Wall clock time and date at job start Tue Mar 31 2020 06:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46857 * 2 1 4 4 C 1.53003 * 109.46759 * 240.00536 * 2 1 3 5 5 C 1.50693 * 109.47149 * 174.99655 * 4 2 1 6 6 H 1.08008 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00532 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00564 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99479 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46834 * 90.00077 * 9 7 5 11 11 H 1.48504 * 109.47203 * 209.99898 * 9 7 5 12 12 H 1.48499 * 109.47520 * 330.00342 * 9 7 5 13 13 S 1.81391 * 109.47331 * 120.00611 * 2 1 3 14 14 C 1.76198 * 102.99890 * 289.20050 * 13 2 1 15 15 C 1.38931 * 120.07127 * 354.27902 * 14 13 2 16 16 C 1.38103 * 119.94465 * 179.72453 * 15 14 13 17 17 C 1.38402 * 120.08788 * 359.97438 * 16 15 14 18 18 Cl 1.73599 * 119.93074 * 179.97438 * 17 16 15 19 19 C 1.38388 * 120.14258 * 0.02955 * 17 16 15 20 20 C 1.38195 * 120.04891 * 359.94851 * 19 17 16 21 21 Cl 1.73607 * 120.03850 * 180.02562 * 20 19 17 22 22 H 1.08996 * 109.46900 * 174.44811 * 1 2 3 23 23 H 1.08998 * 109.46792 * 294.44303 * 1 2 3 24 24 H 1.08995 * 109.47323 * 54.44334 * 1 2 3 25 25 H 1.09002 * 109.47330 * 295.00082 * 4 2 1 26 26 H 1.09004 * 109.47369 * 54.99933 * 4 2 1 27 27 H 0.96996 * 119.99948 * 180.02562 * 8 7 5 28 28 H 1.07997 * 120.02733 * 359.75578 * 15 14 13 29 29 H 1.07997 * 119.95565 * 180.02562 * 16 15 14 30 30 H 1.07994 * 119.97465 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5418 -0.6148 -1.3130 6 1 4.0790 -0.0861 -0.5394 7 6 4.2304 -1.1933 -2.3580 8 7 5.5411 -1.1009 -2.4133 9 14 3.3014 -2.1096 -3.6949 10 1 2.9397 -1.1652 -4.7824 11 1 4.1603 -3.1900 -4.2429 12 1 2.0659 -2.7018 -3.1223 13 16 2.1348 -0.8552 1.4809 14 6 1.7346 0.2678 2.7783 15 6 1.2111 1.5194 2.4789 16 6 0.8931 2.3954 3.4981 17 6 1.0946 2.0279 4.8171 18 17 0.6939 3.1325 6.0950 19 6 1.6158 0.7821 5.1195 20 6 1.9357 -0.0992 4.1042 21 17 2.5890 -1.6622 4.4839 22 1 -0.3633 -1.0228 -0.0994 23 1 -0.3633 0.4252 0.9356 24 1 -0.3634 0.5976 -0.8360 25 1 1.7516 -1.7714 -1.2058 26 1 1.6053 -0.2616 -2.1371 27 1 6.0253 -1.5076 -3.1488 28 1 1.0526 1.8069 1.4500 29 1 0.4858 3.3682 3.2655 30 1 1.7724 0.4982 6.1496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882686.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:18 Heat of formation + Delta-G solvation = -3.290752 kcal Electronic energy + Delta-G solvation = -15870.396196 eV Core-core repulsion = 13036.053352 eV Total energy + Delta-G solvation = -2834.342845 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.26728 -36.74649 -36.27506 -34.93494 -32.31294 -31.05222 -30.67557 -28.12885 -23.37230 -23.04380 -22.95724 -20.56814 -17.91330 -16.85239 -16.58601 -15.92623 -15.24852 -14.80548 -14.38513 -14.09633 -13.95624 -13.10606 -12.80248 -12.62706 -12.41559 -12.26990 -12.06470 -11.96907 -11.36672 -11.19458 -11.07957 -11.03713 -10.92676 -10.50511 -10.08582 -9.81181 -9.56293 -9.39446 -9.28305 -8.96659 -8.61566 -7.00313 -6.10497 -4.10225 0.87449 1.01919 1.79248 1.82079 2.35778 2.91665 3.24237 3.33099 3.33236 3.34308 4.37471 4.59106 4.84042 5.11679 5.20568 5.22734 5.32089 5.41760 5.56055 5.69321 5.72747 5.95148 6.01621 6.06238 6.26082 6.35908 6.43616 6.88699 7.05355 7.61461 8.42448 8.95055 9.49421 11.02128 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.004313 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.712947 B = 6489.987973 C = 6977.928445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 H 0.090 0.910 4 C 0.004 3.996 5 C -0.524 4.524 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.265 1.265 13 S -0.027 6.027 14 C -0.075 4.075 15 C -0.120 4.120 16 C -0.083 4.083 17 C -0.048 4.048 18 Cl -0.071 7.071 19 C -0.082 4.082 20 C -0.024 4.024 21 Cl -0.046 7.046 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 5.099 13.510 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 H 0.108 0.892 4 C -0.034 4.034 5 C -0.562 4.562 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.190 1.190 13 S 0.225 5.775 14 C -0.190 4.190 15 C -0.146 4.146 16 C -0.104 4.104 17 C -0.079 4.079 18 Cl -0.042 7.042 19 C -0.103 4.103 20 C -0.059 4.059 21 Cl -0.017 7.017 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.163 0.837 29 H 0.155 0.845 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.588 3.805 13.414 17.507 hybrid contribution -0.848 0.786 -0.685 1.343 sum -11.435 4.590 12.729 17.716 Atomic orbital electron populations 1.22217 0.94380 1.02959 1.01562 1.23661 0.96865 1.02867 0.96814 0.89179 1.19490 0.98162 0.95619 0.90172 1.21095 0.89041 1.35992 1.10102 0.90083 1.24963 0.94691 0.95626 0.97681 1.69896 1.06505 1.44866 1.32113 0.86889 0.80387 0.80184 0.82537 1.20221 1.21184 1.18986 1.86341 1.72013 1.23678 0.95507 1.22367 1.00310 0.99175 0.97159 1.21247 1.00865 0.92196 1.00248 1.21002 0.98980 1.00107 0.90299 1.20566 1.05881 0.92099 0.89369 1.98358 1.92612 1.62409 1.50819 1.20733 0.98740 0.91534 0.99312 1.20169 1.04411 0.89197 0.92093 1.98384 1.84173 1.25045 1.94068 0.91653 0.92865 0.91709 0.95542 0.94991 0.92603 0.83721 0.84466 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.72 37.16 0.32 -1.85 16 2 C -0.07 -1.32 1.98 -26.73 -0.05 -1.37 16 3 H 0.09 1.60 6.80 -51.92 -0.35 1.25 16 4 C 0.00 0.09 3.51 -27.89 -0.10 -0.01 16 5 C -0.52 -14.10 9.09 -34.44 -0.31 -14.41 16 6 H 0.08 2.37 7.84 -52.48 -0.41 1.96 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 9 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 S -0.03 -0.50 19.51 -107.50 -2.10 -2.60 16 14 C -0.07 -1.16 5.99 -39.03 -0.23 -1.40 16 15 C -0.12 -1.63 8.07 -39.37 -0.32 -1.95 16 16 C -0.08 -0.98 9.82 -39.57 -0.39 -1.36 16 17 C -0.05 -0.57 6.32 -39.47 -0.25 -0.82 16 18 Cl -0.07 -0.73 28.95 -51.86 -1.50 -2.24 16 19 C -0.08 -1.02 9.60 -39.54 -0.38 -1.40 16 20 C -0.02 -0.35 6.34 -39.30 -0.25 -0.59 16 21 Cl -0.05 -0.66 27.83 -51.86 -1.44 -2.11 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.68 6.20 -51.93 -0.32 0.36 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.60 7.20 -51.93 -0.37 0.22 16 26 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.15 1.86 5.00 -52.49 -0.26 1.60 16 29 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -28.74 294.71 -9.53 -38.27 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -2.97 Total: -2.56 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -2.06 Total: -23.23 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -2.10 Total: -2.60 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -2.94 Total: -4.34 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.74 -9.53 -38.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882686.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.976 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds