Wall clock time and date at job start Tue Mar 31 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46954 * 2 1 4 4 C 1.38233 * 119.99571 * 269.72252 * 3 2 1 5 5 C 1.38231 * 119.99829 * 179.74539 * 4 3 2 6 6 C 1.38236 * 119.99927 * 0.53021 * 5 4 3 7 7 C 1.50702 * 119.99699 * 179.76698 * 6 5 4 8 8 C 1.53006 * 109.47244 * 269.97530 * 7 6 5 9 9 N 1.46896 * 109.47171 * 184.62321 * 8 7 6 10 10 C 1.46902 * 110.99923 * 215.49257 * 9 8 7 11 11 C 1.50705 * 109.46874 * 164.15880 * 10 9 8 12 12 H 1.08000 * 120.00236 * 4.93003 * 11 10 9 13 13 C 1.37871 * 119.99578 * 184.92865 * 11 10 9 14 14 N 1.31523 * 119.99884 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00342 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47420 * 89.99791 * 15 13 11 17 17 H 1.48501 * 109.47380 * 209.99773 * 15 13 11 18 18 H 1.48498 * 109.47346 * 329.99368 * 15 13 11 19 19 C 1.46900 * 110.99651 * 91.53789 * 9 8 7 20 20 C 1.53002 * 109.47307 * 282.84346 * 19 9 8 21 21 C 1.52998 * 109.46858 * 182.06854 * 20 19 9 22 22 C 1.52994 * 109.47170 * 302.07028 * 20 19 9 23 23 C 1.38231 * 119.99873 * 359.74987 * 6 5 4 24 24 C 1.38227 * 120.00318 * 90.00333 * 3 2 1 25 25 H 1.09000 * 109.47240 * 300.00592 * 1 2 3 26 26 H 1.09004 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47170 * 60.00366 * 1 2 3 28 28 H 1.09005 * 109.47038 * 119.99221 * 2 1 3 29 29 H 1.09000 * 109.47240 * 239.99408 * 2 1 3 30 30 H 1.08006 * 120.00099 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.00202 * 180.29406 * 5 4 3 32 32 H 1.08995 * 109.47656 * 29.97916 * 7 6 5 33 33 H 1.09007 * 109.46549 * 149.98232 * 7 6 5 34 34 H 1.08998 * 109.47348 * 304.63058 * 8 7 6 35 35 H 1.09004 * 109.46600 * 64.62676 * 8 7 6 36 36 H 1.09000 * 109.46852 * 284.15509 * 10 9 8 37 37 H 1.08990 * 109.47285 * 44.15788 * 10 9 8 38 38 H 0.96994 * 120.00409 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.47382 * 42.85029 * 19 9 8 40 40 H 1.09001 * 109.46884 * 162.84474 * 19 9 8 41 41 H 1.08998 * 109.46800 * 62.07227 * 20 19 9 42 42 H 1.09001 * 109.47613 * 60.00650 * 21 20 19 43 43 H 1.09004 * 109.46846 * 179.97438 * 21 20 19 44 44 H 1.09003 * 109.47523 * 299.99711 * 21 20 19 45 45 H 1.09000 * 109.47241 * 184.87083 * 22 20 19 46 46 H 1.09002 * 109.47049 * 304.86693 * 22 20 19 47 47 H 1.09000 * 109.47108 * 64.86840 * 22 20 19 48 48 H 1.08001 * 120.00035 * 180.02562 * 23 6 5 49 49 H 1.08005 * 120.00010 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7238 3.3755 -1.1973 6 6 2.9542 4.0273 -0.0002 7 6 3.4560 5.4483 -0.0003 8 6 4.9861 5.4489 0.0000 9 7 5.4752 6.8295 0.1115 10 6 6.7036 7.0177 -0.6719 11 6 6.9601 8.4911 -0.8577 12 1 6.3248 9.2155 -0.3699 13 6 8.0059 8.9141 -1.6503 14 7 8.2295 10.2000 -1.8128 15 14 9.1043 7.6611 -2.4945 16 1 8.5478 7.3367 -3.8325 17 1 10.4695 8.2245 -2.6496 18 1 9.1691 6.4261 -1.6725 19 6 5.6849 7.2018 1.5170 20 6 4.3353 7.5030 2.1717 21 6 4.5578 7.9405 3.6208 22 6 3.6342 8.6243 1.4023 23 6 2.7239 3.3756 1.1970 24 6 2.2628 2.0725 1.1970 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 2.0920 1.5599 -2.1325 31 1 2.9036 3.8847 -2.1326 32 1 3.0927 5.9619 -0.8904 33 1 3.0924 5.9621 0.8896 34 1 5.3495 4.8652 0.8458 35 1 5.3497 5.0084 -0.9284 36 1 7.5438 6.5663 -0.1442 37 1 6.5893 6.5431 -1.6464 38 1 8.9649 10.4977 -2.3707 39 1 6.1681 6.3783 2.0428 40 1 6.3189 8.0870 1.5676 41 1 3.7148 6.6070 2.1538 42 1 5.1782 8.8365 3.6387 43 1 3.5963 8.1555 4.0871 44 1 5.0572 7.1416 4.1690 45 1 2.7137 8.8982 1.9178 46 1 4.2912 9.4922 1.3460 47 1 3.3981 8.2812 0.3950 48 1 2.9035 3.8850 2.1323 49 1 2.0825 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:44 Heat of formation + Delta-G solvation = 0.627423 kcal Electronic energy + Delta-G solvation = -23164.329629 eV Core-core repulsion = 20090.178543 eV Total energy + Delta-G solvation = -3074.151086 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.59044 -37.80441 -34.90199 -33.99754 -32.51930 -31.35012 -30.89151 -28.37524 -27.08685 -26.63237 -25.00450 -23.48867 -22.69615 -21.80820 -20.56202 -20.20835 -19.35778 -16.72227 -16.15300 -15.93689 -15.28427 -15.15284 -14.53919 -14.33282 -13.89059 -13.79370 -13.64478 -13.42106 -13.36457 -13.09773 -12.74383 -12.58930 -12.26472 -12.25308 -11.96223 -11.82037 -11.57750 -11.48883 -11.31367 -11.14499 -10.92173 -10.82534 -10.77032 -10.68469 -10.50930 -10.32557 -9.96158 -9.79347 -9.65229 -9.25237 -8.88598 -8.54487 -8.42509 -7.32650 -6.02899 -3.99237 1.37222 1.43895 3.29196 3.36892 3.39055 3.76624 4.43745 4.59560 4.70514 4.71241 4.99993 5.02562 5.14024 5.19118 5.28593 5.32126 5.34697 5.43110 5.46002 5.51735 5.58505 5.65502 5.70198 5.78763 5.82070 5.90280 5.93521 5.99880 6.02120 6.10119 6.14051 6.17601 6.29474 6.35693 6.42988 6.48107 6.51487 6.57859 6.60197 6.61942 6.79690 6.82738 6.95009 6.99668 7.05380 7.11034 7.64665 7.96647 8.10679 8.69328 9.07526 9.59529 11.10333 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.003769 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.450668 B = 7427.065942 C = 8710.517432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.096 4.096 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.073 4.073 7 C -0.084 4.084 8 C 0.060 3.940 9 N -0.524 5.524 10 C 0.164 3.836 11 C -0.504 4.504 12 H 0.082 0.918 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.873 3.127 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.067 3.933 20 C -0.095 4.095 21 C -0.146 4.146 22 C -0.132 4.132 23 C -0.116 4.116 24 C -0.118 4.118 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.030 0.970 35 H 0.060 0.940 36 H -0.015 1.015 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.018 0.982 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.033 0.967 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.119 0.881 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 -16.870 6.430 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.074 4.074 7 C -0.122 4.122 8 C -0.069 4.069 9 N -0.247 5.247 10 C 0.037 3.963 11 C -0.542 4.542 12 H 0.100 0.900 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.700 3.300 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.062 4.062 20 C -0.113 4.113 21 C -0.204 4.204 22 C -0.189 4.189 23 C -0.134 4.134 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.003 0.997 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.137 0.863 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.748 -16.419 6.130 22.274 hybrid contribution 1.377 -1.126 -0.252 1.796 sum -12.371 -17.545 5.878 22.258 Atomic orbital electron populations 1.21747 0.94916 1.01439 1.02239 1.20510 0.96043 0.92950 1.02546 1.19816 1.00332 0.96142 0.93324 1.20984 1.00274 0.94976 0.97288 1.21118 0.99474 0.94669 0.97985 1.20101 0.97621 0.96796 0.92888 1.20928 0.96215 0.91001 1.04049 1.22116 0.93871 0.90643 1.00221 1.61793 1.33466 1.19679 1.09738 1.20216 0.85605 0.98323 0.92107 1.21048 1.13530 0.90142 1.29475 0.89995 1.24893 0.97210 0.94952 0.96315 1.69893 1.30913 1.13598 1.39652 0.86901 0.80399 0.82184 0.80478 1.20212 1.21288 1.19413 1.22180 0.95824 1.00410 0.87760 1.21273 0.97303 0.98811 0.93950 1.21830 1.00968 1.01185 0.96413 1.21657 0.98406 0.98239 1.00633 1.21049 0.99818 0.94728 0.97769 1.20957 1.00403 0.94981 0.97257 0.92601 0.92620 0.92568 0.91309 0.91276 0.86501 0.85998 0.90521 0.89875 0.95156 0.92171 0.99698 0.95944 0.92748 0.96381 0.89636 0.91716 0.92569 0.93228 0.93460 0.94776 0.92656 0.91298 0.86284 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.08 -0.68 6.07 -27.88 -0.17 -0.85 16 3 C -0.10 -1.03 5.13 -104.63 -0.54 -1.57 16 4 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16 5 C -0.11 -1.45 9.70 -39.58 -0.38 -1.83 16 6 C -0.07 -0.98 5.13 -104.62 -0.54 -1.51 16 7 C -0.08 -1.23 5.27 -27.88 -0.15 -1.37 16 8 C 0.06 1.03 5.04 -3.82 -0.02 1.01 16 9 N -0.52 -10.57 3.52 -236.07 -0.83 -11.40 16 10 C 0.16 3.93 3.73 -4.97 -0.02 3.91 16 11 C -0.50 -14.11 8.96 -34.44 -0.31 -14.42 16 12 H 0.08 2.49 7.80 -52.49 -0.41 2.08 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 15 Si 0.87 21.57 27.37 -169.99 -4.65 16.92 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.46 6.69 56.52 0.38 -6.08 16 19 C 0.07 1.24 4.25 -3.82 -0.02 1.22 16 20 C -0.09 -1.46 2.47 -90.62 -0.22 -1.68 16 21 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 22 C -0.13 -2.15 8.75 37.15 0.33 -1.83 16 23 C -0.12 -1.41 9.70 -39.59 -0.38 -1.80 16 24 C -0.12 -1.30 9.70 -39.59 -0.38 -1.69 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.08 1.18 4.60 -51.92 -0.24 0.94 16 34 H 0.03 0.50 7.42 -51.93 -0.39 0.12 16 35 H 0.06 1.06 7.39 -51.93 -0.38 0.67 16 36 H -0.01 -0.36 7.45 -51.93 -0.39 -0.75 16 37 H 0.02 0.54 6.77 -51.93 -0.35 0.19 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.02 0.32 7.58 -51.93 -0.39 -0.07 16 40 H 0.09 1.82 6.95 -51.93 -0.36 1.46 16 41 H 0.06 0.93 5.33 -51.93 -0.28 0.66 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 48 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -29.75 382.65 -10.59 -40.33 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -9.07 Total: -0.27 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -2.58 Total: -24.59 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.06 Total: -38.16 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.65 Total: 16.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.75 -10.59 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.962 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds