Wall clock time and date at job start Tue Mar 31 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47400 * 2 1 4 4 C 1.52995 * 109.47243 * 239.99016 * 2 1 3 5 5 C 1.50699 * 109.46903 * 175.00132 * 4 2 1 6 6 H 1.07995 * 120.00593 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00073 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99824 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47315 * 60.00136 * 9 7 5 11 11 H 1.48506 * 109.46889 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46995 * 299.99597 * 9 7 5 13 13 S 1.81404 * 109.46820 * 119.99637 * 2 1 3 14 14 C 1.76202 * 102.99875 * 290.08870 * 13 2 1 15 15 C 1.38981 * 120.06312 * 173.78343 * 14 13 2 16 16 C 1.38080 * 119.96092 * 179.97438 * 15 14 13 17 17 C 1.38394 * 120.07711 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 119.93493 * 179.97438 * 17 16 15 19 19 C 1.38488 * 120.12467 * 0.02562 * 17 16 15 20 20 Cl 1.73600 * 119.98243 * 180.02562 * 19 17 16 21 21 C 1.38225 * 120.03950 * 0.26870 * 19 17 16 22 22 H 1.09008 * 109.46729 * 54.62623 * 1 2 3 23 23 H 1.09002 * 109.47587 * 174.62037 * 1 2 3 24 24 H 1.08997 * 109.47789 * 294.62766 * 1 2 3 25 25 H 1.08995 * 109.47776 * 295.00272 * 4 2 1 26 26 H 1.09003 * 109.47189 * 55.00509 * 4 2 1 27 27 H 0.96998 * 120.00328 * 179.97438 * 8 7 5 28 28 H 1.08002 * 120.02226 * 0.02562 * 15 14 13 29 29 H 1.07993 * 119.96222 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.03730 * 179.70292 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3125 6 1 4.0790 -0.0863 -0.5391 7 6 4.2304 -1.1930 -2.3580 8 7 3.5765 -1.8374 -3.2996 9 14 6.0922 -1.0618 -2.4362 10 1 6.6839 -1.6886 -1.2270 11 1 6.5872 -1.7619 -3.6487 12 1 6.4855 0.3690 -2.4949 13 16 2.1346 -0.8551 1.4812 14 6 1.7107 0.2563 2.7812 15 6 1.9033 -0.1163 4.1062 16 6 1.5708 0.7565 5.1232 17 6 1.0456 2.0017 4.8247 18 17 0.6283 3.0958 6.1063 19 6 0.8513 2.3760 3.5056 20 17 0.1928 3.9390 3.1353 21 6 1.1767 1.5038 2.4838 22 1 -0.3633 0.5950 -0.8380 23 1 -0.3634 -1.0231 -0.0963 24 1 -0.3634 0.4282 0.9341 25 1 1.7517 -1.7717 -1.2054 26 1 1.6055 -0.2620 -2.1369 27 1 4.0608 -2.2437 -4.0353 28 1 2.3135 -1.0875 4.3403 29 1 1.7209 0.4672 6.1528 30 1 1.0206 1.7939 1.4552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695888484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:23 Heat of formation + Delta-G solvation = -20.134651 kcal Electronic energy + Delta-G solvation = -15818.788410 eV Core-core repulsion = 12983.715159 eV Total energy + Delta-G solvation = -2835.073251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.32010 -37.58230 -37.52552 -36.54716 -34.20127 -32.10725 -31.70484 -29.36920 -25.28273 -24.19490 -24.11011 -22.19287 -19.06156 -18.50160 -17.71494 -16.99853 -16.57614 -16.49006 -15.85050 -15.24678 -15.10895 -14.62868 -14.23535 -13.81913 -13.58684 -13.35490 -13.03659 -12.93325 -12.84820 -12.73154 -12.55938 -12.37933 -12.33169 -11.94060 -11.87317 -11.49469 -11.26620 -10.91784 -10.53138 -10.46349 -10.00288 -8.34857 -8.19797 -6.28174 -0.19848 -0.00188 0.56633 0.77125 1.14666 1.41811 1.43345 1.50926 1.61935 2.30298 2.41897 3.15807 3.55600 3.96519 4.01745 4.06314 4.12335 4.18328 4.45019 4.58006 4.66341 4.83594 4.92501 4.95396 5.08880 5.16653 5.38122 5.43299 5.48885 5.77155 6.17316 6.83742 7.40046 8.91595 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.004019 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.591393 B = 6965.090675 C = 7154.207829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 H 0.083 0.917 4 C 0.046 3.954 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.269 1.269 13 S -0.096 6.096 14 C -0.075 4.075 15 C -0.091 4.091 16 C -0.068 4.068 17 C -0.054 4.054 18 Cl -0.048 7.048 19 C -0.016 4.016 20 Cl -0.051 7.051 21 C -0.130 4.130 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.003 0.997 26 H 0.017 0.983 27 H 0.263 0.737 28 H 0.159 0.841 29 H 0.176 0.824 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 7.398 17.730 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.189 4.189 3 H 0.101 0.899 4 C 0.008 3.992 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.194 1.194 13 S 0.153 5.847 14 C -0.189 4.189 15 C -0.116 4.116 16 C -0.089 4.089 17 C -0.085 4.085 18 Cl -0.019 7.019 19 C -0.046 4.046 20 Cl -0.021 7.021 21 C -0.155 4.155 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.021 0.979 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.177 0.823 29 H 0.193 0.807 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.037 6.391 17.534 19.615 hybrid contribution 0.205 1.377 -0.707 1.561 sum -5.832 7.768 16.827 19.430 Atomic orbital electron populations 1.22114 0.92085 1.03182 1.02659 1.23536 0.98842 1.01376 0.95172 0.89884 1.18821 0.95488 0.94496 0.90417 1.21533 0.92836 1.34393 1.08143 0.91890 1.25797 1.03057 0.94878 0.95312 1.70054 1.37539 1.36781 1.12726 0.85659 0.80224 0.78603 0.77591 1.19368 1.21017 1.19364 1.86013 1.73723 1.27393 0.97585 1.22247 1.00830 0.97079 0.98793 1.21099 1.00090 1.01241 0.89168 1.21237 0.96069 0.90000 1.01555 1.20829 1.05917 0.94155 0.87568 1.98374 1.91951 1.62810 1.48752 1.20693 1.02205 0.88873 0.92807 1.98380 1.83963 1.25001 1.94802 1.21170 1.02100 0.92806 0.99471 0.90831 0.91850 0.91398 0.97881 0.96482 0.92794 0.82345 0.80656 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.71 71.98 0.63 -3.77 16 2 C -0.06 -2.31 1.98 30.59 0.06 -2.25 16 3 H 0.08 3.14 6.85 -2.39 -0.02 3.12 16 4 C 0.05 2.26 4.45 29.85 0.13 2.39 16 5 C -0.53 -28.62 8.53 25.60 0.22 -28.40 16 6 H 0.06 3.32 7.60 -2.91 -0.02 3.30 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 9 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 S -0.10 -3.41 20.61 -56.49 -1.16 -4.58 16 14 C -0.08 -2.15 5.98 22.61 0.14 -2.01 16 15 C -0.09 -2.07 9.79 22.41 0.22 -1.85 16 16 C -0.07 -1.30 9.82 22.27 0.22 -1.08 16 17 C -0.05 -1.19 6.32 22.37 0.14 -1.05 16 18 Cl -0.05 -0.94 27.95 -2.72 -0.08 -1.02 16 19 C -0.02 -0.41 6.32 22.33 0.14 -0.27 16 20 Cl -0.05 -1.20 27.95 -2.72 -0.08 -1.28 16 21 C -0.13 -3.61 7.81 22.43 0.18 -3.44 16 22 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.07 1.85 6.09 -2.39 -0.01 1.84 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.14 4.02 4.98 -2.91 -0.01 4.00 16 Total: -1.00 -59.31 298.34 4.68 -54.62 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.16 Total: 2.07 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 2.53 Total: -40.84 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.28 Total: -54.51 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.16 Total: -4.58 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.15 Total: -2.30 kcal Total: -59.31 4.68 -54.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695888484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.490 kcal (2) G-P(sol) polarization free energy of solvation -59.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds