Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46937 * 2 1 4 4 H 1.09000 * 109.47192 * 305.00290 * 3 2 1 5 5 C 1.53001 * 109.46787 * 185.00381 * 3 2 1 6 6 N 1.46897 * 109.47663 * 65.00380 * 5 3 2 7 7 C 1.46892 * 111.00238 * 189.99988 * 6 5 3 8 8 C 1.50696 * 109.47324 * 155.65731 * 7 6 5 9 9 H 1.08006 * 120.00269 * 2.97556 * 8 7 6 10 10 C 1.37873 * 120.00538 * 182.97398 * 8 7 6 11 11 N 1.31518 * 119.99797 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00491 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46889 * 90.00407 * 12 10 8 14 14 H 1.48498 * 109.47315 * 209.99937 * 12 10 8 15 15 H 1.48493 * 109.47014 * 330.00269 * 12 10 8 16 16 C 1.46899 * 110.99858 * 66.04037 * 6 5 3 17 17 C 1.53012 * 109.46939 * 197.35507 * 16 6 5 18 18 C 1.53000 * 109.46971 * 60.97678 * 17 16 6 19 19 C 1.53002 * 109.46958 * 180.97665 * 17 16 6 20 20 C 1.50703 * 109.46838 * 65.00426 * 3 2 1 21 21 C 1.38230 * 119.99862 * 59.72655 * 20 3 2 22 22 C 1.38236 * 119.99412 * 179.78587 * 21 20 3 23 23 C 1.38237 * 120.00402 * 0.44019 * 22 21 20 24 24 C 1.38242 * 119.99682 * 359.81329 * 23 22 21 25 25 C 1.38232 * 119.99421 * 239.99629 * 20 3 2 26 26 H 1.09007 * 109.47035 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47451 * 59.99858 * 1 2 3 28 28 H 1.08995 * 109.46708 * 299.99460 * 1 2 3 29 29 H 1.08996 * 109.47129 * 120.00423 * 2 1 3 30 30 H 1.09004 * 109.46912 * 240.00411 * 2 1 3 31 31 H 1.09002 * 109.46870 * 185.00163 * 5 3 2 32 32 H 1.09004 * 109.47127 * 304.99869 * 5 3 2 33 33 H 1.09000 * 109.47072 * 275.65857 * 7 6 5 34 34 H 1.08996 * 109.47618 * 35.65641 * 7 6 5 35 35 H 0.96995 * 120.00265 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.47502 * 317.35064 * 16 6 5 37 37 H 1.08997 * 109.47247 * 77.36012 * 16 6 5 38 38 H 1.08996 * 109.46902 * 300.97640 * 17 16 6 39 39 H 1.08999 * 109.46754 * 179.97438 * 18 17 16 40 40 H 1.09002 * 109.47024 * 300.00004 * 18 17 16 41 41 H 1.09004 * 109.47181 * 60.00036 * 18 17 16 42 42 H 1.08999 * 109.46806 * 59.99706 * 19 17 16 43 43 H 1.08999 * 109.46736 * 180.02562 * 19 17 16 44 44 H 1.09004 * 109.47215 * 299.99976 * 19 17 16 45 45 H 1.07997 * 120.00255 * 359.97438 * 21 20 3 46 46 H 1.08002 * 120.00309 * 180.27564 * 22 21 20 47 47 H 1.07996 * 120.00122 * 179.83501 * 23 22 21 48 48 H 1.07994 * 119.99720 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.00375 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 3.9490 0.8964 -1.4335 7 6 5.3974 0.6612 -1.5008 8 6 5.6867 -0.3999 -2.5310 9 1 4.8808 -0.8199 -3.1147 10 6 6.9801 -0.8348 -2.7285 11 7 7.9615 -0.3231 -2.0181 12 14 7.3386 -2.1506 -4.0050 13 1 7.6190 -1.5073 -5.3137 14 1 8.5200 -2.9437 -3.5801 15 1 6.1618 -3.0468 -4.1359 16 6 3.5073 1.7767 -2.5234 17 6 3.5252 1.0027 -3.8432 18 6 2.5636 -0.1838 -3.7516 19 6 3.0885 1.9264 -4.9821 20 6 1.6413 2.1162 1.2878 21 6 2.0722 1.6047 2.4975 22 6 1.7101 2.2252 3.6785 23 6 0.9097 3.3520 3.6502 24 6 0.4746 3.8604 2.4406 25 6 0.8402 3.2423 1.2594 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 0.5137 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.9355 2.4655 -0.0367 32 1 3.9954 0.8311 0.6658 33 1 5.9030 1.5857 -1.7797 34 1 5.7574 0.3298 -0.5269 35 1 8.8715 -0.6287 -2.1572 36 1 2.4949 2.1260 -2.3208 37 1 4.1793 2.6319 -2.5948 38 1 4.5340 0.6386 -4.0372 39 1 2.5760 -0.7349 -4.6919 40 1 2.8747 -0.8419 -2.9402 41 1 1.5546 0.1803 -3.5575 42 1 3.7735 2.7717 -5.0472 43 1 3.1008 1.3748 -5.9222 44 1 2.0795 2.2905 -4.7880 45 1 2.6942 0.7221 2.5199 46 1 2.0504 1.8283 4.6235 47 1 0.6247 3.8352 4.5730 48 1 -0.1504 4.7409 2.4184 49 1 0.5004 3.6396 0.3143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768153469.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = 4.007690 kcal Electronic energy + Delta-G solvation = -24115.339654 eV Core-core repulsion = 21041.335147 eV Total energy + Delta-G solvation = -3074.004507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.59911 -37.68110 -35.23461 -33.36880 -32.30743 -30.84206 -30.56209 -28.32897 -26.71717 -26.43568 -24.91657 -22.80062 -22.70341 -22.15498 -20.76000 -19.60113 -18.79564 -16.83394 -16.33303 -15.52470 -15.03731 -14.71719 -14.57766 -14.20655 -14.10832 -13.80147 -13.42441 -13.25677 -13.14011 -12.70723 -12.50980 -12.41178 -12.21554 -12.12978 -11.70953 -11.40998 -11.32867 -11.15595 -11.06516 -10.95084 -10.77574 -10.69195 -10.43691 -10.32341 -10.18902 -10.11807 -10.02054 -9.82133 -9.29734 -9.02327 -8.84232 -8.53150 -8.34814 -7.16759 -5.97667 -3.96373 1.46308 1.47796 3.33376 3.40374 3.43944 3.87814 4.44566 4.76570 4.88998 5.02845 5.12481 5.21795 5.26615 5.36658 5.47386 5.51902 5.60572 5.62871 5.65532 5.71782 5.79114 5.90968 6.00923 6.05521 6.07810 6.10998 6.17055 6.27221 6.28315 6.35402 6.37350 6.41755 6.45059 6.51765 6.54618 6.57053 6.60347 6.71311 6.79632 6.84665 6.91762 7.10137 7.21932 7.27726 7.36768 7.44703 7.91602 8.18067 8.28908 8.60486 9.10840 9.65747 11.12818 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.004407 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.965221 B = 6352.611353 C = 7001.336039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.047 4.047 4 H 0.076 0.924 5 C 0.066 3.934 6 N -0.529 5.529 7 C 0.193 3.807 8 C -0.500 4.500 9 H 0.078 0.922 10 C 0.053 3.947 11 N -0.900 5.900 12 Si 0.890 3.110 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.272 1.272 16 C 0.073 3.927 17 C -0.107 4.107 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.059 4.059 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.019 0.981 32 H 0.069 0.931 33 H -0.010 1.010 34 H 0.026 0.974 35 H 0.259 0.741 36 H 0.051 0.949 37 H 0.019 0.981 38 H 0.111 0.889 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.123 0.877 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 5.618 5.855 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.066 4.066 4 H 0.094 0.906 5 C -0.062 4.062 6 N -0.253 5.253 7 C 0.068 3.932 8 C -0.539 4.539 9 H 0.096 0.904 10 C -0.148 4.148 11 N -0.540 5.540 12 Si 0.718 3.282 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.197 1.197 16 C -0.055 4.055 17 C -0.125 4.125 18 C -0.186 4.186 19 C -0.202 4.202 20 C -0.060 4.060 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.008 0.992 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.129 0.871 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.141 0.859 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.770 5.142 5.828 16.690 hybrid contribution 0.796 0.254 -0.466 0.957 sum -13.974 5.396 5.362 15.911 Atomic orbital electron populations 1.21787 0.96944 1.00858 1.01057 1.21497 0.94316 0.95264 1.03430 1.20335 0.96488 0.96419 0.93342 0.90602 1.22052 0.93002 0.97411 0.93777 1.62082 1.19147 1.44339 0.99711 1.19777 0.80161 0.95649 0.97653 1.21425 0.92768 1.20313 1.19368 0.90425 1.25006 0.96472 0.96834 0.96463 1.69964 0.99937 1.43411 1.40725 0.86616 0.77886 0.81995 0.81683 1.20843 1.21452 1.19711 1.22013 0.97877 0.93456 0.92157 1.21438 1.03057 0.95163 0.92851 1.21668 0.97386 0.98447 1.01099 1.21840 0.99965 0.99561 0.98798 1.20013 0.95836 0.94783 0.95331 1.21083 0.99945 1.00166 0.91925 1.21129 0.98408 0.96151 0.98091 1.21060 0.99301 0.97154 0.97662 1.21079 1.00376 0.99837 0.92696 1.21073 0.98806 0.95978 0.98028 0.93304 0.93245 0.93416 0.92524 0.89385 0.96278 0.91258 0.99201 0.95621 0.93119 0.93065 0.96301 0.87133 0.94745 0.90611 0.94781 0.93521 0.93356 0.94007 0.85924 0.86422 0.86653 0.86573 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.73 37.16 0.36 -1.47 16 2 C -0.11 -1.53 5.24 -26.73 -0.14 -1.67 16 3 C -0.05 -0.68 1.98 -91.77 -0.18 -0.86 16 4 H 0.08 1.10 5.83 -51.93 -0.30 0.80 16 5 C 0.07 1.16 4.05 -3.83 -0.02 1.15 16 6 N -0.53 -10.59 3.08 -236.08 -0.73 -11.32 16 7 C 0.19 4.81 4.78 -4.98 -0.02 4.79 16 8 C -0.50 -13.24 7.24 -34.44 -0.25 -13.49 16 9 H 0.08 1.99 4.58 -52.48 -0.24 1.75 16 10 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 11 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 12 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.07 1.36 4.27 -3.82 -0.02 1.34 16 17 C -0.11 -1.95 2.40 -90.61 -0.22 -2.17 16 18 C -0.13 -2.21 8.40 37.16 0.31 -1.90 16 19 C -0.14 -2.22 9.19 37.16 0.34 -1.88 16 20 C -0.06 -0.79 3.76 -104.63 -0.39 -1.19 16 21 C -0.11 -1.48 8.71 -39.59 -0.34 -1.82 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.49 9.67 -39.58 -0.38 -1.87 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 29 H 0.06 0.81 7.21 -51.93 -0.37 0.43 16 30 H 0.09 1.42 7.23 -51.93 -0.38 1.04 16 31 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 1.26 7.24 -51.93 -0.38 0.88 16 33 H -0.01 -0.27 7.67 -51.93 -0.40 -0.67 16 34 H 0.03 0.70 7.65 -51.93 -0.40 0.30 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.05 0.85 5.85 -51.93 -0.30 0.54 16 37 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 38 H 0.11 2.43 5.14 -51.93 -0.27 2.17 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.45 6.34 -51.93 -0.33 1.13 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.12 1.58 7.13 -52.49 -0.37 1.20 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.12 1.31 7.95 -52.49 -0.42 0.89 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -27.97 374.77 -10.33 -38.30 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.72 Total: 1.83 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -2.24 Total: -25.08 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.01 Total: -36.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.97 -10.33 -38.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153469.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.306 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds