Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47452 * 239.99782 * 3 2 1 5 5 H 1.48503 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47258 * 119.99567 * 3 2 1 7 7 C 1.38751 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99859 * 180.02562 * 7 2 1 9 9 O 1.34919 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.34310 * 116.99721 * 179.97438 * 9 7 2 11 11 O 1.21207 * 120.00526 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99368 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.47345 * 55.00119 * 12 10 9 14 14 O 1.42903 * 109.46442 * 175.00049 * 12 10 9 15 15 C 1.50696 * 109.47163 * 294.99668 * 12 10 9 16 16 C 1.38216 * 119.98744 * 279.72718 * 15 12 10 17 17 C 1.38372 * 120.01126 * 179.72728 * 16 15 12 18 18 Cl 1.73593 * 120.00543 * 180.27503 * 17 16 15 19 19 C 1.38329 * 119.98181 * 0.52576 * 17 16 15 20 20 C 1.38331 * 119.97940 * 359.75059 * 19 17 16 21 21 Cl 1.73595 * 120.00947 * 180.02562 * 20 19 17 22 22 C 1.38217 * 119.98431 * 100.00605 * 15 12 10 23 23 H 0.97000 * 119.99615 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00311 * 60.00230 * 14 12 10 25 25 H 1.08001 * 119.99978 * 0.02562 * 16 15 12 26 26 H 1.08009 * 120.00847 * 179.76924 * 19 17 16 27 27 H 1.07998 * 119.99764 * 359.97438 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6965 -1.2124 5 1 1.2834 2.7465 0.0006 6 1 3.1022 1.6965 1.2126 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4964 0.0005 11 8 3.2757 -3.4330 0.0010 12 6 1.3810 -4.8392 0.0011 13 1 0.6906 -4.8956 -0.8404 14 8 2.3607 -5.8729 -0.1164 15 6 0.6185 -5.0139 1.2891 16 6 1.2832 -5.3965 2.4390 17 6 0.5845 -5.5516 3.6232 18 17 1.4206 -6.0252 5.0689 19 6 -0.7813 -5.3341 3.6536 20 6 -1.4469 -4.9567 2.5012 21 17 -3.1607 -4.6830 2.5385 22 6 -0.7462 -4.7970 1.3188 23 1 -0.4849 0.8401 -0.0004 24 1 3.0097 -5.8831 0.6003 25 1 2.3489 -5.5699 2.4144 26 1 -1.3277 -5.4587 4.5769 27 1 -1.2657 -4.5020 0.4191 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756754789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -119.480912 kcal Electronic energy + Delta-G solvation = -18263.125882 eV Core-core repulsion = 14845.158688 eV Total energy + Delta-G solvation = -3417.967194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11557 -38.86054 -36.94778 -36.77383 -36.07026 -34.89397 -32.31761 -31.64157 -30.64462 -27.48012 -25.14318 -22.85923 -22.31764 -20.43122 -17.99965 -17.85245 -17.31279 -16.21991 -16.00761 -15.46870 -14.83851 -14.59579 -14.41616 -14.34493 -13.86869 -13.51652 -12.83390 -12.35545 -12.30168 -12.08602 -11.75822 -11.67196 -11.28834 -11.20811 -11.04595 -10.97689 -10.64075 -10.52134 -10.46670 -9.93857 -9.31860 -8.73940 -8.69447 -8.66259 -6.50721 -4.18599 0.96642 0.99444 1.77015 2.24273 3.00658 3.13528 3.17417 3.26954 3.41843 3.80170 4.28741 4.49024 4.59084 4.86240 4.96449 5.03452 5.10258 5.21328 5.40236 5.64785 5.94500 6.03232 6.24917 6.44785 6.51505 7.28597 7.57753 7.83131 8.53975 8.97226 9.67949 10.65904 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.005671 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.376398 B = 4936.503252 C = 5612.994300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.384 4.384 8 H 0.096 0.904 9 O -0.202 6.202 10 C 0.365 3.635 11 O -0.545 6.545 12 C 0.171 3.829 13 H 0.139 0.861 14 O -0.529 6.529 15 C -0.079 4.079 16 C -0.093 4.093 17 C -0.022 4.022 18 Cl -0.062 7.062 19 C -0.103 4.103 20 C -0.019 4.019 21 Cl -0.058 7.058 22 C -0.073 4.073 23 H 0.272 0.728 24 H 0.381 0.619 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 -10.713 6.650 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.159 4.159 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.460 4.460 8 H 0.114 0.886 9 O -0.108 6.108 10 C 0.210 3.790 11 O -0.443 6.443 12 C 0.109 3.891 13 H 0.156 0.844 14 O -0.335 6.335 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.049 4.049 18 Cl -0.033 7.033 19 C -0.122 4.122 20 C -0.046 4.046 21 Cl -0.029 7.029 22 C -0.092 4.092 23 H 0.082 0.918 24 H 0.230 0.770 25 H 0.156 0.844 26 H 0.161 0.839 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.150 -10.670 6.250 13.044 hybrid contribution 0.625 1.053 0.700 1.410 sum -3.526 -9.617 6.950 12.378 Atomic orbital electron populations 1.69974 1.05971 1.28038 1.45370 1.25341 0.95835 0.98870 0.95879 0.85745 0.78715 0.79320 0.79455 1.19362 1.20255 1.19406 1.21196 0.92417 0.79658 1.52761 0.88645 1.83859 1.39268 1.13269 1.74408 1.23652 0.87204 0.87709 0.80401 1.90585 1.15228 1.87445 1.51038 1.20061 0.89059 0.84377 0.95556 0.84391 1.86608 1.43476 1.50271 1.53116 1.20123 0.93729 0.98742 0.95444 1.20848 1.00706 0.99154 0.90520 1.20536 0.92152 1.03834 0.88345 1.98372 1.77982 1.90337 1.36598 1.20844 0.92474 1.00628 0.98280 1.20618 0.85822 1.03469 0.94714 1.98379 1.10912 1.94807 1.98752 1.21013 0.93157 0.97031 0.97955 0.91836 0.76968 0.84388 0.83910 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.24 13.67 55.48 0.76 -23.48 15 2 C 0.05 1.26 5.49 -17.53 -0.10 1.16 15 3 Si 0.94 20.85 29.55 -169.99 -5.02 15.82 15 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.38 -11.03 9.64 30.92 0.30 -10.73 15 8 H 0.10 2.77 6.86 -52.48 -0.36 2.41 15 9 O -0.20 -5.50 9.74 -20.70 -0.20 -5.70 15 10 C 0.36 8.57 7.20 36.01 0.26 8.83 15 11 O -0.55 -14.07 15.56 -25.77 -0.40 -14.47 15 12 C 0.17 2.99 3.73 -29.03 -0.11 2.88 15 13 H 0.14 2.17 8.00 -51.93 -0.42 1.75 15 14 O -0.53 -8.58 12.84 -55.10 -0.71 -9.29 15 15 C -0.08 -1.27 4.95 -104.64 -0.52 -1.78 15 16 C -0.09 -1.37 9.10 -39.54 -0.36 -1.73 15 17 C -0.02 -0.30 6.32 -39.50 -0.25 -0.55 15 18 Cl -0.06 -0.75 28.96 -51.86 -1.50 -2.25 15 19 C -0.10 -1.36 9.61 -39.51 -0.38 -1.74 15 20 C -0.02 -0.27 6.32 -39.50 -0.25 -0.52 15 21 Cl -0.06 -0.75 28.96 -51.86 -1.50 -2.25 15 22 C -0.07 -1.12 9.45 -39.54 -0.37 -1.49 15 23 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 24 H 0.38 5.29 7.24 45.56 0.33 5.62 15 25 H 0.14 1.83 6.77 -52.49 -0.36 1.47 15 26 H 0.14 1.58 8.06 -52.48 -0.42 1.16 15 27 H 0.15 2.14 8.04 -52.49 -0.42 1.71 15 LS Contribution 285.69 15.07 4.31 4.31 Total: -1.00 -31.61 285.69 -6.83 -38.44 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -0.78 Total: 4.54 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.78 Total: -5.67 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.76 Total: -23.48 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.31 Total: -29.46 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -3.00 Total: -4.51 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.61 -6.83 -38.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756754789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.038 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds