Wall clock time and date at job start Tue Mar 31 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47152 * 2 1 4 4 C 1.53010 * 109.46988 * 119.99357 * 2 1 3 5 5 C 1.50699 * 109.46994 * 185.00168 * 4 2 1 6 6 H 1.08004 * 119.99921 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99855 * 179.72695 * 5 4 2 8 8 N 1.31512 * 119.99658 * 0.27661 * 7 5 4 9 9 Si 1.86794 * 119.99767 * 180.27245 * 7 5 4 10 10 H 1.48502 * 109.47274 * 90.00145 * 9 7 5 11 11 H 1.48501 * 109.47246 * 209.99901 * 9 7 5 12 12 H 1.48497 * 109.47492 * 329.99906 * 9 7 5 13 13 S 1.81394 * 109.47482 * 239.99514 * 2 1 3 14 14 C 1.76199 * 102.99783 * 71.19480 * 13 2 1 15 15 C 1.38931 * 120.07204 * 5.61035 * 14 13 2 16 16 C 1.38099 * 119.94435 * 180.02562 * 15 14 13 17 17 C 1.38400 * 120.09030 * 359.97256 * 16 15 14 18 18 Cl 1.73599 * 119.92927 * 180.02562 * 17 16 15 19 19 C 1.38386 * 120.14049 * 0.02562 * 17 16 15 20 20 C 1.38193 * 120.05062 * 359.72259 * 19 17 16 21 21 Cl 1.73607 * 120.04287 * 180.27247 * 20 19 17 22 22 H 1.08998 * 109.46759 * 304.17099 * 1 2 3 23 23 H 1.08998 * 109.46874 * 64.17100 * 1 2 3 24 24 H 1.08997 * 109.47257 * 184.17364 * 1 2 3 25 25 H 1.08997 * 109.46590 * 65.00323 * 4 2 1 26 26 H 1.08999 * 109.47134 * 305.00313 * 4 2 1 27 27 H 0.96998 * 119.99273 * 180.02562 * 8 7 5 28 28 H 1.08003 * 120.02465 * 0.02562 * 15 14 13 29 29 H 1.08004 * 119.95555 * 179.97438 * 16 15 14 30 30 H 1.08001 * 119.97442 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3129 6 1 4.0790 -0.0861 0.5393 7 6 4.2299 -1.1880 2.3613 8 7 3.5758 -1.8323 3.3030 9 14 6.0909 -1.0496 2.4440 10 1 6.4632 0.1760 3.1953 11 1 6.6457 -2.2413 3.1348 12 1 6.6433 -0.9735 1.0677 13 16 2.1348 -0.8552 -1.4810 14 6 1.7451 0.2731 -2.7770 15 6 1.2256 1.5261 -2.4765 16 6 0.9206 2.4081 -3.4944 17 6 1.1324 2.0458 -4.8132 18 17 0.7482 3.1581 -6.0895 19 6 1.6498 0.7986 -5.1167 20 6 1.9619 -0.0866 -4.1025 21 17 2.6175 -1.6484 -4.4831 22 1 -0.3633 0.5772 0.8503 23 1 -0.3633 0.4477 -0.9250 24 1 -0.3633 -1.0249 0.0748 25 1 1.7516 -1.7714 1.2058 26 1 1.6053 -0.2616 2.1371 27 1 4.0599 -2.2352 4.0407 28 1 1.0604 1.8100 -1.4476 29 1 0.5164 3.3820 -3.2610 30 1 1.8143 0.5188 -6.1468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:20 Heat of formation + Delta-G solvation = -20.340525 kcal Electronic energy + Delta-G solvation = -15854.262768 eV Core-core repulsion = 13019.180589 eV Total energy + Delta-G solvation = -2835.082178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29991 -37.74078 -37.30483 -36.48574 -34.17332 -32.11453 -31.70973 -29.35696 -25.26747 -24.19596 -24.07101 -22.18236 -19.02897 -18.49327 -17.77197 -16.99969 -16.58579 -16.41550 -15.71215 -15.22036 -15.11213 -14.60878 -14.23575 -13.84687 -13.56345 -13.40032 -13.30288 -13.03965 -12.75197 -12.62936 -12.41591 -12.27299 -12.17406 -11.96912 -11.91311 -11.48344 -11.24163 -10.81157 -10.52013 -10.50071 -9.99907 -8.34556 -8.19836 -6.27546 -0.17599 0.00439 0.52791 0.81954 1.28114 1.39838 1.41663 1.52260 1.65515 2.30469 2.41698 3.15976 3.58835 3.92897 4.02107 4.10246 4.15256 4.16674 4.47558 4.59948 4.69511 4.86421 4.95675 4.96877 5.03016 5.20331 5.39293 5.42518 5.50769 5.77916 6.18250 6.84665 7.40538 8.91770 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.004370 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.532996 B = 6405.848043 C = 6745.358270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 H 0.090 0.910 4 C 0.046 3.954 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.268 1.268 13 S -0.093 6.093 14 C -0.085 4.085 15 C -0.122 4.122 16 C -0.076 4.076 17 C -0.043 4.043 18 Cl -0.051 7.051 19 C -0.080 4.080 20 C -0.033 4.033 21 Cl -0.053 7.053 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.057 0.943 25 H -0.001 1.001 26 H 0.020 0.980 27 H 0.263 0.737 28 H 0.150 0.850 29 H 0.166 0.834 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 8.728 -17.049 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.193 4.193 3 H 0.108 0.892 4 C 0.008 3.992 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.192 1.192 13 S 0.157 5.843 14 C -0.200 4.200 15 C -0.146 4.146 16 C -0.096 4.096 17 C -0.073 4.073 18 Cl -0.022 7.022 19 C -0.101 4.101 20 C -0.067 4.067 21 Cl -0.024 7.024 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.325 7.413 -16.928 19.532 hybrid contribution 0.494 0.780 0.442 1.024 sum -5.831 8.193 -16.485 19.311 Atomic orbital electron populations 1.22103 0.91888 1.03001 1.02938 1.23614 0.99020 1.01673 0.94944 0.89203 1.18817 0.95405 0.94411 0.90581 1.21565 0.92946 1.34312 1.07804 0.91977 1.25780 1.02922 0.94948 0.95412 1.70062 1.37400 1.37000 1.12652 0.85629 0.80423 0.77746 0.78449 1.19656 1.21037 1.19198 1.86378 1.74264 1.25944 0.97741 1.22217 1.02314 0.99288 0.96171 1.21387 1.00521 0.91580 1.01158 1.21290 0.97798 1.00807 0.89708 1.20719 1.04574 0.91954 0.90096 1.98376 1.92730 1.61065 1.50047 1.20940 0.98107 0.91313 0.99734 1.20323 1.04823 0.89377 0.92217 1.98379 1.84233 1.25819 1.93993 0.90515 0.90964 0.92401 0.98257 0.96215 0.92842 0.83220 0.81607 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.74 71.98 0.63 -3.58 16 2 C -0.06 -2.40 1.98 30.60 0.06 -2.34 16 3 H 0.09 3.22 6.78 -2.39 -0.02 3.21 16 4 C 0.05 2.26 4.45 29.85 0.13 2.40 16 5 C -0.53 -28.64 8.53 25.60 0.22 -28.42 16 6 H 0.06 3.31 7.60 -2.91 -0.02 3.29 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 9 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 S -0.09 -3.48 19.51 -56.49 -1.10 -4.58 16 14 C -0.08 -2.56 6.01 22.63 0.14 -2.42 16 15 C -0.12 -3.05 8.09 22.40 0.18 -2.86 16 16 C -0.08 -1.52 9.82 22.28 0.22 -1.30 16 17 C -0.04 -0.87 6.32 22.34 0.14 -0.73 16 18 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.96 16 19 C -0.08 -1.78 9.60 22.29 0.21 -1.56 16 20 C -0.03 -0.91 6.34 22.45 0.14 -0.77 16 21 Cl -0.05 -1.51 27.83 -2.72 -0.08 -1.58 16 22 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.07 1.82 6.23 -2.39 -0.01 1.81 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.15 3.58 4.98 -2.91 -0.01 3.57 16 29 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -60.51 298.35 4.75 -55.76 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.16 Total: 0.87 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 2.54 Total: -40.71 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.80 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.10 Total: -4.58 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.15 Total: -2.54 kcal Total: -60.51 4.75 -55.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.416 kcal (2) G-P(sol) polarization free energy of solvation -60.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds