Wall clock time and date at job start Tue Mar 31 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47400 * 2 1 4 4 C 1.52995 * 109.47243 * 239.99016 * 2 1 3 5 5 C 1.50699 * 109.46903 * 175.00132 * 4 2 1 6 6 H 1.07995 * 120.00593 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00073 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99824 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47315 * 60.00136 * 9 7 5 11 11 H 1.48506 * 109.46889 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46995 * 299.99597 * 9 7 5 13 13 S 1.81404 * 109.46820 * 119.99637 * 2 1 3 14 14 C 1.76202 * 102.99875 * 290.08870 * 13 2 1 15 15 C 1.38981 * 120.06312 * 173.78343 * 14 13 2 16 16 C 1.38080 * 119.96092 * 179.97438 * 15 14 13 17 17 C 1.38394 * 120.07711 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 119.93493 * 179.97438 * 17 16 15 19 19 C 1.38488 * 120.12467 * 0.02562 * 17 16 15 20 20 Cl 1.73600 * 119.98243 * 180.02562 * 19 17 16 21 21 C 1.38225 * 120.03950 * 0.26870 * 19 17 16 22 22 H 1.09008 * 109.46729 * 54.62623 * 1 2 3 23 23 H 1.09002 * 109.47587 * 174.62037 * 1 2 3 24 24 H 1.08997 * 109.47789 * 294.62766 * 1 2 3 25 25 H 1.08995 * 109.47776 * 295.00272 * 4 2 1 26 26 H 1.09003 * 109.47189 * 55.00509 * 4 2 1 27 27 H 0.96998 * 120.00328 * 179.97438 * 8 7 5 28 28 H 1.08002 * 120.02226 * 0.02562 * 15 14 13 29 29 H 1.07993 * 119.96222 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.03730 * 179.70292 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3125 6 1 4.0790 -0.0863 -0.5391 7 6 4.2304 -1.1930 -2.3580 8 7 3.5765 -1.8374 -3.2996 9 14 6.0922 -1.0618 -2.4362 10 1 6.6839 -1.6886 -1.2270 11 1 6.5872 -1.7619 -3.6487 12 1 6.4855 0.3690 -2.4949 13 16 2.1346 -0.8551 1.4812 14 6 1.7107 0.2563 2.7812 15 6 1.9033 -0.1163 4.1062 16 6 1.5708 0.7565 5.1232 17 6 1.0456 2.0017 4.8247 18 17 0.6283 3.0958 6.1063 19 6 0.8513 2.3760 3.5056 20 17 0.1928 3.9390 3.1353 21 6 1.1767 1.5038 2.4838 22 1 -0.3633 0.5950 -0.8380 23 1 -0.3634 -1.0231 -0.0963 24 1 -0.3634 0.4282 0.9341 25 1 1.7517 -1.7717 -1.2054 26 1 1.6055 -0.2620 -2.1369 27 1 4.0608 -2.2437 -4.0353 28 1 2.3135 -1.0875 4.3403 29 1 1.7209 0.4672 6.1528 30 1 1.0206 1.7939 1.4552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695888484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:23 Heat of formation + Delta-G solvation = -8.112721 kcal Electronic energy + Delta-G solvation = -15818.267100 eV Core-core repulsion = 12983.715159 eV Total energy + Delta-G solvation = -2834.551941 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28387 -36.58238 -36.54781 -34.84278 -32.33772 -30.97797 -30.65968 -27.58470 -23.45559 -23.10196 -23.03939 -20.63347 -17.94453 -16.55650 -16.44349 -15.89696 -15.20984 -14.83585 -14.48126 -14.18620 -14.02077 -12.99869 -12.85433 -12.50839 -12.04977 -11.96956 -11.87088 -11.74228 -11.68409 -11.23742 -10.98896 -10.94104 -10.89543 -10.62148 -10.47037 -9.65062 -9.56192 -9.38874 -9.23547 -8.97149 -8.45684 -7.01893 -6.10646 -4.13357 0.85255 1.02172 1.77521 1.85251 2.20575 2.95833 3.30098 3.33544 3.34320 3.37587 4.39233 4.54362 4.98186 5.10633 5.19409 5.26936 5.45681 5.53175 5.58152 5.71583 5.80924 5.93814 6.10688 6.18563 6.41897 6.44681 6.53501 7.38887 7.45100 7.85541 8.20684 8.90792 9.51476 11.00390 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.004019 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.591393 B = 6965.090675 C = 7154.207829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.085 0.915 4 C 0.040 3.960 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.276 1.276 13 S -0.057 6.057 14 C -0.067 4.067 15 C -0.097 4.097 16 C -0.079 4.079 17 C -0.055 4.055 18 Cl -0.062 7.062 19 C -0.006 4.006 20 Cl -0.055 7.055 21 C -0.124 4.124 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.263 0.737 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 6.569 15.414 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.199 4.199 3 H 0.103 0.897 4 C 0.002 3.998 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 S 0.194 5.806 14 C -0.181 4.181 15 C -0.122 4.122 16 C -0.100 4.100 17 C -0.086 4.086 18 Cl -0.033 7.033 19 C -0.036 4.036 20 Cl -0.026 7.026 21 C -0.150 4.150 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.294 5.533 15.193 17.351 hybrid contribution 0.346 1.554 -0.140 1.598 sum -5.947 7.087 15.053 17.669 Atomic orbital electron populations 1.22196 0.94438 1.02988 1.01350 1.23838 0.96962 1.02410 0.96683 0.89727 1.19038 0.96629 0.95626 0.88534 1.21177 0.91351 1.35180 1.08497 0.91935 1.24971 0.98564 0.95006 0.95488 1.69933 1.35851 1.35517 1.11990 0.86637 0.85497 0.78343 0.77510 1.19992 1.21283 1.20170 1.86078 1.72048 1.25960 0.96548 1.22427 0.99021 0.97491 0.99181 1.20834 1.01082 1.00286 0.90046 1.20899 0.97746 0.91068 1.00301 1.20604 1.06900 0.93565 0.87558 1.98361 1.92136 1.63183 1.49625 1.20635 1.01785 0.88663 0.92477 1.98378 1.84051 1.25456 1.94748 1.21214 1.01750 0.92637 0.99368 0.91642 0.91575 0.93225 0.95363 0.94354 0.92760 0.84098 0.84030 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.71 37.16 0.32 -2.03 16 2 C -0.07 -1.32 1.98 -26.73 -0.05 -1.37 16 3 H 0.08 1.58 6.85 -51.93 -0.36 1.22 16 4 C 0.04 0.95 4.45 -27.89 -0.12 0.83 16 5 C -0.52 -13.86 8.53 -34.44 -0.29 -14.15 16 6 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 S -0.06 -1.02 20.61 -107.50 -2.22 -3.24 16 14 C -0.07 -1.00 5.98 -39.05 -0.23 -1.23 16 15 C -0.10 -1.23 9.79 -39.36 -0.39 -1.62 16 16 C -0.08 -0.90 9.82 -39.58 -0.39 -1.29 16 17 C -0.05 -0.69 6.32 -39.43 -0.25 -0.94 16 18 Cl -0.06 -0.70 27.95 -51.86 -1.45 -2.15 16 19 C -0.01 -0.08 6.32 -39.49 -0.25 -0.33 16 20 Cl -0.06 -0.70 27.95 -51.86 -1.45 -2.15 16 21 C -0.12 -1.80 7.81 -39.33 -0.31 -2.11 16 22 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.70 6.09 -51.93 -0.32 0.38 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.15 2.15 4.98 -52.49 -0.26 1.89 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -27.54 298.34 -9.97 -37.51 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -3.00 Total: -2.92 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.06 Total: -22.66 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.74 Total: -24.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.22 Total: -3.24 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -2.90 Total: -4.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.54 -9.97 -37.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695888484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.397 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds