Wall clock time and date at job start Tue Mar 31 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47152 * 2 1 4 4 C 1.53010 * 109.46988 * 119.99357 * 2 1 3 5 5 C 1.50699 * 109.46994 * 185.00168 * 4 2 1 6 6 H 1.08004 * 119.99921 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99855 * 179.72695 * 5 4 2 8 8 N 1.31512 * 119.99658 * 0.27661 * 7 5 4 9 9 Si 1.86794 * 119.99767 * 180.27245 * 7 5 4 10 10 H 1.48502 * 109.47274 * 90.00145 * 9 7 5 11 11 H 1.48501 * 109.47246 * 209.99901 * 9 7 5 12 12 H 1.48497 * 109.47492 * 329.99906 * 9 7 5 13 13 S 1.81394 * 109.47482 * 239.99514 * 2 1 3 14 14 C 1.76199 * 102.99783 * 71.19480 * 13 2 1 15 15 C 1.38931 * 120.07204 * 5.61035 * 14 13 2 16 16 C 1.38099 * 119.94435 * 180.02562 * 15 14 13 17 17 C 1.38400 * 120.09030 * 359.97256 * 16 15 14 18 18 Cl 1.73599 * 119.92927 * 180.02562 * 17 16 15 19 19 C 1.38386 * 120.14049 * 0.02562 * 17 16 15 20 20 C 1.38193 * 120.05062 * 359.72259 * 19 17 16 21 21 Cl 1.73607 * 120.04287 * 180.27247 * 20 19 17 22 22 H 1.08998 * 109.46759 * 304.17099 * 1 2 3 23 23 H 1.08998 * 109.46874 * 64.17100 * 1 2 3 24 24 H 1.08997 * 109.47257 * 184.17364 * 1 2 3 25 25 H 1.08997 * 109.46590 * 65.00323 * 4 2 1 26 26 H 1.08999 * 109.47134 * 305.00313 * 4 2 1 27 27 H 0.96998 * 119.99273 * 180.02562 * 8 7 5 28 28 H 1.08003 * 120.02465 * 0.02562 * 15 14 13 29 29 H 1.08004 * 119.95555 * 179.97438 * 16 15 14 30 30 H 1.08001 * 119.97442 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3129 6 1 4.0790 -0.0861 0.5393 7 6 4.2299 -1.1880 2.3613 8 7 3.5758 -1.8323 3.3030 9 14 6.0909 -1.0496 2.4440 10 1 6.4632 0.1760 3.1953 11 1 6.6457 -2.2413 3.1348 12 1 6.6433 -0.9735 1.0677 13 16 2.1348 -0.8552 -1.4810 14 6 1.7451 0.2731 -2.7770 15 6 1.2256 1.5261 -2.4765 16 6 0.9206 2.4081 -3.4944 17 6 1.1324 2.0458 -4.8132 18 17 0.7482 3.1581 -6.0895 19 6 1.6498 0.7986 -5.1167 20 6 1.9619 -0.0866 -4.1025 21 17 2.6175 -1.6484 -4.4831 22 1 -0.3633 0.5772 0.8503 23 1 -0.3633 0.4477 -0.9250 24 1 -0.3633 -1.0249 0.0748 25 1 1.7516 -1.7714 1.2058 26 1 1.6053 -0.2616 2.1371 27 1 4.0599 -2.2352 4.0407 28 1 1.0604 1.8100 -1.4476 29 1 0.5164 3.3820 -3.2610 30 1 1.8143 0.5188 -6.1468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:21 Heat of formation + Delta-G solvation = -7.902928 kcal Electronic energy + Delta-G solvation = -15853.723433 eV Core-core repulsion = 13019.180589 eV Total energy + Delta-G solvation = -2834.542844 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.25775 -36.74457 -36.26882 -34.79436 -32.30771 -30.98937 -30.66072 -27.57561 -23.44995 -23.08311 -23.00591 -20.63281 -17.90201 -16.58159 -16.43880 -15.89283 -15.14024 -14.77598 -14.45786 -14.09136 -14.01194 -12.96612 -12.88586 -12.51565 -12.34866 -12.07832 -11.89113 -11.68058 -11.26290 -11.10409 -11.02116 -10.93265 -10.87149 -10.57097 -10.48522 -9.63911 -9.52113 -9.35149 -9.20317 -8.96004 -8.44473 -6.98181 -6.09500 -4.11831 0.88408 1.02595 1.81566 1.84661 2.37443 2.98628 3.29041 3.33944 3.36012 3.40981 4.40692 4.60137 4.84648 5.12967 5.21655 5.28333 5.46190 5.54532 5.58914 5.72475 5.81663 5.96680 6.02873 6.17613 6.41638 6.45947 6.54883 7.39895 7.47041 7.87072 8.22245 8.92524 9.53013 11.01618 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.004370 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.532996 B = 6405.848043 C = 6745.358270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.084 0.916 4 C 0.040 3.960 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 S -0.035 6.035 14 C -0.074 4.074 15 C -0.120 4.120 16 C -0.083 4.083 17 C -0.049 4.049 18 Cl -0.071 7.071 19 C -0.083 4.083 20 C -0.025 4.025 21 Cl -0.047 7.047 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.262 0.738 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 6.730 -15.235 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 H 0.103 0.897 4 C 0.002 3.998 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 S 0.217 5.783 14 C -0.190 4.190 15 C -0.146 4.146 16 C -0.104 4.104 17 C -0.080 4.080 18 Cl -0.043 7.043 19 C -0.104 4.104 20 C -0.060 4.060 21 Cl -0.018 7.018 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.163 0.837 29 H 0.155 0.845 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.083 5.385 -15.083 17.132 hybrid contribution 0.483 1.300 0.049 1.388 sum -5.600 6.685 -15.034 17.380 Atomic orbital electron populations 1.22176 0.94478 1.02946 1.01231 1.23901 0.97012 1.02572 0.97214 0.89743 1.19030 0.96625 0.95639 0.88493 1.21215 0.91379 1.35173 1.08278 0.91898 1.24968 0.98542 0.95016 0.95527 1.69947 1.35751 1.35708 1.11899 0.86590 0.85563 0.77564 0.78404 1.20653 1.21179 1.19561 1.86332 1.72224 1.23794 0.95959 1.22407 1.00179 0.99188 0.97216 1.21264 1.00898 0.92126 1.00274 1.21006 0.98959 1.00133 0.90314 1.20560 1.06069 0.91986 0.89377 1.98357 1.93013 1.61920 1.50968 1.20727 0.98829 0.91509 0.99289 1.20172 1.04509 0.89151 0.92133 1.98381 1.84085 1.25255 1.94053 0.91731 0.93264 0.91641 0.95399 0.94420 0.92844 0.83677 0.84494 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.74 37.16 0.32 -1.97 16 2 C -0.08 -1.47 1.98 -26.73 -0.05 -1.52 16 3 H 0.08 1.54 6.78 -51.92 -0.35 1.18 16 4 C 0.04 0.96 4.45 -27.88 -0.12 0.84 16 5 C -0.52 -13.90 8.53 -34.44 -0.29 -14.19 16 6 H 0.06 1.66 7.60 -52.48 -0.40 1.26 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 S -0.03 -0.65 19.51 -107.50 -2.10 -2.75 16 14 C -0.07 -1.17 6.01 -39.03 -0.23 -1.40 16 15 C -0.12 -1.65 8.09 -39.38 -0.32 -1.97 16 16 C -0.08 -0.98 9.82 -39.57 -0.39 -1.37 16 17 C -0.05 -0.58 6.32 -39.47 -0.25 -0.83 16 18 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 19 C -0.08 -1.03 9.60 -39.54 -0.38 -1.41 16 20 C -0.02 -0.36 6.34 -39.30 -0.25 -0.61 16 21 Cl -0.05 -0.68 27.83 -51.86 -1.44 -2.12 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.67 6.23 -51.93 -0.32 0.34 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.15 1.91 4.98 -52.48 -0.26 1.65 16 29 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -27.87 298.35 -9.90 -37.77 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -3.01 Total: -3.46 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.06 Total: -22.84 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.74 Total: -25.11 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.10 Total: -2.75 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -2.94 Total: -4.36 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.87 -9.90 -37.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.870 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds