Wall clock time and date at job start Tue Mar 31 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48507 * 109.46817 * 270.00483 * 3 2 1 5 5 H 1.48505 * 109.46975 * 29.99917 * 3 2 1 6 6 H 1.48493 * 109.47356 * 150.00256 * 3 2 1 7 7 C 1.38757 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99362 * 179.97438 * 7 2 1 9 9 O 1.34914 * 120.00677 * 359.97438 * 7 2 1 10 10 C 1.34308 * 117.00624 * 179.97438 * 9 7 2 11 11 O 1.21214 * 119.99915 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00488 * 180.02562 * 10 9 7 13 13 O 1.42894 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.35905 * 116.99735 * 179.97438 * 13 12 10 15 15 C 1.38717 * 120.04369 * 359.73114 * 14 13 12 16 16 C 1.38262 * 119.95812 * 180.29386 * 15 14 13 17 17 Cl 1.73601 * 119.98006 * 179.97438 * 16 15 14 18 18 C 1.38372 * 120.04106 * 359.97438 * 16 15 14 19 19 C 1.38359 * 120.08371 * 359.97438 * 18 16 15 20 20 Cl 1.73599 * 119.97647 * 179.97438 * 19 18 16 21 21 C 1.38260 * 120.04588 * 0.02562 * 19 18 16 22 22 H 0.96999 * 120.00394 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47294 * 59.99937 * 12 10 9 24 24 H 1.09002 * 109.46898 * 300.00176 * 12 10 9 25 25 H 1.07999 * 120.01876 * 0.24223 * 15 14 13 26 26 H 1.08000 * 119.95684 * 179.97438 * 18 16 15 27 27 H 1.08003 * 120.02482 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4958 2.0464 -1.4002 5 1 1.4459 2.6527 0.7000 6 1 3.5460 1.4401 0.6999 7 6 2.0081 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4966 -0.0016 11 8 3.2756 -3.4332 -0.0020 12 6 1.3810 -4.8393 -0.0023 13 8 2.3651 -5.8753 -0.0028 14 6 1.9121 -7.1566 -0.0029 15 6 0.5485 -7.4111 0.0032 16 6 0.0895 -8.7154 0.0092 17 17 -1.6169 -9.0345 0.0175 18 6 0.9895 -9.7664 0.0087 19 6 2.3500 -9.5146 0.0016 20 17 3.4766 -10.8353 0.0017 21 6 2.8128 -8.2117 -0.0044 22 1 -0.4851 0.8400 0.0004 23 1 0.7578 -4.9292 -0.8920 24 1 0.7585 -4.9304 0.8879 25 1 -0.1542 -6.5910 0.0040 26 1 0.6296 -10.7846 0.0139 27 1 3.8748 -8.0155 -0.0095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745599089.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:27 Heat of formation + Delta-G solvation = -120.173658 kcal Electronic energy + Delta-G solvation = -17408.990144 eV Core-core repulsion = 13990.992910 eV Total energy + Delta-G solvation = -3417.997234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.69418 -40.86766 -39.05281 -37.85485 -37.35610 -36.96648 -34.36562 -32.12498 -31.47092 -29.91255 -27.26952 -24.18656 -23.80671 -22.11381 -20.06460 -19.69698 -18.60364 -17.70186 -17.65697 -17.23420 -16.60736 -16.24065 -16.17830 -16.16102 -15.42710 -14.83131 -14.78823 -14.02187 -13.63072 -13.42357 -13.33787 -13.31593 -12.79395 -12.64228 -12.40230 -12.24237 -12.17548 -12.06048 -12.01586 -11.63617 -11.14051 -10.73503 -9.94713 -9.54073 -8.58499 -6.39010 -0.23138 -0.01774 0.60163 1.09371 1.22469 1.30273 1.45801 1.55655 1.59835 2.21975 2.25927 2.85744 2.92885 3.60951 3.81850 3.84728 3.88575 4.00096 4.01382 4.22338 4.49914 4.80746 4.90986 4.91628 5.11150 5.14416 5.76771 6.01163 6.55139 6.86245 7.62720 8.61375 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.003294 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.000941 B = 8497.510479 C = 9619.358414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.000 4.000 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.423 4.423 8 H 0.083 0.917 9 O -0.232 6.232 10 C 0.395 3.605 11 O -0.570 6.570 12 C 0.089 3.911 13 O -0.306 6.306 14 C 0.147 3.853 15 C -0.199 4.199 16 C 0.014 3.986 17 Cl -0.043 7.043 18 C -0.134 4.134 19 C 0.014 3.986 20 Cl -0.040 7.040 21 C -0.145 4.145 22 H 0.281 0.719 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.159 0.841 26 H 0.167 0.833 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 -19.739 -0.002 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.201 4.201 3 Si 0.837 3.163 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.101 0.899 9 O -0.140 6.140 10 C 0.242 3.758 11 O -0.467 6.467 12 C 0.014 3.986 13 O -0.219 6.219 14 C 0.100 3.900 15 C -0.218 4.218 16 C -0.013 4.013 17 Cl -0.014 7.014 18 C -0.154 4.154 19 C -0.013 4.013 20 Cl -0.010 7.010 21 C -0.164 4.164 22 H 0.091 0.909 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.177 0.823 26 H 0.184 0.816 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.610 -19.640 0.003 19.706 hybrid contribution 0.230 0.688 -0.005 0.726 sum -1.380 -18.952 -0.002 19.002 Atomic orbital electron populations 1.70050 1.07515 1.29644 1.46136 1.26529 0.96945 1.02173 0.94442 0.84610 0.77665 0.74425 0.79579 1.18420 1.18267 1.18904 1.21433 0.92282 0.80632 1.55472 0.89932 1.83835 1.39779 1.13710 1.76660 1.23594 0.86619 0.87886 0.77712 1.90579 1.17139 1.88380 1.50630 1.21877 0.89043 0.80617 1.07112 1.86108 1.35176 1.12231 1.88403 1.18724 0.92050 0.83430 0.95755 1.21422 0.94601 0.97924 1.07900 1.20442 0.86185 0.93216 1.01438 1.98404 1.10698 1.95740 1.96583 1.21000 0.89870 1.00553 1.03935 1.20302 0.90612 0.88440 1.01926 1.98398 1.60590 1.45426 1.96625 1.20424 1.01149 0.88983 1.05894 0.90948 0.85558 0.85575 0.82319 0.81560 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.10 13.67 21.63 0.30 -50.81 15 2 C 0.00 0.01 5.49 84.88 0.47 0.48 15 3 Si 1.02 42.27 29.55 68.60 2.03 44.30 15 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 15 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 15 7 C -0.42 -25.05 9.65 67.94 0.66 -24.39 15 8 H 0.08 5.00 6.86 -2.91 -0.02 4.98 15 9 O -0.23 -13.08 9.75 14.97 0.15 -12.94 15 10 C 0.40 19.35 7.98 71.24 0.57 19.92 15 11 O -0.57 -31.79 15.74 27.20 0.43 -31.36 15 12 C 0.09 3.00 5.33 71.24 0.38 3.38 15 13 O -0.31 -10.36 9.67 -73.44 -0.71 -11.07 15 14 C 0.15 3.88 6.69 22.50 0.15 4.03 15 15 C -0.20 -4.43 8.82 22.39 0.20 -4.23 15 16 C 0.01 0.28 6.32 22.31 0.14 0.42 15 17 Cl -0.04 -0.77 28.95 -2.72 -0.08 -0.85 15 18 C -0.13 -2.38 9.61 22.33 0.21 -2.16 15 19 C 0.01 0.28 6.32 22.30 0.14 0.43 15 20 Cl -0.04 -0.69 28.95 -2.72 -0.08 -0.76 15 21 C -0.15 -3.42 9.77 22.39 0.22 -3.20 15 22 H 0.28 14.48 8.31 -92.71 -0.77 13.71 15 23 H 0.13 3.51 7.67 -2.39 -0.02 3.49 15 24 H 0.13 3.51 7.65 -2.39 -0.02 3.49 15 25 H 0.16 3.16 6.30 -2.91 -0.02 3.14 15 26 H 0.17 2.18 8.06 -2.91 -0.02 2.16 15 27 H 0.15 3.45 8.06 -2.91 -0.02 3.43 15 Total: -1.00 -69.62 286.47 6.39 -63.23 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.23 Total: 5.60 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 3.13 Total: -5.34 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.30 Total: -50.81 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -0.14 Total: -55.37 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.16 Total: -1.61 kcal Total: -69.62 6.39 -63.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745599089.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.942 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds