1 31 31 H 1.09000 * 109.47227 * 55.00068 * 4 2 1 32 32 H 1.00896 * 110.99878 * 56.04515 * 5 4 2 33 33 H 1.09007 * 109.47213 * 185.00060 * 8 6 5 34 34 H 1.08998 * 109.47120 * 304.99534 * 8 6 5 35 35 H 0.97001 * 120.00530 * 179.97438 * 12 11 9 36 36 H 1.08001 * 119.99730 * 359.97438 * 18 17 6 37 37 H 1.08000 * 120.00376 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 39 39 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00455 * 0.02562 * 22 17 6 41 41 H 1.09001 * 109.46901 * 60.00046 * 24 23 2 42 42 H 1.08999 * 109.46964 * 179.97438 * 24 23 2 43 43 H 1.08994 * 109.47285 * 300.00025 * 24 23 2 44 44 H 1.09003 * 109.46937 * 60.00090 * 25 23 2 45 45 H 1.08999 * 109.47360 * 180.02562 * 25 23 2 46 46 H 1.09001 * 109.47281 * 300.00367 * 25 23 2 47 47 H 1.09000 * 109.47519 * 59.99911 * 26 23 2 48 48 H 1.09001 * 109.47419 * 179.97438 * 26 23 2 49 49 H 1.09003 * 109.47080 * 299.99999 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.1248 -0.6270 3.6672 7 1 2.0808 -1.7079 3.5332 8 6 1.2359 -0.2225 4.8450 9 6 -0.1604 -0.7441 4.6229 10 1 -0.3907 -1.3081 3.7311 11 6 -1.1436 -0.5022 5.5588 12 7 -0.8630 0.1841 6.6449 13 14 -2.8743 -1.1493 5.2838 14 1 -2.8378 -2.6300 5.1763 15 1 -3.7369 -0.7566 6.4269 16 1 -3.4238 -0.5753 4.0293 17 6 3.5468 -0.2129 3.9456 18 6 4.4612 -1.1440 4.4015 19 6 5.7656 -0.7641 4.6564 20 6 6.1560 0.5465 4.4544 21 6 5.2419 1.4772 3.9971 22 6 3.9368 1.0979 3.7444 23 6 2.0400 -0.7213 -1.2492 24 6 1.5300 -2.1638 -1.2492 25 6 1.5300 -0.0001 -2.4985 26 6 3.5700 -0.7207 -1.2496 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7995 1.2056 31 1 1.6054 -1.7197 1.2952 32 1 0.6529 0.1793 2.4753 33 1 1.6390 -0.6439 5.7659 34 1 1.2096 0.8643 4.9238 35 1 -1.5548 0.3547 7.3032 36 1 4.1564 -2.1681 4.5587 37 1 6.4800 -1.4914 5.0130 38 1 7.1740 0.8443 4.6577 39 1 5.5467 2.5013 3.8397 40 1 3.2225 1.8253 3.3882 41 1 0.4400 -2.1637 -1.2492 42 1 1.8930 -2.6775 -2.1394 43 1 1.8933 -2.6775 -0.3592 44 1 1.8933 1.0276 -2.4985 45 1 1.8929 -0.5141 -3.3884 46 1 0.4400 0.0000 -2.4984 47 1 3.9337 -1.2342 -0.3596 48 1 3.9333 -1.2349 -2.1393 49 1 3.9329 0.3071 -1.2498 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619845029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:24 Heat of formation + Delta-G solvation = -21.507002 kcal Electronic energy + Delta-G solvation = -23949.626124 eV Core-core repulsion = 20874.515218 eV Total energy + Delta-G solvation = -3075.110907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46734 -39.62660 -37.20964 -34.83282 -33.11036 -31.64998 -30.91050 -30.34476 -28.48181 -28.15872 -26.60132 -25.51684 -23.67683 -23.25592 -22.55509 -21.05141 -18.97026 -18.56083 -17.46414 -16.93017 -16.64599 -16.36828 -15.97186 -15.66003 -15.29050 -14.93074 -14.66821 -14.52520 -14.34522 -14.22840 -14.06976 -13.71606 -13.49371 -13.16666 -13.09553 -12.85117 -12.75694 -12.70209 -12.60547 -12.47228 -12.43190 -12.12427 -12.00269 -11.95621 -11.74980 -11.52568 -11.27706 -11.15471 -11.09288 -10.96660 -10.58597 -9.68384 -9.41799 -9.18688 -8.20139 -6.31872 0.59866 0.66025 1.38609 1.40467 1.48265 2.38709 3.02560 3.11437 3.42163 3.88911 3.93011 3.94215 4.12281 4.17375 4.28895 4.32540 4.39077 4.42210 4.55478 4.57432 4.68176 4.78933 4.79661 4.82784 4.84741 4.87707 4.91200 4.95982 5.01901 5.10070 5.12432 5.13322 5.21383 5.23513 5.28344 5.30201 5.31497 5.41576 5.47265 5.53352 5.62359 5.67818 5.68336 5.73276 5.80439 5.90670 6.16465 6.27279 6.43651 6.68163 6.82148 7.36961 8.90917 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.006592 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.119528 B = 4246.410078 C = 6791.731284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 H 0.069 0.931 4 C 0.070 3.930 5 N -0.678 5.678 6 C 0.142 3.858 7 H 0.026 0.974 8 C 0.043 3.957 9 C -0.534 4.534 10 H 0.058 0.942 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.958 3.042 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.077 4.077 18 C -0.141 4.141 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.130 4.130 22 C -0.104 4.104 23 C -0.059 4.059 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.140 4.140 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.346 0.654 33 H -0.012 1.012 34 H -0.002 1.002 35 H 0.263 0.737 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -1.203 -15.226 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 H 0.087 0.913 4 C -0.059 4.059 5 N -0.312 5.312 6 C 0.032 3.968 7 H 0.044 0.956 8 C 0.005 3.995 9 C -0.572 4.572 10 H 0.076 0.924 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.783 3.217 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.189 1.189 17 C -0.078 4.078 18 C -0.160 4.160 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.123 4.123 23 C -0.060 4.060 24 C -0.201 4.201 25 C -0.195 4.195 26 C -0.197 4.197 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.167 0.833 33 H 0.006 0.994 34 H 0.016 0.984 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.575 -0.711 -15.105 18.453 hybrid contribution -1.781 -1.030 0.682 2.168 sum 8.794 -1.741 -14.423 16.982 Atomic orbital electron populations 1.21951 0.95579 1.01639 1.01702 1.21066 0.95443 0.99343 0.92937 0.91295 1.22095 0.99819 0.94164 0.89865 1.60522 1.20506 1.49365 1.00766 1.20276 0.90993 0.94357 0.91210 0.95645 1.18998 0.93230 0.95314 0.91929 1.21410 0.95414 1.34530 1.05814 0.92414 1.25860 1.03172 0.95227 0.94772 1.70094 1.35111 1.40882 1.10709 0.85605 0.79216 0.78876 0.78006 1.19565 1.21017 1.18879 1.20118 0.94864 0.94630 0.98151 1.21198 0.94328 0.99301 1.01136 1.21329 0.95421 0.97297 1.00217 1.21409 1.00494 0.93095 0.99906 1.21432 0.93041 1.00567 0.99780 1.21037 0.96481 0.95610 0.99155 1.20488 0.95578 0.95410 0.94516 1.21964 1.01139 0.95515 1.01506 1.21878 1.01253 1.00082 0.96292 1.21894 0.94510 1.01739 1.01556 0.92899 0.94023 0.90958 0.91756 0.96559 0.83331 0.99389 0.98387 0.92794 0.86768 0.83922 0.83434 0.84331 0.86836 0.92545 0.91730 0.93724 0.92635 0.91803 0.92277 0.93558 0.91685 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.26 71.98 0.59 -3.45 16 2 C -0.07 -1.82 1.96 -10.80 -0.02 -1.84 16 3 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.07 2.22 4.22 86.30 0.36 2.59 16 5 N -0.68 -26.25 5.55 -495.47 -2.75 -29.00 16 6 C 0.14 6.13 2.19 44.17 0.10 6.23 16 7 H 0.03 1.14 7.66 -2.39 -0.02 1.13 16 8 C 0.04 2.28 4.55 29.85 0.14 2.42 16 9 C -0.53 -29.69 8.12 25.60 0.21 -29.48 16 10 H 0.06 3.08 7.49 -2.91 -0.02 3.06 16 11 C 0.01 0.47 5.46 84.66 0.46 0.93 16 12 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 13 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 C -0.08 -2.99 4.71 -19.87 -0.09 -3.09 16 18 C -0.14 -4.89 9.67 22.27 0.22 -4.67 16 19 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 20 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 21 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 22 C -0.10 -3.79 9.32 22.27 0.21 -3.58 16 23 C -0.06 -1.26 0.57 -52.18 -0.03 -1.29 16 24 C -0.14 -3.03 7.77 71.98 0.56 -2.47 16 25 C -0.14 -2.45 8.12 71.98 0.58 -1.86 16 26 C -0.14 -2.86 8.13 71.98 0.59 -2.27 16 27 H 0.05 1.41 6.43 -2.39 -0.02 1.39 16 28 H 0.04 1.28 6.68 -2.39 -0.02 1.27 16 29 H 0.07 1.63 6.43 -2.39 -0.02 1.61 16 30 H 0.06 2.07 6.03 -2.39 -0.01 2.06 16 31 H 0.02 0.55 6.62 -2.39 -0.02 0.53 16 32 H 0.35 14.55 5.46 -89.70 -0.49 14.06 16 33 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 34 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.11 3.82 8.04 -2.91 -0.02 3.79 16 37 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.11 4.34 7.72 -2.91 -0.02 4.32 16 41 H 0.06 1.19 6.43 -2.39 -0.02 1.18 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.04 1.05 6.54 -2.39 -0.02 1.03 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.04 6.43 -2.39 -0.02 1.02 16 47 H 0.05 1.06 6.32 -2.39 -0.02 1.04 16 48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -62.77 374.77 4.51 -58.26 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.41 Total: 32.88 kcal Atomic # 6 Polarization: -56.50 SS G_CDS: 4.54 Total: -51.96 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.46 Total: -85.11 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.77 4.51 -58.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619845029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.752 kcal (2) G-P(sol) polarization free energy of solvation -62.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds