Wall clock time and date at job start Tue Mar 31 2020 06:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46857 * 2 1 4 4 C 1.53003 * 109.46759 * 240.00536 * 2 1 3 5 5 C 1.50693 * 109.47149 * 174.99655 * 4 2 1 6 6 H 1.08008 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00532 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00564 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99479 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46834 * 90.00077 * 9 7 5 11 11 H 1.48504 * 109.47203 * 209.99898 * 9 7 5 12 12 H 1.48499 * 109.47520 * 330.00342 * 9 7 5 13 13 S 1.81391 * 109.47331 * 120.00611 * 2 1 3 14 14 C 1.76198 * 102.99890 * 289.20050 * 13 2 1 15 15 C 1.38931 * 120.07127 * 354.27902 * 14 13 2 16 16 C 1.38103 * 119.94465 * 179.72453 * 15 14 13 17 17 C 1.38402 * 120.08788 * 359.97438 * 16 15 14 18 18 Cl 1.73599 * 119.93074 * 179.97438 * 17 16 15 19 19 C 1.38388 * 120.14258 * 0.02955 * 17 16 15 20 20 C 1.38195 * 120.04891 * 359.94851 * 19 17 16 21 21 Cl 1.73607 * 120.03850 * 180.02562 * 20 19 17 22 22 H 1.08996 * 109.46900 * 174.44811 * 1 2 3 23 23 H 1.08998 * 109.46792 * 294.44303 * 1 2 3 24 24 H 1.08995 * 109.47323 * 54.44334 * 1 2 3 25 25 H 1.09002 * 109.47330 * 295.00082 * 4 2 1 26 26 H 1.09004 * 109.47369 * 54.99933 * 4 2 1 27 27 H 0.96996 * 119.99948 * 180.02562 * 8 7 5 28 28 H 1.07997 * 120.02733 * 359.75578 * 15 14 13 29 29 H 1.07997 * 119.95565 * 180.02562 * 16 15 14 30 30 H 1.07994 * 119.97465 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5418 -0.6148 -1.3130 6 1 4.0790 -0.0861 -0.5394 7 6 4.2304 -1.1933 -2.3580 8 7 5.5411 -1.1009 -2.4133 9 14 3.3014 -2.1096 -3.6949 10 1 2.9397 -1.1652 -4.7824 11 1 4.1603 -3.1900 -4.2429 12 1 2.0659 -2.7018 -3.1223 13 16 2.1348 -0.8552 1.4809 14 6 1.7346 0.2678 2.7783 15 6 1.2111 1.5194 2.4789 16 6 0.8931 2.3954 3.4981 17 6 1.0946 2.0279 4.8171 18 17 0.6939 3.1325 6.0950 19 6 1.6158 0.7821 5.1195 20 6 1.9357 -0.0992 4.1042 21 17 2.5890 -1.6622 4.4839 22 1 -0.3633 -1.0228 -0.0994 23 1 -0.3633 0.4252 0.9356 24 1 -0.3634 0.5976 -0.8360 25 1 1.7516 -1.7714 -1.2058 26 1 1.6053 -0.2616 -2.1371 27 1 6.0253 -1.5076 -3.1488 28 1 1.0526 1.8069 1.4500 29 1 0.4858 3.3682 3.2655 30 1 1.7724 0.4982 6.1496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882686.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:18 Heat of formation + Delta-G solvation = -17.432545 kcal Electronic energy + Delta-G solvation = -15871.009431 eV Core-core repulsion = 13036.053352 eV Total energy + Delta-G solvation = -2834.956079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30893 -37.74926 -37.31591 -36.52302 -34.23233 -32.18222 -31.72289 -29.81480 -24.97482 -24.17416 -24.08055 -22.10393 -19.02974 -18.90102 -17.79561 -17.02257 -16.55637 -16.37087 -15.70326 -15.24983 -15.08898 -14.77052 -14.22118 -13.99383 -13.76314 -13.51071 -13.37288 -13.06316 -12.79087 -12.65690 -12.26705 -12.19603 -11.97792 -11.94010 -11.76683 -11.60869 -11.41902 -10.83230 -10.67556 -10.51518 -10.00800 -8.36471 -8.22721 -6.28231 -0.18571 -0.00502 0.51001 0.81157 1.26980 1.36431 1.39712 1.49262 1.63410 2.29549 2.37503 3.11057 3.57811 3.91898 3.95670 4.08488 4.11484 4.15550 4.44437 4.59191 4.68768 4.86177 4.90480 4.95474 5.01119 5.07098 5.21344 5.34124 5.42346 5.61919 6.29163 6.79157 7.34627 8.91659 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.004313 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.712947 B = 6489.987973 C = 6977.928445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 H 0.087 0.913 4 C 0.005 3.995 5 C -0.521 4.521 6 H 0.041 0.959 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.941 3.059 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.246 1.246 13 S -0.097 6.097 14 C -0.084 4.084 15 C -0.122 4.122 16 C -0.076 4.076 17 C -0.043 4.043 18 Cl -0.051 7.051 19 C -0.081 4.081 20 C -0.034 4.034 21 Cl -0.054 7.054 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.152 0.848 29 H 0.167 0.833 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 6.241 14.015 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.190 4.190 3 H 0.105 0.895 4 C -0.033 4.033 5 C -0.559 4.559 6 H 0.059 0.941 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.765 3.235 10 H -0.188 1.188 11 H -0.216 1.216 12 H -0.170 1.170 13 S 0.152 5.848 14 C -0.199 4.199 15 C -0.147 4.147 16 C -0.096 4.096 17 C -0.074 4.074 18 Cl -0.022 7.022 19 C -0.101 4.101 20 C -0.068 4.068 21 Cl -0.025 7.025 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.103 0.897 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.219 4.976 13.950 19.852 hybrid contribution -0.026 0.578 -0.624 0.851 sum -13.245 5.554 13.325 19.592 Atomic orbital electron populations 1.22149 0.91083 1.03593 1.03318 1.23502 0.99338 1.01645 0.94482 0.89474 1.19415 0.94814 0.96178 0.92932 1.21377 0.91737 1.34342 1.08455 0.94082 1.25907 0.95455 0.96933 1.00600 1.70065 1.08571 1.46981 1.33428 0.85797 0.79433 0.78825 0.79469 1.18802 1.21614 1.16953 1.86423 1.74296 1.26120 0.97919 1.22194 1.02275 0.99357 0.96122 1.21393 1.00453 0.91608 1.01205 1.21297 0.97831 1.00789 0.89683 1.20723 1.04488 0.92040 0.90113 1.98375 1.92326 1.61561 1.49913 1.20943 0.98074 0.91386 0.99731 1.20335 1.04836 0.89397 0.92269 1.98379 1.84360 1.25700 1.94024 0.91648 0.91186 0.89720 0.95809 0.93529 0.92695 0.83094 0.81538 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.72 71.98 0.63 -3.10 16 2 C -0.06 -2.16 1.98 30.60 0.06 -2.10 16 3 H 0.09 3.06 6.80 -2.39 -0.02 3.04 16 4 C 0.01 0.22 3.51 29.85 0.10 0.33 16 5 C -0.52 -28.69 9.09 25.60 0.23 -28.45 16 6 H 0.04 2.53 7.84 -2.91 -0.02 2.50 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 9 Si 0.94 42.94 27.47 68.60 1.88 44.83 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 13 S -0.10 -3.63 19.51 -56.49 -1.10 -4.74 16 14 C -0.08 -2.58 5.99 22.63 0.14 -2.45 16 15 C -0.12 -3.07 8.07 22.40 0.18 -2.89 16 16 C -0.08 -1.54 9.82 22.28 0.22 -1.32 16 17 C -0.04 -0.89 6.32 22.34 0.14 -0.75 16 18 Cl -0.05 -0.89 28.95 -2.72 -0.08 -0.97 16 19 C -0.08 -1.84 9.60 22.30 0.21 -1.62 16 20 C -0.03 -0.96 6.34 22.45 0.14 -0.82 16 21 Cl -0.05 -1.56 27.83 -2.72 -0.08 -1.64 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 1.60 6.20 -2.39 -0.01 1.58 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 26 H 0.05 1.90 7.57 -2.39 -0.02 1.88 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.15 3.57 5.00 -2.91 -0.01 3.56 16 29 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -63.92 294.71 4.55 -59.37 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.10 Total: 4.17 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 2.52 Total: -42.26 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.30 Total: -58.76 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.10 Total: -4.74 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.15 Total: -2.61 kcal Total: -63.92 4.55 -59.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882686.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.939 kcal (2) G-P(sol) polarization free energy of solvation -63.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds