Wall clock time and date at job start Tue Mar 31 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46954 * 2 1 4 4 C 1.38233 * 119.99571 * 269.72252 * 3 2 1 5 5 C 1.38231 * 119.99829 * 179.74539 * 4 3 2 6 6 C 1.38236 * 119.99927 * 0.53021 * 5 4 3 7 7 C 1.50702 * 119.99699 * 179.76698 * 6 5 4 8 8 C 1.53006 * 109.47244 * 269.97530 * 7 6 5 9 9 N 1.46896 * 109.47171 * 184.62321 * 8 7 6 10 10 C 1.46902 * 110.99923 * 215.49257 * 9 8 7 11 11 C 1.50705 * 109.46874 * 164.15880 * 10 9 8 12 12 H 1.08000 * 120.00236 * 4.93003 * 11 10 9 13 13 C 1.37871 * 119.99578 * 184.92865 * 11 10 9 14 14 N 1.31523 * 119.99884 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00342 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47420 * 89.99791 * 15 13 11 17 17 H 1.48501 * 109.47380 * 209.99773 * 15 13 11 18 18 H 1.48498 * 109.47346 * 329.99368 * 15 13 11 19 19 C 1.46900 * 110.99651 * 91.53789 * 9 8 7 20 20 C 1.53002 * 109.47307 * 282.84346 * 19 9 8 21 21 C 1.52998 * 109.46858 * 182.06854 * 20 19 9 22 22 C 1.52994 * 109.47170 * 302.07028 * 20 19 9 23 23 C 1.38231 * 119.99873 * 359.74987 * 6 5 4 24 24 C 1.38227 * 120.00318 * 90.00333 * 3 2 1 25 25 H 1.09000 * 109.47240 * 300.00592 * 1 2 3 26 26 H 1.09004 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47170 * 60.00366 * 1 2 3 28 28 H 1.09005 * 109.47038 * 119.99221 * 2 1 3 29 29 H 1.09000 * 109.47240 * 239.99408 * 2 1 3 30 30 H 1.08006 * 120.00099 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.00202 * 180.29406 * 5 4 3 32 32 H 1.08995 * 109.47656 * 29.97916 * 7 6 5 33 33 H 1.09007 * 109.46549 * 149.98232 * 7 6 5 34 34 H 1.08998 * 109.47348 * 304.63058 * 8 7 6 35 35 H 1.09004 * 109.46600 * 64.62676 * 8 7 6 36 36 H 1.09000 * 109.46852 * 284.15509 * 10 9 8 37 37 H 1.08990 * 109.47285 * 44.15788 * 10 9 8 38 38 H 0.96994 * 120.00409 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.47382 * 42.85029 * 19 9 8 40 40 H 1.09001 * 109.46884 * 162.84474 * 19 9 8 41 41 H 1.08998 * 109.46800 * 62.07227 * 20 19 9 42 42 H 1.09001 * 109.47613 * 60.00650 * 21 20 19 43 43 H 1.09004 * 109.46846 * 179.97438 * 21 20 19 44 44 H 1.09003 * 109.47523 * 299.99711 * 21 20 19 45 45 H 1.09000 * 109.47241 * 184.87083 * 22 20 19 46 46 H 1.09002 * 109.47049 * 304.86693 * 22 20 19 47 47 H 1.09000 * 109.47108 * 64.86840 * 22 20 19 48 48 H 1.08001 * 120.00035 * 180.02562 * 23 6 5 49 49 H 1.08005 * 120.00010 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7238 3.3755 -1.1973 6 6 2.9542 4.0273 -0.0002 7 6 3.4560 5.4483 -0.0003 8 6 4.9861 5.4489 0.0000 9 7 5.4752 6.8295 0.1115 10 6 6.7036 7.0177 -0.6719 11 6 6.9601 8.4911 -0.8577 12 1 6.3248 9.2155 -0.3699 13 6 8.0059 8.9141 -1.6503 14 7 8.2295 10.2000 -1.8128 15 14 9.1043 7.6611 -2.4945 16 1 8.5478 7.3367 -3.8325 17 1 10.4695 8.2245 -2.6496 18 1 9.1691 6.4261 -1.6725 19 6 5.6849 7.2018 1.5170 20 6 4.3353 7.5030 2.1717 21 6 4.5578 7.9405 3.6208 22 6 3.6342 8.6243 1.4023 23 6 2.7239 3.3756 1.1970 24 6 2.2628 2.0725 1.1970 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 2.0920 1.5599 -2.1325 31 1 2.9036 3.8847 -2.1326 32 1 3.0927 5.9619 -0.8904 33 1 3.0924 5.9621 0.8896 34 1 5.3495 4.8652 0.8458 35 1 5.3497 5.0084 -0.9284 36 1 7.5438 6.5663 -0.1442 37 1 6.5893 6.5431 -1.6464 38 1 8.9649 10.4977 -2.3707 39 1 6.1681 6.3783 2.0428 40 1 6.3189 8.0870 1.5676 41 1 3.7148 6.6070 2.1538 42 1 5.1782 8.8365 3.6387 43 1 3.5963 8.1555 4.0871 44 1 5.0572 7.1416 4.1690 45 1 2.7137 8.8982 1.9178 46 1 4.2912 9.4922 1.3460 47 1 3.3981 8.2812 0.3950 48 1 2.9035 3.8850 2.1323 49 1 2.0825 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739914262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:43 Heat of formation + Delta-G solvation = -13.376070 kcal Electronic energy + Delta-G solvation = -23164.936866 eV Core-core repulsion = 20090.178543 eV Total energy + Delta-G solvation = -3074.758323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52496 -39.23991 -35.82599 -35.52832 -34.39243 -32.54052 -31.76178 -29.91398 -28.47137 -27.86722 -26.39967 -24.66051 -23.57157 -23.09763 -22.08067 -21.22952 -20.74142 -18.87574 -17.21687 -17.04682 -16.45723 -16.27406 -16.17116 -15.65174 -15.34451 -14.82377 -14.64633 -14.57325 -14.46364 -14.25918 -14.07233 -13.86585 -13.79872 -13.55996 -13.13331 -12.99934 -12.89202 -12.75989 -12.61310 -12.31722 -12.20372 -12.15444 -11.97426 -11.89736 -11.69400 -11.63342 -11.59608 -11.43426 -11.30217 -10.93376 -10.76346 -9.76855 -9.36225 -8.94944 -8.26764 -6.28516 0.47188 0.55607 1.33314 1.34155 1.44808 2.34156 2.85052 3.05333 3.23339 3.87907 3.91044 4.00939 4.11380 4.16006 4.20357 4.23978 4.34972 4.41407 4.51645 4.54250 4.58488 4.65386 4.66387 4.71816 4.76847 4.77349 4.81445 4.91343 4.99455 5.03884 5.08783 5.09924 5.10926 5.15384 5.20483 5.21134 5.29867 5.31789 5.36209 5.41754 5.54747 5.58579 5.61497 5.71226 5.77569 5.83978 6.04903 6.19174 6.44923 6.69418 6.78431 7.34452 8.89938 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.003769 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.450668 B = 7427.065942 C = 8710.517432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.096 4.096 4 C -0.125 4.125 5 C -0.128 4.128 6 C -0.091 4.091 7 C -0.070 4.070 8 C 0.064 3.936 9 N -0.534 5.534 10 C 0.173 3.827 11 C -0.506 4.506 12 H 0.041 0.959 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.943 3.057 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.255 1.255 19 C 0.069 3.931 20 C -0.087 4.087 21 C -0.142 4.142 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.053 0.947 36 H -0.019 1.019 37 H 0.025 0.975 38 H 0.265 0.735 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.024 0.976 47 H 0.050 0.950 48 H 0.129 0.871 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.571 -20.128 7.245 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.092 4.092 7 C -0.108 4.108 8 C -0.064 4.064 9 N -0.258 5.258 10 C 0.046 3.954 11 C -0.545 4.545 12 H 0.059 0.941 13 C -0.189 4.189 14 N -0.590 5.590 15 Si 0.767 3.233 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.179 1.179 19 C -0.059 4.059 20 C -0.105 4.105 21 C -0.200 4.200 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.140 4.140 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.072 0.928 36 H -0.001 1.001 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.069 0.931 48 H 0.147 0.853 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.803 -19.693 6.958 25.600 hybrid contribution 1.612 -0.105 -0.462 1.681 sum -13.191 -19.798 6.497 24.661 Atomic orbital electron populations 1.21731 0.94236 1.02345 1.01840 1.20570 0.96527 0.91387 1.03490 1.20175 0.99134 0.97306 0.92973 1.21221 0.99978 0.94564 0.98479 1.21236 1.00053 0.95476 0.97851 1.19987 0.99310 0.96077 0.93779 1.20713 0.94129 0.92284 1.03629 1.22149 0.95562 0.88525 1.00191 1.61754 1.31489 1.22154 1.10359 1.19971 0.87255 0.95321 0.92855 1.21249 1.12768 0.91760 1.28675 0.94093 1.25796 0.98920 0.96999 0.97217 1.70048 1.32012 1.15922 1.40977 0.85774 0.78162 0.79732 0.79607 1.19092 1.20784 1.17919 1.22175 0.97428 0.99005 0.87338 1.21232 0.95357 0.99158 0.94768 1.21798 1.02175 1.01018 0.94987 1.21591 0.99067 0.97415 1.00324 1.21217 0.99739 0.95352 0.97666 1.21247 0.99765 0.94643 0.98380 0.92865 0.91105 0.93121 0.90231 0.90529 0.84914 0.86180 0.91756 0.89465 0.94254 0.92843 1.00098 0.95705 0.92555 0.95343 0.93429 0.89751 0.93943 0.90936 0.92093 0.91988 0.95695 0.93056 0.85292 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.01 16 2 C -0.08 -1.11 6.07 29.85 0.18 -0.93 16 3 C -0.10 -1.81 5.13 -19.87 -0.10 -1.91 16 4 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 5 C -0.13 -3.10 9.70 22.27 0.22 -2.89 16 6 C -0.09 -2.30 5.13 -19.87 -0.10 -2.40 16 7 C -0.07 -1.98 5.27 29.85 0.16 -1.83 16 8 C 0.06 2.13 5.04 86.31 0.43 2.57 16 9 N -0.53 -21.86 3.52 -900.79 -3.17 -25.03 16 10 C 0.17 8.43 3.73 85.56 0.32 8.75 16 11 C -0.51 -29.53 8.96 25.60 0.23 -29.30 16 12 H 0.04 2.66 7.80 -2.91 -0.02 2.64 16 13 C 0.01 0.45 5.47 84.65 0.46 0.91 16 14 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 15 Si 0.94 44.88 27.37 68.60 1.88 46.76 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.26 -11.47 6.69 99.48 0.67 -10.80 16 19 C 0.07 2.59 4.25 86.30 0.37 2.95 16 20 C -0.09 -2.59 2.47 -10.80 -0.03 -2.62 16 21 C -0.14 -3.57 9.19 71.98 0.66 -2.91 16 22 C -0.13 -4.17 8.75 71.98 0.63 -3.54 16 23 C -0.12 -2.70 9.70 22.27 0.22 -2.48 16 24 C -0.12 -2.37 9.70 22.27 0.22 -2.16 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.92 8.09 -2.38 -0.02 0.90 16 29 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.12 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 33 H 0.09 2.36 4.60 -2.38 -0.01 2.34 16 34 H 0.04 1.25 7.42 -2.39 -0.02 1.23 16 35 H 0.05 1.85 7.39 -2.38 -0.02 1.83 16 36 H -0.02 -0.92 7.45 -2.39 -0.02 -0.94 16 37 H 0.02 1.20 6.77 -2.39 -0.02 1.18 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.03 1.00 7.58 -2.39 -0.02 0.98 16 40 H 0.05 2.14 6.95 -2.39 -0.02 2.12 16 41 H 0.08 2.24 5.33 -2.39 -0.01 2.23 16 42 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.05 1.85 7.51 -2.39 -0.02 1.83 16 48 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 49 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -66.32 382.65 4.63 -61.69 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.83 Total: 17.42 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 4.79 Total: -41.16 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.87 Total: -84.71 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -66.32 4.63 -61.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.315 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds