Wall clock time and date at job start Tue Mar 31 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46665 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 299.99144 * 3 2 1 6 6 H 1.48493 * 109.47305 * 59.99199 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.33584 * 126.02713 * 90.00072 * 13 12 11 15 15 N 1.31837 * 114.50908 * 179.97438 * 14 13 12 16 16 C 1.29111 * 117.08982 * 359.97438 * 15 14 13 17 17 Br 1.89099 * 124.92231 * 180.02562 * 16 15 14 18 18 S 1.70974 * 110.16020 * 359.74969 * 16 15 14 19 19 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 21 21 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 22 22 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 23 23 H 1.07997 * 122.74482 * 359.95711 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8817 2.3966 1.2123 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.7049 -6.6585 1.0844 15 7 3.5443 -7.6408 0.8229 16 6 3.7708 -7.9054 -0.4203 17 35 4.9299 -9.2629 -1.0445 18 16 2.8648 -6.8558 -1.4207 19 1 -0.4851 0.8400 -0.0004 20 1 2.9191 -3.6476 0.0027 21 1 0.5889 -4.9739 0.8903 22 1 0.5910 -4.9743 -0.8897 23 1 2.4497 -6.3604 2.0906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718865820.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:20 Heat of formation + Delta-G solvation = -18.159645 kcal Electronic energy + Delta-G solvation = -12689.707280 eV Core-core repulsion = 10096.042477 eV Total energy + Delta-G solvation = -2593.664802 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.92781 -39.36267 -35.73340 -34.53580 -33.17267 -31.39607 -28.69193 -27.00459 -25.02760 -21.86593 -21.13556 -19.73411 -19.02775 -17.50075 -16.85370 -16.33092 -15.88622 -15.67322 -15.32052 -14.98929 -14.43146 -13.83346 -13.59119 -13.10890 -12.79754 -12.63868 -12.43045 -12.23240 -11.97933 -11.79928 -10.95531 -10.91189 -10.61692 -10.10030 -9.79356 -9.58160 -8.30212 -6.86779 -0.74914 -0.46728 0.35534 0.42996 1.41262 1.42037 1.48275 1.59811 2.25601 2.45753 3.14205 3.40373 3.58796 3.67441 4.04748 4.62613 4.69602 4.86968 5.32482 5.84220 6.09101 6.22093 6.28351 6.86554 7.46078 8.44824 8.65089 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.003462 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.147121 B = 8086.751482 C = 8364.964044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.541 3.459 10 O -0.627 6.627 11 N -0.751 5.751 12 C 0.212 3.788 13 C -0.222 4.222 14 C 0.054 3.946 15 N -0.458 5.458 16 C -0.003 4.003 17 Br 0.070 6.930 18 S 0.251 5.749 19 H 0.275 0.725 20 H 0.395 0.605 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -16.963 -3.289 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.815 3.185 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.607 4.607 8 H 0.105 0.895 9 C 0.346 3.654 10 O -0.514 6.514 11 N -0.407 5.407 12 C 0.085 3.915 13 C -0.345 4.345 14 C -0.100 4.100 15 N -0.174 5.174 16 C -0.357 4.357 17 Br 0.151 6.849 18 S 0.502 5.498 19 H 0.085 0.915 20 H 0.228 0.772 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.989 -17.653 -4.212 21.216 hybrid contribution -0.004 1.076 1.150 1.575 sum 10.985 -16.577 -3.062 20.121 Atomic orbital electron populations 1.70169 1.09452 1.29001 1.36282 1.26921 0.95492 1.04814 0.91177 0.84995 0.79354 0.75558 0.78560 1.17105 1.19324 1.19376 1.21437 0.94765 0.89934 1.54614 0.89471 1.18574 0.86821 0.83971 0.76077 1.90570 1.16004 1.87711 1.57150 1.45914 1.09276 1.03878 1.81629 1.19136 0.90821 0.79597 1.01926 1.26233 1.06997 1.04815 0.96482 1.21982 0.94602 0.92161 1.01272 1.66348 1.16009 1.16716 1.18357 1.28552 1.06771 1.05086 0.95270 1.96837 1.59036 1.44569 1.84477 1.84061 1.34617 1.23300 1.07841 0.91460 0.77179 0.91124 0.92473 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.01 11.83 21.83 0.26 -48.75 14 2 C 0.03 1.71 5.50 85.30 0.47 2.18 14 3 Si 1.00 39.92 29.56 68.60 2.03 41.95 14 4 H -0.25 -9.22 7.11 99.48 0.71 -8.51 14 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 14 6 H -0.27 -10.41 7.11 99.48 0.71 -9.70 14 7 C -0.57 -31.44 9.54 24.83 0.24 -31.20 14 8 H 0.09 4.32 7.85 -2.91 -0.02 4.29 14 9 C 0.54 30.22 7.75 86.36 0.67 30.89 14 10 O -0.63 -40.57 15.02 -4.30 -0.06 -40.63 14 11 N -0.75 -32.03 5.54 -471.14 -2.61 -34.65 14 12 C 0.21 7.59 6.20 85.63 0.53 8.13 14 13 C -0.22 -6.25 5.96 24.63 0.15 -6.11 14 14 C 0.05 1.43 11.25 83.64 0.94 2.37 14 15 N -0.46 -12.45 10.55 -198.61 -2.10 -14.55 14 16 C 0.00 -0.07 7.89 130.64 1.03 0.96 14 17 Br 0.07 1.34 34.13 -20.37 -0.70 0.65 14 18 S 0.25 5.92 23.22 -56.49 -1.31 4.61 14 19 H 0.28 14.86 8.29 -92.71 -0.77 14.09 14 20 H 0.39 14.84 8.44 -92.71 -0.78 14.06 14 21 H 0.07 2.63 8.14 -2.38 -0.02 2.61 14 22 H 0.06 2.16 8.14 -2.38 -0.02 2.14 14 23 H 0.20 4.61 8.06 -2.91 -0.02 4.59 14 Total: -1.00 -70.27 254.18 0.02 -70.25 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.48 Total: 13.90 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.02 Total: 7.22 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -4.45 Total: -97.95 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.06 Total: -40.63 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -1.31 Total: 4.61 kcal Atomic # 35 Polarization: 1.34 SS G_CDS: -0.70 Total: 0.65 kcal Total: -70.27 0.02 -70.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718865820.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.094 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds