Wall clock time and date at job start Tue Mar 31 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46665 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 299.99144 * 3 2 1 6 6 H 1.48493 * 109.47305 * 59.99199 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.33584 * 126.02713 * 90.00072 * 13 12 11 15 15 N 1.31837 * 114.50908 * 179.97438 * 14 13 12 16 16 C 1.29111 * 117.08982 * 359.97438 * 15 14 13 17 17 Br 1.89099 * 124.92231 * 180.02562 * 16 15 14 18 18 S 1.70974 * 110.16020 * 359.74969 * 16 15 14 19 19 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 21 21 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 22 22 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 23 23 H 1.07997 * 122.74482 * 359.95711 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8817 2.3966 1.2123 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.7049 -6.6585 1.0844 15 7 3.5443 -7.6408 0.8229 16 6 3.7708 -7.9054 -0.4203 17 35 4.9299 -9.2629 -1.0445 18 16 2.8648 -6.8558 -1.4207 19 1 -0.4851 0.8400 -0.0004 20 1 2.9191 -3.6476 0.0027 21 1 0.5889 -4.9739 0.8903 22 1 0.5910 -4.9743 -0.8897 23 1 2.4497 -6.3604 2.0906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718865820.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:20 Heat of formation + Delta-G solvation = 5.805558 kcal Electronic energy + Delta-G solvation = -12688.668070 eV Core-core repulsion = 10096.042477 eV Total energy + Delta-G solvation = -2592.625593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80152 -37.39277 -34.02459 -32.51498 -31.98463 -29.98607 -26.91946 -25.54582 -23.69485 -20.10241 -19.77498 -18.44184 -17.30481 -15.62312 -15.40822 -14.97605 -14.33749 -14.06806 -14.02732 -13.56211 -12.72273 -12.21332 -11.92915 -11.34233 -11.26622 -11.15766 -10.95619 -10.83809 -10.55400 -10.26094 -9.84573 -9.48621 -8.97350 -8.92983 -7.72188 -7.70773 -6.26793 -4.72822 0.35781 0.56172 1.39774 1.52294 2.59037 3.09314 3.18001 3.22376 4.05606 4.49052 4.49720 4.78548 4.99784 5.22298 5.68032 5.91286 6.13195 6.15489 7.35545 7.36626 7.76315 7.91017 8.22907 8.94803 9.37516 10.49230 10.67215 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.003462 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.147121 B = 8086.751482 C = 8364.964044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.578 6.578 11 N -0.764 5.764 12 C 0.204 3.796 13 C -0.200 4.200 14 C 0.043 3.957 15 N -0.438 5.438 16 C -0.001 4.001 17 Br 0.044 6.956 18 S 0.211 5.789 19 H 0.269 0.731 20 H 0.383 0.617 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 -16.789 -2.998 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.359 3.641 10 O -0.461 6.461 11 N -0.421 5.421 12 C 0.077 3.923 13 C -0.323 4.323 14 C -0.110 4.110 15 N -0.154 5.154 16 C -0.355 4.355 17 Br 0.125 6.875 18 S 0.462 5.538 19 H 0.080 0.920 20 H 0.214 0.786 21 H 0.096 0.904 22 H 0.085 0.915 23 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.963 -17.425 -3.908 19.981 hybrid contribution 0.555 1.200 1.105 1.723 sum 9.518 -16.226 -2.803 19.019 Atomic orbital electron populations 1.70017 1.07086 1.27360 1.35041 1.25709 0.94639 1.00355 0.92529 0.86296 0.80501 0.81581 0.78295 1.18722 1.20082 1.20086 1.20894 0.93689 0.89099 1.54275 0.91247 1.18285 0.87234 0.82147 0.76416 1.90614 1.13999 1.86504 1.54961 1.46316 1.08744 1.03810 1.83255 1.19295 0.90400 0.80009 1.02631 1.26673 1.06079 1.04705 0.94872 1.21781 0.95573 0.92869 1.00824 1.66241 1.15266 1.16186 1.17720 1.28099 1.07153 1.04941 0.95303 1.96802 1.59989 1.45792 1.84942 1.84194 1.35726 1.24397 1.09530 0.92021 0.78573 0.90428 0.91537 0.79661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.46 11.83 55.55 0.66 -21.80 14 2 C 0.09 2.39 5.50 -17.37 -0.10 2.29 14 3 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 14 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 14 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 14 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 14 7 C -0.54 -14.91 9.54 -35.64 -0.34 -15.25 14 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 14 9 C 0.55 15.20 7.75 -12.99 -0.10 15.10 14 10 O -0.58 -18.07 15.02 5.20 0.08 -17.99 14 11 N -0.76 -16.23 5.54 -62.90 -0.35 -16.58 14 12 C 0.20 3.63 6.20 -5.20 -0.03 3.60 14 13 C -0.20 -2.91 5.96 -35.94 -0.21 -3.13 14 14 C 0.04 0.60 11.25 -19.18 -0.22 0.38 14 15 N -0.44 -6.35 10.55 -14.13 -0.15 -6.50 14 16 C 0.00 -0.01 7.89 51.62 0.41 0.40 14 17 Br 0.04 0.47 34.13 -68.01 -2.32 -1.85 14 18 S 0.21 2.67 23.22 -107.50 -2.50 0.18 14 19 H 0.27 7.12 8.29 -40.82 -0.34 6.78 14 20 H 0.38 7.32 8.44 -40.82 -0.34 6.98 14 21 H 0.08 1.41 8.14 -51.93 -0.42 0.99 14 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 14 23 H 0.19 2.28 8.06 -52.49 -0.42 1.86 14 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -32.40 254.18 -7.52 -39.93 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -1.16 Total: 2.74 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.59 Total: 3.39 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.16 Total: -44.88 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.08 Total: -17.99 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.50 Total: 0.18 kcal Atomic # 35 Polarization: 0.47 SS G_CDS: -2.32 Total: -1.85 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.40 -7.52 -39.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718865820.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.733 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds