Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48507 * 109.46817 * 270.00483 * 3 2 1 5 5 H 1.48505 * 109.46975 * 29.99917 * 3 2 1 6 6 H 1.48493 * 109.47356 * 150.00256 * 3 2 1 7 7 C 1.38757 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99362 * 179.97438 * 7 2 1 9 9 O 1.34914 * 120.00677 * 359.97438 * 7 2 1 10 10 C 1.34308 * 117.00624 * 179.97438 * 9 7 2 11 11 O 1.21214 * 119.99915 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00488 * 180.02562 * 10 9 7 13 13 O 1.42894 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.35905 * 116.99735 * 179.97438 * 13 12 10 15 15 C 1.38717 * 120.04369 * 359.73114 * 14 13 12 16 16 C 1.38262 * 119.95812 * 180.29386 * 15 14 13 17 17 Cl 1.73601 * 119.98006 * 179.97438 * 16 15 14 18 18 C 1.38372 * 120.04106 * 359.97438 * 16 15 14 19 19 C 1.38359 * 120.08371 * 359.97438 * 18 16 15 20 20 Cl 1.73599 * 119.97647 * 179.97438 * 19 18 16 21 21 C 1.38260 * 120.04588 * 0.02562 * 19 18 16 22 22 H 0.96999 * 120.00394 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47294 * 59.99937 * 12 10 9 24 24 H 1.09002 * 109.46898 * 300.00176 * 12 10 9 25 25 H 1.07999 * 120.01876 * 0.24223 * 15 14 13 26 26 H 1.08000 * 119.95684 * 179.97438 * 18 16 15 27 27 H 1.08003 * 120.02482 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4958 2.0464 -1.4002 5 1 1.4459 2.6527 0.7000 6 1 3.5460 1.4401 0.6999 7 6 2.0081 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4966 -0.0016 11 8 3.2756 -3.4332 -0.0020 12 6 1.3810 -4.8393 -0.0023 13 8 2.3651 -5.8753 -0.0028 14 6 1.9121 -7.1566 -0.0029 15 6 0.5485 -7.4111 0.0032 16 6 0.0895 -8.7154 0.0092 17 17 -1.6169 -9.0345 0.0175 18 6 0.9895 -9.7664 0.0087 19 6 2.3500 -9.5146 0.0016 20 17 3.4766 -10.8353 0.0017 21 6 2.8128 -8.2117 -0.0044 22 1 -0.4851 0.8400 0.0004 23 1 0.7578 -4.9292 -0.8920 24 1 0.7585 -4.9304 0.8879 25 1 -0.1542 -6.5910 0.0040 26 1 0.6296 -10.7846 0.0139 27 1 3.8748 -8.0155 -0.0095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745599089.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -102.175384 kcal Electronic energy + Delta-G solvation = -17408.209680 eV Core-core repulsion = 13990.992910 eV Total energy + Delta-G solvation = -3417.216770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50904 -39.09757 -37.91874 -37.03392 -36.25032 -35.17259 -32.27478 -31.14548 -30.46490 -28.50156 -25.27883 -23.18033 -22.75123 -20.41165 -18.74831 -17.82339 -16.98756 -16.43519 -16.28349 -16.18767 -15.35306 -14.84021 -14.54619 -14.42005 -14.39181 -13.71406 -13.39829 -12.61398 -12.49449 -12.36922 -11.86955 -11.71766 -11.58948 -11.37344 -11.22798 -11.20913 -10.72785 -10.50019 -10.46239 -9.95062 -9.17358 -9.07339 -8.68605 -8.55874 -6.52000 -4.20788 0.66712 0.90095 1.46512 1.96816 2.73806 3.02044 3.15813 3.17450 3.22385 3.34323 3.94509 4.44390 4.60255 4.69072 4.73090 4.80098 4.98865 5.15736 5.21022 5.35897 5.70561 5.77390 5.83057 6.02756 6.42988 7.14355 7.29038 7.82213 8.55052 8.96168 9.66454 10.65418 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.003294 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.000941 B = 8497.510479 C = 9619.358414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.044 3.956 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.383 4.383 8 H 0.099 0.901 9 O -0.207 6.207 10 C 0.397 3.603 11 O -0.534 6.534 12 C 0.075 3.925 13 O -0.279 6.279 14 C 0.168 3.832 15 C -0.201 4.201 16 C 0.018 3.982 17 Cl -0.054 7.054 18 C -0.147 4.147 19 C 0.015 3.985 20 Cl -0.052 7.052 21 C -0.140 4.140 22 H 0.271 0.729 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -18.884 0.014 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.161 4.161 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.459 4.459 8 H 0.116 0.884 9 O -0.115 6.115 10 C 0.242 3.758 11 O -0.429 6.429 12 C -0.001 4.001 13 O -0.190 6.190 14 C 0.121 3.879 15 C -0.221 4.221 16 C -0.009 4.009 17 Cl -0.025 7.025 18 C -0.167 4.167 19 C -0.012 4.012 20 Cl -0.023 7.023 21 C -0.159 4.159 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.168 0.832 26 H 0.162 0.838 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.951 -18.746 0.020 18.770 hybrid contribution 0.034 0.645 -0.010 0.646 sum -0.917 -18.101 0.011 18.124 Atomic orbital electron populations 1.69984 1.06025 1.27983 1.45915 1.25373 0.95897 0.98899 0.95932 0.85614 0.79039 0.79354 0.78849 1.19753 1.20222 1.18984 1.21271 0.92543 0.79209 1.52896 0.88367 1.83823 1.39040 1.12950 1.75644 1.22282 0.86720 0.86429 0.80407 1.90616 1.15233 1.87624 1.49468 1.21918 0.89721 0.84055 1.04395 1.86175 1.34645 1.10998 1.87231 1.18628 0.90999 0.84745 0.93553 1.21342 0.95245 0.97019 1.08474 1.20385 0.85462 0.93443 1.01600 1.98396 1.11623 1.95847 1.96663 1.20726 0.90344 0.99607 1.05998 1.20277 0.90024 0.88652 1.02263 1.98390 1.60907 1.46305 1.96726 1.20324 1.01151 0.88551 1.05923 0.91865 0.88450 0.88460 0.83198 0.83793 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.67 55.48 0.76 -23.71 15 2 C 0.04 1.19 5.49 -17.53 -0.10 1.10 15 3 Si 0.95 20.74 29.55 -169.99 -5.02 15.72 15 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.38 -11.03 9.65 30.92 0.30 -10.73 15 8 H 0.10 2.85 6.86 -52.48 -0.36 2.49 15 9 O -0.21 -5.69 9.75 -20.68 -0.20 -5.90 15 10 C 0.40 9.51 7.98 36.00 0.29 9.80 15 11 O -0.53 -14.39 15.74 -25.79 -0.41 -14.80 15 12 C 0.08 1.29 5.33 36.00 0.19 1.48 15 13 O -0.28 -4.74 9.67 -39.36 -0.38 -5.12 15 14 C 0.17 2.30 6.69 -39.22 -0.26 2.04 15 15 C -0.20 -2.42 8.82 -39.40 -0.35 -2.76 15 16 C 0.02 0.20 6.32 -39.52 -0.25 -0.05 15 17 Cl -0.05 -0.55 28.95 -51.86 -1.50 -2.05 15 18 C -0.15 -1.49 9.61 -39.49 -0.38 -1.87 15 19 C 0.01 0.16 6.32 -39.53 -0.25 -0.09 15 20 Cl -0.05 -0.50 28.95 -51.86 -1.50 -2.00 15 21 C -0.14 -1.71 9.77 -39.39 -0.38 -2.10 15 22 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.10 1.42 7.67 -51.93 -0.40 1.02 15 24 H 0.10 1.42 7.65 -51.93 -0.40 1.02 15 25 H 0.15 1.65 6.30 -52.49 -0.33 1.32 15 26 H 0.14 1.19 8.06 -52.49 -0.42 0.76 15 27 H 0.15 1.75 8.06 -52.48 -0.42 1.33 15 LS Contribution 286.47 15.07 4.32 4.32 Total: -1.00 -31.63 286.47 -6.60 -38.22 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -1.47 Total: -1.50 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.19 Total: -3.19 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.76 Total: -23.71 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.99 Total: -25.82 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -3.00 Total: -4.05 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.63 -6.60 -38.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745599089.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.951 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds