Wall clock time and date at job start Tue Mar 31 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48493 * 109.47443 * 270.00178 * 3 2 1 5 5 H 1.48507 * 109.47075 * 30.00330 * 3 2 1 6 6 H 1.48501 * 109.47241 * 150.00004 * 3 2 1 7 7 C 1.38793 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00425 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00060 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46963 * 180.02562 * 10 9 7 12 12 O 1.20827 * 120.00154 * 359.97438 * 11 10 9 13 13 O 1.34242 * 119.99731 * 180.02562 * 11 10 9 14 14 C 1.35966 * 116.99904 * 185.37944 * 13 11 10 15 15 C 1.38669 * 120.05622 * 260.95999 * 14 13 11 16 16 C 1.38273 * 119.95685 * 180.32139 * 15 14 13 17 17 Cl 1.73601 * 119.96538 * 179.97438 * 16 15 14 18 18 C 1.38386 * 120.07055 * 359.93136 * 16 15 14 19 19 C 1.38231 * 120.11530 * 0.04311 * 18 16 15 20 20 C 1.38342 * 120.04402 * 0.02562 * 19 18 16 21 21 F 1.35103 * 120.03491 * 179.97438 * 20 19 18 22 22 H 0.97007 * 120.00034 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46909 * 60.00223 * 10 9 7 24 24 H 1.08998 * 109.46678 * 299.99977 * 10 9 7 25 25 H 1.07997 * 120.01965 * 0.24745 * 15 14 13 26 26 H 1.08003 * 119.94188 * 180.02562 * 18 16 15 27 27 H 1.08010 * 119.97788 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7957 -5.5015 -0.0011 13 8 2.8409 -6.3389 -0.0008 14 6 2.3023 -7.5821 -0.1150 15 6 2.1132 -8.3636 1.0149 16 6 1.5715 -9.6302 0.8956 17 17 1.3353 -10.6089 2.3099 18 6 1.2166 -10.1181 -0.3498 19 6 1.4034 -9.3415 -1.4779 20 6 1.9463 -8.0741 -1.3643 21 9 2.1292 -7.3154 -2.4671 22 1 -0.4850 0.8401 0.0004 23 1 3.1245 -3.7313 0.8894 24 1 3.1245 -3.7312 -0.8905 25 1 2.3900 -7.9836 1.9872 26 1 0.7933 -11.1076 -0.4405 27 1 1.1260 -9.7247 -2.4489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735453921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:01 Heat of formation + Delta-G solvation = -101.536472 kcal Electronic energy + Delta-G solvation = -17523.593176 eV Core-core repulsion = 14120.820608 eV Total energy + Delta-G solvation = -3402.772569 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.997 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.15632 -41.16501 -38.97390 -36.99665 -36.43929 -32.53272 -31.35786 -30.58497 -29.37316 -25.62797 -23.94051 -23.31662 -21.32473 -18.52063 -18.02520 -17.63424 -17.46097 -16.65947 -15.92321 -15.55158 -15.51440 -14.88661 -14.58331 -14.25755 -13.87074 -13.65072 -13.28778 -13.16152 -12.79831 -12.56340 -12.04684 -11.54981 -11.34158 -11.15718 -11.10558 -11.03052 -10.87654 -10.39299 -9.97725 -9.40845 -9.15921 -8.87290 -8.44265 -6.67408 -6.31881 -4.05790 0.46277 0.62279 1.66285 2.32311 2.46725 3.03494 3.18338 3.22815 3.26620 3.42360 3.76963 4.09891 4.25382 4.51278 4.62462 4.80042 5.04219 5.16715 5.29332 5.49735 5.55492 5.57646 5.65936 5.68353 5.95940 6.10357 6.55172 7.51039 7.94133 8.25696 9.13596 10.75580 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.003379 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.690700 B = 8284.750229 C = 8690.369521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.923 3.077 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.078 0.922 9 S -0.054 6.054 10 C -0.126 4.126 11 C 0.476 3.524 12 O -0.464 6.464 13 O -0.291 6.291 14 C 0.074 3.926 15 C -0.083 4.083 16 C -0.035 4.035 17 Cl -0.055 7.055 18 C -0.081 4.081 19 C -0.129 4.129 20 C 0.103 3.897 21 F -0.121 7.121 22 H 0.270 0.730 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.153 0.847 26 H 0.149 0.851 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -20.427 0.212 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.749 3.251 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.685 4.685 8 H 0.096 0.904 9 S 0.172 5.828 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.346 6.346 13 O -0.208 6.208 14 C 0.031 3.969 15 C -0.102 4.102 16 C -0.062 4.062 17 Cl -0.026 7.026 18 C -0.100 4.100 19 C -0.148 4.148 20 C 0.083 3.917 21 F -0.100 7.100 22 H 0.080 0.920 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.170 0.830 26 H 0.167 0.833 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.387 -20.628 0.317 20.907 hybrid contribution 1.859 1.288 -0.088 2.263 sum 5.246 -19.341 0.229 20.041 Atomic orbital electron populations 1.70007 1.06006 1.27751 1.46393 1.25012 0.95090 0.99171 0.94235 0.86096 0.79391 0.81143 0.78471 1.20138 1.20669 1.19543 1.22830 0.95062 0.90958 1.59666 0.90435 1.85481 1.03812 0.96571 1.96928 1.23352 1.07476 0.89528 1.06986 1.23965 0.85305 0.86623 0.72308 1.90713 1.16458 1.84797 1.42635 1.84754 1.39640 1.12021 1.84338 1.18333 1.01224 0.85894 0.91494 1.21014 0.97614 0.92687 0.98901 1.20638 1.03682 0.92916 0.88983 1.98391 1.95514 1.69544 1.39112 1.20965 0.98712 1.00718 0.89592 1.21031 1.00912 0.92223 1.00662 1.18044 1.00261 0.90873 0.82496 1.91570 1.92659 1.75130 1.50610 0.91987 0.87362 0.87362 0.82965 0.83321 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.50 13.22 55.49 0.73 -24.76 15 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 15 3 Si 0.92 20.93 29.55 -169.99 -5.02 15.90 15 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.54 -14.85 9.50 30.94 0.29 -14.55 15 8 H 0.08 2.02 7.80 -52.48 -0.41 1.61 15 9 S -0.05 -1.43 20.58 -107.50 -2.21 -3.64 15 10 C -0.13 -2.52 6.27 36.01 0.23 -2.29 15 11 C 0.48 9.18 7.88 36.01 0.28 9.46 15 12 O -0.46 -10.22 15.60 -18.75 -0.29 -10.51 15 13 O -0.29 -4.78 9.89 -23.69 -0.23 -5.02 15 14 C 0.07 1.08 4.96 -39.17 -0.19 0.88 15 15 C -0.08 -1.01 9.77 -39.41 -0.38 -1.40 15 16 C -0.04 -0.36 6.32 -39.51 -0.25 -0.61 15 17 Cl -0.05 -0.50 28.95 -51.86 -1.50 -2.00 15 18 C -0.08 -0.71 9.82 -39.53 -0.39 -1.10 15 19 C -0.13 -1.28 10.02 -39.55 -0.40 -1.67 15 20 C 0.10 1.41 7.26 -39.29 -0.29 1.12 15 21 F -0.12 -1.86 17.11 2.25 0.04 -1.82 15 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.11 1.96 8.14 -51.92 -0.42 1.54 15 24 H 0.11 2.00 8.14 -51.92 -0.42 1.58 15 25 H 0.15 1.67 8.06 -52.49 -0.42 1.24 15 26 H 0.15 0.86 8.06 -52.48 -0.42 0.43 15 27 H 0.15 1.08 8.06 -52.48 -0.42 0.65 15 LS Contribution 290.08 15.07 4.37 4.37 Total: -1.00 -31.76 290.08 -6.97 -38.73 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: -1.66 Total: -3.07 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.19 Total: -8.18 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.73 Total: -24.76 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.53 Total: -15.53 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.76 -6.97 -38.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735453921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.808 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds