Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47452 * 239.99782 * 3 2 1 5 5 H 1.48503 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47258 * 119.99567 * 3 2 1 7 7 C 1.38751 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99859 * 180.02562 * 7 2 1 9 9 O 1.34919 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.34310 * 116.99721 * 179.97438 * 9 7 2 11 11 O 1.21207 * 120.00526 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99368 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.47345 * 55.00119 * 12 10 9 14 14 O 1.42903 * 109.46442 * 175.00049 * 12 10 9 15 15 C 1.50696 * 109.47163 * 294.99668 * 12 10 9 16 16 C 1.38216 * 119.98744 * 279.72718 * 15 12 10 17 17 C 1.38372 * 120.01126 * 179.72728 * 16 15 12 18 18 Cl 1.73593 * 120.00543 * 180.27503 * 17 16 15 19 19 C 1.38329 * 119.98181 * 0.52576 * 17 16 15 20 20 C 1.38331 * 119.97940 * 359.75059 * 19 17 16 21 21 Cl 1.73595 * 120.00947 * 180.02562 * 20 19 17 22 22 C 1.38217 * 119.98431 * 100.00605 * 15 12 10 23 23 H 0.97000 * 119.99615 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00311 * 60.00230 * 14 12 10 25 25 H 1.08001 * 119.99978 * 0.02562 * 16 15 12 26 26 H 1.08009 * 120.00847 * 179.76924 * 19 17 16 27 27 H 1.07998 * 119.99764 * 359.97438 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6965 -1.2124 5 1 1.2834 2.7465 0.0006 6 1 3.1022 1.6965 1.2126 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4964 0.0005 11 8 3.2757 -3.4330 0.0010 12 6 1.3810 -4.8392 0.0011 13 1 0.6906 -4.8956 -0.8404 14 8 2.3607 -5.8729 -0.1164 15 6 0.6185 -5.0139 1.2891 16 6 1.2832 -5.3965 2.4390 17 6 0.5845 -5.5516 3.6232 18 17 1.4206 -6.0252 5.0689 19 6 -0.7813 -5.3341 3.6536 20 6 -1.4469 -4.9567 2.5012 21 17 -3.1607 -4.6830 2.5385 22 6 -0.7462 -4.7970 1.3188 23 1 -0.4849 0.8401 -0.0004 24 1 3.0097 -5.8831 0.6003 25 1 2.3489 -5.5699 2.4144 26 1 -1.3277 -5.4587 4.5769 27 1 -1.2657 -4.5020 0.4191 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756754789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -138.922149 kcal Electronic energy + Delta-G solvation = -18263.968917 eV Core-core repulsion = 14845.158688 eV Total energy + Delta-G solvation = -3418.810229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.62036 -40.41518 -38.38766 -37.82149 -37.31647 -36.69040 -34.35087 -32.89956 -31.77090 -29.01582 -27.07075 -23.99386 -23.69347 -22.08146 -19.94030 -19.25502 -19.01237 -17.57665 -17.32068 -16.93566 -16.44545 -16.30184 -16.03404 -15.55390 -15.10167 -14.88828 -14.59850 -13.78090 -13.51058 -13.39393 -13.30003 -13.07520 -12.84981 -12.51685 -12.41110 -12.25700 -12.18128 -12.03859 -12.01224 -11.84159 -10.99029 -10.71068 -9.99579 -9.84334 -8.55564 -6.35107 -0.18643 -0.14234 0.69182 1.15896 1.23155 1.33932 1.48716 1.55440 2.01635 2.22538 2.60516 2.94244 3.21686 3.24866 3.77741 3.84118 3.90283 4.02321 4.26460 4.38663 4.58756 4.82480 4.92693 5.08422 5.13563 5.31738 5.78891 6.32281 6.56672 6.88955 7.66744 8.63046 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.005671 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.376398 B = 4936.503252 C = 5612.994300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.004 3.996 3 Si 1.011 2.989 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.081 0.919 9 O -0.227 6.227 10 C 0.367 3.633 11 O -0.572 6.572 12 C 0.186 3.814 13 H 0.157 0.843 14 O -0.526 6.526 15 C -0.095 4.095 16 C -0.099 4.099 17 C -0.026 4.026 18 Cl -0.046 7.046 19 C -0.094 4.094 20 C -0.026 4.026 21 Cl -0.047 7.047 22 C -0.083 4.083 23 H 0.279 0.721 24 H 0.391 0.609 25 H 0.148 0.852 26 H 0.167 0.833 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -10.783 7.524 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.198 4.198 3 Si 0.830 3.170 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.099 0.901 9 O -0.134 6.134 10 C 0.214 3.786 11 O -0.470 6.470 12 C 0.125 3.875 13 H 0.174 0.826 14 O -0.333 6.333 15 C -0.096 4.096 16 C -0.118 4.118 17 C -0.053 4.053 18 Cl -0.016 7.016 19 C -0.114 4.114 20 C -0.053 4.053 21 Cl -0.018 7.018 22 C -0.101 4.101 23 H 0.089 0.911 24 H 0.242 0.758 25 H 0.166 0.834 26 H 0.184 0.816 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.365 -10.772 7.129 13.635 hybrid contribution 0.699 0.927 0.488 1.259 sum -3.666 -9.845 7.617 12.977 Atomic orbital electron populations 1.70048 1.07405 1.29480 1.45842 1.26420 0.96833 1.02016 0.94546 0.84781 0.77756 0.74753 0.79746 1.18649 1.18390 1.18761 1.21350 0.92143 0.81077 1.55239 0.90137 1.83883 1.39973 1.13901 1.75635 1.24954 0.87185 0.88844 0.77657 1.90550 1.16710 1.88166 1.51622 1.20031 0.89056 0.80963 0.97480 0.82591 1.86600 1.43706 1.49157 1.53871 1.19946 0.93997 1.00674 0.95008 1.21022 1.01342 0.98843 0.90581 1.20612 0.92477 1.03534 0.88666 1.98379 1.77706 1.90118 1.35442 1.21132 0.92414 0.98997 0.98816 1.20694 0.86443 1.03509 0.94680 1.98382 1.09981 1.94749 1.98726 1.21128 0.93153 0.97127 0.98726 0.91119 0.75771 0.83416 0.81575 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.67 13.67 21.62 0.30 -50.37 15 2 C 0.00 0.20 5.49 84.87 0.47 0.67 15 3 Si 1.01 42.34 29.55 68.60 2.03 44.37 15 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 15 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 7 C -0.42 -24.80 9.64 67.94 0.66 -24.14 15 8 H 0.08 4.82 6.86 -2.91 -0.02 4.80 15 9 O -0.23 -12.64 9.74 14.89 0.14 -12.50 15 10 C 0.37 17.47 7.20 71.24 0.51 17.98 15 11 O -0.57 -30.00 15.56 27.21 0.42 -29.58 15 12 C 0.19 6.44 3.73 29.10 0.11 6.55 15 13 H 0.16 4.81 8.00 -2.39 -0.02 4.79 15 14 O -0.53 -16.55 12.84 -129.98 -1.67 -18.22 15 15 C -0.10 -2.98 4.95 -19.88 -0.10 -3.08 15 16 C -0.10 -2.81 9.10 22.30 0.20 -2.60 15 17 C -0.03 -0.67 6.32 22.32 0.14 -0.52 15 18 Cl -0.05 -1.01 28.96 -2.72 -0.08 -1.09 15 19 C -0.09 -2.31 9.61 22.31 0.21 -2.10 15 20 C -0.03 -0.71 6.32 22.32 0.14 -0.57 15 21 Cl -0.05 -1.17 28.96 -2.72 -0.08 -1.25 15 22 C -0.08 -2.48 9.45 22.29 0.21 -2.26 15 23 H 0.28 14.50 8.31 -92.71 -0.77 13.73 15 24 H 0.39 10.49 7.24 -74.06 -0.54 9.96 15 25 H 0.15 3.76 6.77 -2.91 -0.02 3.74 15 26 H 0.17 3.21 8.06 -2.91 -0.02 3.19 15 27 H 0.15 4.30 8.04 -2.91 -0.02 4.28 15 Total: -1.00 -67.80 285.69 4.33 -63.47 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.71 Total: 15.25 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 2.56 Total: -10.08 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.30 Total: -50.37 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -1.10 Total: -60.30 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.16 Total: -2.35 kcal Total: -67.80 4.33 -63.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756754789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.453 kcal (2) G-P(sol) polarization free energy of solvation -67.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds