Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47093 * 2 1 4 4 C 1.52996 * 109.47138 * 119.99880 * 2 1 3 5 5 N 1.46903 * 109.47400 * 295.00162 * 4 2 1 6 6 C 1.46896 * 110.99908 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47220 * 35.00039 * 6 5 4 8 8 C 1.52997 * 109.46848 * 154.99970 * 6 5 4 9 9 C 1.50698 * 109.47721 * 294.99917 * 8 6 5 10 10 H 1.08008 * 119.99163 * 0.02562 * 9 8 6 11 11 C 1.37869 * 120.00614 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99741 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47239 * 89.99935 * 13 11 9 15 15 H 1.48495 * 109.47323 * 209.99675 * 13 11 9 16 16 H 1.48505 * 109.47112 * 330.00112 * 13 11 9 17 17 C 1.50701 * 109.47239 * 274.99983 * 6 5 4 18 18 C 1.38238 * 119.99612 * 319.72864 * 17 6 5 19 19 C 1.38236 * 119.99607 * 179.81010 * 18 17 6 20 20 C 1.38235 * 120.00116 * 0.39532 * 19 18 17 21 21 C 1.38233 * 119.99985 * 359.86014 * 20 19 18 22 22 C 1.38223 * 120.00108 * 140.00251 * 17 6 5 23 23 C 1.53001 * 109.47289 * 240.00239 * 2 1 3 24 24 C 1.53000 * 109.46997 * 300.00218 * 23 2 1 25 25 C 1.53000 * 109.47024 * 59.99566 * 23 2 1 26 26 C 1.52994 * 109.47155 * 179.97438 * 23 2 1 27 27 H 1.08996 * 109.47050 * 300.00234 * 1 2 3 28 28 H 1.09005 * 109.46886 * 59.99756 * 1 2 3 29 29 H 1.08994 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47245 * 175.00242 * 4 2 1 31 31 H 1.09001 * 109.46886 * 55.00126 * 4 2 1 32 32 H 1.00895 * 110.99553 * 303.95261 * 5 4 2 33 33 H 1.09000 * 109.47325 * 54.99882 * 8 6 5 34 34 H 1.09008 * 109.47017 * 174.99792 * 8 6 5 35 35 H 0.97006 * 119.99397 * 180.02562 * 12 11 9 36 36 H 1.08001 * 120.00192 * 359.97438 * 18 17 6 37 37 H 1.08000 * 120.00146 * 180.23159 * 19 18 17 38 38 H 1.08002 * 120.00422 * 179.83385 * 20 19 18 39 39 H 1.08000 * 120.00342 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00341 * 359.97438 * 22 17 6 41 41 H 1.08997 * 109.47326 * 59.99682 * 24 23 2 42 42 H 1.08998 * 109.47008 * 180.02562 * 24 23 2 43 43 H 1.09005 * 109.46603 * 299.99970 * 24 23 2 44 44 H 1.09007 * 109.47026 * 60.00442 * 25 23 2 45 45 H 1.09004 * 109.46934 * 179.97438 * 25 23 2 46 46 H 1.08997 * 109.47341 * 300.00343 * 25 23 2 47 47 H 1.08996 * 109.47282 * 59.99723 * 26 23 2 48 48 H 1.09004 * 109.47518 * 180.02562 * 26 23 2 49 49 H 1.09007 * 109.47255 * 299.99779 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0374 2.4457 6 6 2.1248 -0.6271 3.6672 7 1 3.0883 -1.0988 3.4741 8 6 2.2780 0.4074 4.7839 9 6 3.3632 1.3863 4.4166 10 1 3.8906 1.2813 3.4799 11 6 3.6828 2.4159 5.2760 12 7 3.0402 2.5440 6.4163 13 14 5.0285 3.6289 4.8209 14 1 4.4366 4.7677 4.0738 15 1 5.6796 4.1326 6.0568 16 1 6.0392 2.9506 3.9701 17 6 1.1274 -1.6759 4.0873 18 6 -0.2275 -1.4177 3.9941 19 6 -1.1424 -2.3811 4.3758 20 6 -0.7025 -3.5996 4.8582 21 6 0.6524 -3.8557 4.9563 22 6 1.5673 -2.8937 4.5710 23 6 2.0401 -0.7212 -1.2493 24 6 1.5300 -2.1637 -1.2493 25 6 1.5300 0.0001 -2.4985 26 6 3.5700 -0.7206 -1.2496 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1264 -0.7994 1.2056 31 1 1.6054 -1.7198 1.2951 32 1 1.9882 0.9873 2.3967 33 1 1.3369 0.9412 4.9163 34 1 2.5432 -0.0974 5.7129 35 1 3.2648 3.2687 7.0208 36 1 -0.5712 -0.4644 3.6207 37 1 -2.2010 -2.1809 4.2996 38 1 -1.4173 -4.3513 5.1589 39 1 0.9961 -4.8075 5.3336 40 1 2.6258 -3.0939 4.6475 41 1 0.4401 -2.1637 -1.2493 42 1 1.8938 -2.6776 -2.1391 43 1 1.8934 -2.6775 -0.3593 44 1 1.8933 1.0278 -2.4985 45 1 1.8938 -0.5135 -3.3885 46 1 0.4400 0.0000 -2.4985 47 1 3.9337 -1.2341 -0.3596 48 1 3.9335 -1.2340 -2.1398 49 1 3.9330 0.3072 -1.2498 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619845030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -8.830582 kcal Electronic energy + Delta-G solvation = -23953.668645 eV Core-core repulsion = 20879.107429 eV Total energy + Delta-G solvation = -3074.561216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.15486 -38.48785 -35.70873 -32.87169 -31.67193 -30.36882 -29.78535 -28.63605 -27.39996 -27.23919 -25.02333 -23.95516 -22.15114 -21.82595 -21.46093 -19.55430 -17.95548 -16.60721 -16.05737 -15.43900 -15.04403 -14.81394 -14.48208 -14.42181 -14.31326 -13.94697 -13.57610 -13.10503 -12.95706 -12.73454 -12.62770 -12.16878 -12.02721 -12.00773 -11.87317 -11.76492 -11.58821 -11.21740 -11.19359 -11.03413 -10.98658 -10.75074 -10.59824 -10.49230 -10.39146 -10.12860 -10.11441 -9.96634 -9.54567 -9.15469 -8.44341 -8.37954 -8.02744 -7.64370 -6.05182 -4.09103 1.89973 1.95372 3.27793 3.34979 3.36933 4.32602 4.41816 4.68217 4.86917 4.89855 5.11519 5.31771 5.34408 5.36471 5.42471 5.48158 5.52933 5.63183 5.67690 5.70413 5.75056 5.78186 5.82806 5.94809 6.00305 6.06428 6.07723 6.09746 6.14530 6.18755 6.21191 6.28647 6.32099 6.35200 6.48438 6.52627 6.59620 6.66073 6.75684 6.77966 6.95131 7.01644 7.25892 7.49212 7.57254 7.60965 7.93454 8.04200 8.26307 8.32968 8.96561 9.55261 11.05341 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.006439 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.339886 B = 4347.663783 C = 6730.953864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 H 0.067 0.933 4 C 0.063 3.937 5 N -0.678 5.678 6 C 0.128 3.872 7 H 0.038 0.962 8 C 0.029 3.971 9 C -0.524 4.524 10 H 0.053 0.947 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.889 3.111 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.051 4.051 18 C -0.086 4.086 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.064 4.064 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.145 4.145 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.356 0.644 33 H 0.028 0.972 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 -9.346 -12.537 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.067 4.067 5 N -0.311 5.311 6 C 0.018 3.982 7 H 0.056 0.944 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.140 4.140 12 N -0.527 5.527 13 Si 0.717 3.283 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.051 4.051 18 C -0.105 4.105 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.064 4.064 24 C -0.200 4.200 25 C -0.198 4.198 26 C -0.202 4.202 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.609 -9.494 -12.338 16.547 hybrid contribution 1.773 0.850 -0.098 1.969 sum -3.836 -8.644 -12.435 15.623 Atomic orbital electron populations 1.21803 0.94900 1.01441 1.01432 1.21121 0.96394 0.99064 0.93004 0.91486 1.22097 0.97029 0.97655 0.89898 1.60417 1.63844 1.06603 1.00271 1.20612 0.91960 0.93740 0.91888 0.94402 1.19242 0.97533 0.92042 0.91983 1.21119 1.19220 1.11494 1.04416 0.92919 1.24968 0.96354 0.97673 0.94960 1.69969 1.41164 1.31854 1.09730 0.86641 0.82166 0.81555 0.77910 1.20583 1.21233 1.20007 1.20214 0.95039 0.93913 0.95968 1.21037 0.92484 0.99127 0.97813 1.21117 0.99148 0.94204 1.00407 1.20957 0.95483 0.97341 1.01911 1.20961 0.93388 0.98953 1.01310 1.21039 0.99268 0.93714 1.00333 1.20523 0.95226 0.95535 0.95133 1.21951 1.01173 0.95545 1.01307 1.21909 1.01152 1.00032 0.96708 1.21951 0.94988 1.01765 1.01504 0.91383 0.93754 0.93107 0.95669 0.91794 0.82297 0.95376 0.96018 0.92908 0.85423 0.86979 0.87190 0.87042 0.86822 0.92382 0.93412 0.92429 0.92868 0.93236 0.92377 0.92204 0.93230 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.38 37.16 0.31 -1.45 16 2 C -0.08 -1.01 1.89 -90.62 -0.17 -1.19 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.06 0.96 4.15 -3.82 -0.02 0.95 16 5 N -0.68 -12.25 5.01 -107.95 -0.54 -12.80 16 6 C 0.13 2.58 2.19 -68.87 -0.15 2.43 16 7 H 0.04 0.80 7.66 -51.93 -0.40 0.40 16 8 C 0.03 0.73 4.55 -27.89 -0.13 0.60 16 9 C -0.52 -14.00 8.12 -34.44 -0.28 -14.28 16 10 H 0.05 1.37 7.49 -52.48 -0.39 0.97 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.05 -0.94 4.71 -104.63 -0.49 -1.43 16 18 C -0.09 -1.52 9.32 -39.58 -0.37 -1.89 16 19 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 20 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 21 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 22 C -0.12 -2.14 9.67 -39.59 -0.38 -2.53 16 23 C -0.06 -0.72 0.57 -154.51 -0.09 -0.81 16 24 C -0.14 -1.55 7.77 37.16 0.29 -1.26 16 25 C -0.14 -1.43 8.12 37.16 0.30 -1.13 16 26 C -0.14 -1.66 8.13 37.15 0.30 -1.36 16 27 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 28 H 0.04 0.50 6.43 -51.93 -0.33 0.17 16 29 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 30 H 0.03 0.41 6.09 -51.93 -0.32 0.09 16 31 H 0.06 1.01 6.56 -51.93 -0.34 0.66 16 32 H 0.36 7.04 7.21 -39.29 -0.28 6.76 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.13 2.29 7.73 -52.49 -0.41 1.89 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.85 8.04 -52.49 -0.42 1.43 16 41 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 47 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -27.92 377.05 -10.06 -37.98 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.75 Total: 7.26 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -2.16 Total: -28.88 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.20 Total: -38.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.92 -10.06 -37.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619845030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.147 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds