Wall clock time and date at job start Tue Mar 31 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48493 * 109.47443 * 270.00178 * 3 2 1 5 5 H 1.48507 * 109.47075 * 30.00330 * 3 2 1 6 6 H 1.48501 * 109.47241 * 150.00004 * 3 2 1 7 7 C 1.38793 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00425 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00060 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46963 * 180.02562 * 10 9 7 12 12 O 1.20827 * 120.00154 * 359.97438 * 11 10 9 13 13 O 1.34242 * 119.99731 * 180.02562 * 11 10 9 14 14 C 1.35966 * 116.99904 * 185.37944 * 13 11 10 15 15 C 1.38669 * 120.05622 * 260.95999 * 14 13 11 16 16 C 1.38273 * 119.95685 * 180.32139 * 15 14 13 17 17 Cl 1.73601 * 119.96538 * 179.97438 * 16 15 14 18 18 C 1.38386 * 120.07055 * 359.93136 * 16 15 14 19 19 C 1.38231 * 120.11530 * 0.04311 * 18 16 15 20 20 C 1.38342 * 120.04402 * 0.02562 * 19 18 16 21 21 F 1.35103 * 120.03491 * 179.97438 * 20 19 18 22 22 H 0.97007 * 120.00034 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46909 * 60.00223 * 10 9 7 24 24 H 1.08998 * 109.46678 * 299.99977 * 10 9 7 25 25 H 1.07997 * 120.01965 * 0.24745 * 15 14 13 26 26 H 1.08003 * 119.94188 * 180.02562 * 18 16 15 27 27 H 1.08010 * 119.97788 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7957 -5.5015 -0.0011 13 8 2.8409 -6.3389 -0.0008 14 6 2.3023 -7.5821 -0.1150 15 6 2.1132 -8.3636 1.0149 16 6 1.5715 -9.6302 0.8956 17 17 1.3353 -10.6089 2.3099 18 6 1.2166 -10.1181 -0.3498 19 6 1.4034 -9.3415 -1.4779 20 6 1.9463 -8.0741 -1.3643 21 9 2.1292 -7.3154 -2.4671 22 1 -0.4850 0.8401 0.0004 23 1 3.1245 -3.7313 0.8894 24 1 3.1245 -3.7312 -0.8905 25 1 2.3900 -7.9836 1.9872 26 1 0.7933 -11.1076 -0.4405 27 1 1.1260 -9.7247 -2.4489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735453921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:01 Heat of formation + Delta-G solvation = -119.189437 kcal Electronic energy + Delta-G solvation = -17524.358666 eV Core-core repulsion = 14120.820608 eV Total energy + Delta-G solvation = -3403.538059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.997 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.23477 -42.47226 -39.99795 -38.22224 -37.39654 -34.63152 -32.42749 -31.68230 -30.65400 -27.74267 -25.04526 -24.26728 -22.56243 -20.07335 -19.64213 -18.71822 -18.53153 -18.07155 -16.95970 -16.91487 -16.84109 -16.72823 -16.13457 -15.41302 -14.96279 -14.84589 -14.62562 -14.34800 -14.26391 -13.76118 -13.23671 -13.21467 -12.90905 -12.70397 -12.41362 -12.21063 -12.12576 -11.90326 -11.81990 -11.17659 -10.45016 -10.31595 -9.79972 -8.77812 -8.39437 -6.20143 -0.50789 -0.25682 0.78361 0.84379 1.02511 1.40248 1.43107 1.54654 1.72950 2.19595 2.23010 2.81731 2.96004 3.19513 3.41893 3.54269 3.74954 3.89802 4.08076 4.21579 4.34929 4.47250 4.65782 4.78148 4.85428 4.98729 5.39728 5.42700 6.16392 6.50431 7.02355 8.69792 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.003379 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.690700 B = 8284.750229 C = 8690.369521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.548 4.548 8 H 0.088 0.912 9 S -0.133 6.133 10 C -0.106 4.106 11 C 0.484 3.516 12 O -0.498 6.498 13 O -0.282 6.282 14 C 0.034 3.966 15 C -0.088 4.088 16 C -0.037 4.037 17 Cl -0.041 7.041 18 C -0.062 4.062 19 C -0.118 4.118 20 C 0.078 3.922 21 F -0.138 7.138 22 H 0.273 0.727 23 H 0.131 0.869 24 H 0.126 0.874 25 H 0.157 0.843 26 H 0.189 0.811 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -21.875 0.213 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.696 4.696 8 H 0.106 0.894 9 S 0.095 5.905 10 C -0.254 4.254 11 C 0.327 3.673 12 O -0.383 6.383 13 O -0.198 6.198 14 C -0.009 4.009 15 C -0.107 4.107 16 C -0.064 4.064 17 Cl -0.012 7.012 18 C -0.080 4.080 19 C -0.136 4.136 20 C 0.058 3.942 21 F -0.117 7.117 22 H 0.082 0.918 23 H 0.149 0.851 24 H 0.144 0.856 25 H 0.175 0.825 26 H 0.206 0.794 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.491 -22.105 0.321 22.559 hybrid contribution 1.529 1.474 -0.054 2.124 sum 6.020 -20.632 0.267 21.494 Atomic orbital electron populations 1.70161 1.07939 1.28868 1.47603 1.26131 0.96005 1.03319 0.93479 0.84914 0.78209 0.75792 0.78843 1.19300 1.20231 1.18120 1.23190 0.95592 0.91328 1.59470 0.89377 1.85581 1.08709 0.99049 1.97207 1.23134 1.04758 0.88654 1.08879 1.23700 0.84941 0.87138 0.71541 1.90691 1.17858 1.85414 1.44342 1.84710 1.38743 1.12590 1.83779 1.18695 1.04183 0.85107 0.92942 1.21119 0.97710 0.93435 0.98450 1.20799 1.02964 0.92409 0.90214 1.98402 1.95345 1.68859 1.38560 1.21452 0.96439 1.01814 0.88296 1.21434 0.99046 0.90518 1.02621 1.18470 1.01668 0.92313 0.81724 1.91521 1.93003 1.75868 1.51293 0.91792 0.85120 0.85634 0.82488 0.79382 0.79622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.57 13.22 21.65 0.29 -54.29 15 2 C 0.02 0.88 5.49 84.86 0.47 1.35 15 3 Si 1.00 42.68 29.55 68.60 2.03 44.71 15 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 7 C -0.55 -30.49 9.50 67.95 0.65 -29.85 15 8 H 0.09 4.53 7.80 -2.91 -0.02 4.51 15 9 S -0.13 -7.15 20.58 -56.49 -1.16 -8.31 15 10 C -0.11 -4.26 6.27 71.24 0.45 -3.81 15 11 C 0.48 18.90 7.88 71.24 0.56 19.46 15 12 O -0.50 -22.57 15.60 21.96 0.34 -22.23 15 13 O -0.28 -9.34 9.89 4.28 0.04 -9.30 15 14 C 0.03 0.97 4.96 22.53 0.11 1.08 15 15 C -0.09 -2.07 9.77 22.38 0.22 -1.85 15 16 C -0.04 -0.68 6.32 22.31 0.14 -0.53 15 17 Cl -0.04 -0.65 28.95 -2.72 -0.08 -0.73 15 18 C -0.06 -0.87 9.82 22.30 0.22 -0.65 15 19 C -0.12 -2.02 10.02 22.29 0.22 -1.79 15 20 C 0.08 2.08 7.26 22.46 0.16 2.24 15 21 F -0.14 -4.25 17.11 44.97 0.77 -3.48 15 22 H 0.27 15.19 8.31 -92.70 -0.77 14.42 15 23 H 0.13 4.64 8.14 -2.40 -0.02 4.62 15 24 H 0.13 4.59 8.14 -2.40 -0.02 4.57 15 25 H 0.16 3.38 8.06 -2.91 -0.02 3.35 15 26 H 0.19 1.19 8.06 -2.91 -0.02 1.17 15 27 H 0.19 1.92 8.06 -2.91 -0.02 1.89 15 Total: -1.00 -70.79 290.08 6.64 -64.15 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 1.22 Total: 3.84 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 3.20 Total: -14.36 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.29 Total: -54.29 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: 0.38 Total: -31.53 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.77 Total: -3.48 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -1.16 Total: -8.31 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -70.79 6.64 -64.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735453921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.041 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds