Wall clock time and date at job start Tue Mar 31 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46937 * 2 1 4 4 H 1.09000 * 109.47192 * 305.00290 * 3 2 1 5 5 C 1.53001 * 109.46787 * 185.00381 * 3 2 1 6 6 N 1.46897 * 109.47663 * 65.00380 * 5 3 2 7 7 C 1.46892 * 111.00238 * 189.99988 * 6 5 3 8 8 C 1.50696 * 109.47324 * 155.65731 * 7 6 5 9 9 H 1.08006 * 120.00269 * 2.97556 * 8 7 6 10 10 C 1.37873 * 120.00538 * 182.97398 * 8 7 6 11 11 N 1.31518 * 119.99797 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00491 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46889 * 90.00407 * 12 10 8 14 14 H 1.48498 * 109.47315 * 209.99937 * 12 10 8 15 15 H 1.48493 * 109.47014 * 330.00269 * 12 10 8 16 16 C 1.46899 * 110.99858 * 66.04037 * 6 5 3 17 17 C 1.53012 * 109.46939 * 197.35507 * 16 6 5 18 18 C 1.53000 * 109.46971 * 60.97678 * 17 16 6 19 19 C 1.53002 * 109.46958 * 180.97665 * 17 16 6 20 20 C 1.50703 * 109.46838 * 65.00426 * 3 2 1 21 21 C 1.38230 * 119.99862 * 59.72655 * 20 3 2 22 22 C 1.38236 * 119.99412 * 179.78587 * 21 20 3 23 23 C 1.38237 * 120.00402 * 0.44019 * 22 21 20 24 24 C 1.38242 * 119.99682 * 359.81329 * 23 22 21 25 25 C 1.38232 * 119.99421 * 239.99629 * 20 3 2 26 26 H 1.09007 * 109.47035 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47451 * 59.99858 * 1 2 3 28 28 H 1.08995 * 109.46708 * 299.99460 * 1 2 3 29 29 H 1.08996 * 109.47129 * 120.00423 * 2 1 3 30 30 H 1.09004 * 109.46912 * 240.00411 * 2 1 3 31 31 H 1.09002 * 109.46870 * 185.00163 * 5 3 2 32 32 H 1.09004 * 109.47127 * 304.99869 * 5 3 2 33 33 H 1.09000 * 109.47072 * 275.65857 * 7 6 5 34 34 H 1.08996 * 109.47618 * 35.65641 * 7 6 5 35 35 H 0.96995 * 120.00265 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.47502 * 317.35064 * 16 6 5 37 37 H 1.08997 * 109.47247 * 77.36012 * 16 6 5 38 38 H 1.08996 * 109.46902 * 300.97640 * 17 16 6 39 39 H 1.08999 * 109.46754 * 179.97438 * 18 17 16 40 40 H 1.09002 * 109.47024 * 300.00004 * 18 17 16 41 41 H 1.09004 * 109.47181 * 60.00036 * 18 17 16 42 42 H 1.08999 * 109.46806 * 59.99706 * 19 17 16 43 43 H 1.08999 * 109.46736 * 180.02562 * 19 17 16 44 44 H 1.09004 * 109.47215 * 299.99976 * 19 17 16 45 45 H 1.07997 * 120.00255 * 359.97438 * 21 20 3 46 46 H 1.08002 * 120.00309 * 180.27564 * 22 21 20 47 47 H 1.07996 * 120.00122 * 179.83501 * 23 22 21 48 48 H 1.07994 * 119.99720 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.00375 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 3.9490 0.8964 -1.4335 7 6 5.3974 0.6612 -1.5008 8 6 5.6867 -0.3999 -2.5310 9 1 4.8808 -0.8199 -3.1147 10 6 6.9801 -0.8348 -2.7285 11 7 7.9615 -0.3231 -2.0181 12 14 7.3386 -2.1506 -4.0050 13 1 7.6190 -1.5073 -5.3137 14 1 8.5200 -2.9437 -3.5801 15 1 6.1618 -3.0468 -4.1359 16 6 3.5073 1.7767 -2.5234 17 6 3.5252 1.0027 -3.8432 18 6 2.5636 -0.1838 -3.7516 19 6 3.0885 1.9264 -4.9821 20 6 1.6413 2.1162 1.2878 21 6 2.0722 1.6047 2.4975 22 6 1.7101 2.2252 3.6785 23 6 0.9097 3.3520 3.6502 24 6 0.4746 3.8604 2.4406 25 6 0.8402 3.2423 1.2594 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 0.5137 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.9355 2.4655 -0.0367 32 1 3.9954 0.8311 0.6658 33 1 5.9030 1.5857 -1.7797 34 1 5.7574 0.3298 -0.5269 35 1 8.8715 -0.6287 -2.1572 36 1 2.4949 2.1260 -2.3208 37 1 4.1793 2.6319 -2.5948 38 1 4.5340 0.6386 -4.0372 39 1 2.5760 -0.7349 -4.6919 40 1 2.8747 -0.8419 -2.9402 41 1 1.5546 0.1803 -3.5575 42 1 3.7735 2.7717 -5.0472 43 1 3.1008 1.3748 -5.9222 44 1 2.0795 2.2905 -4.7880 45 1 2.6942 0.7221 2.5199 46 1 2.0504 1.8283 4.6235 47 1 0.6247 3.8352 4.5730 48 1 -0.1504 4.7409 2.4184 49 1 0.5004 3.6396 0.3143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768153469.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:10 Heat of formation + Delta-G solvation = -7.922502 kcal Electronic energy + Delta-G solvation = -24115.856986 eV Core-core repulsion = 21041.335147 eV Total energy + Delta-G solvation = -3074.521839 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66819 -39.13005 -36.45735 -35.06845 -34.15628 -31.74971 -31.56346 -29.93905 -28.32793 -27.77430 -26.44655 -24.38664 -23.74702 -23.15871 -22.33847 -20.87695 -20.23539 -18.39896 -17.78926 -16.84180 -16.44990 -16.34109 -15.79650 -15.59307 -15.40974 -15.08264 -14.76797 -14.42433 -14.21849 -14.10182 -14.00655 -13.87734 -13.52883 -13.35071 -13.12880 -12.92056 -12.75318 -12.65008 -12.50885 -12.36229 -12.14881 -12.03082 -11.89456 -11.79083 -11.57209 -11.50480 -11.38599 -11.22864 -11.10756 -10.80131 -10.47548 -9.75334 -9.51532 -8.91186 -8.11197 -6.16476 0.52946 0.56529 1.42656 1.43406 1.54412 2.44350 2.93959 3.19470 3.32703 3.78110 3.97610 4.16822 4.18186 4.22341 4.27586 4.34308 4.35674 4.44111 4.52983 4.58188 4.67556 4.69996 4.76205 4.78584 4.83337 4.88870 4.97411 5.04874 5.08957 5.13655 5.16792 5.18862 5.20638 5.24602 5.25523 5.33195 5.35803 5.44555 5.48971 5.57705 5.66559 5.68415 5.73714 5.86005 5.86121 5.91430 6.18180 6.19605 6.49722 6.70586 6.98752 7.50031 8.99602 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.004407 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.965221 B = 6352.611353 C = 7001.336039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.031 4.031 4 H 0.081 0.919 5 C 0.069 3.931 6 N -0.523 5.523 7 C 0.209 3.791 8 C -0.499 4.499 9 H 0.087 0.913 10 C -0.003 4.003 11 N -0.942 5.942 12 Si 0.956 3.044 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.261 1.261 16 C 0.075 3.925 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.137 4.137 20 C -0.075 4.075 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.129 4.129 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.008 0.992 32 H 0.054 0.946 33 H -0.044 1.044 34 H -0.006 1.006 35 H 0.259 0.741 36 H 0.080 0.920 37 H 0.001 0.999 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.134 0.866 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.621 6.077 5.437 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C -0.050 4.050 4 H 0.099 0.901 5 C -0.060 4.060 6 N -0.247 5.247 7 C 0.083 3.917 8 C -0.538 4.538 9 H 0.105 0.895 10 C -0.200 4.200 11 N -0.584 5.584 12 Si 0.782 3.218 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.185 1.185 16 C -0.053 4.053 17 C -0.127 4.127 18 C -0.178 4.178 19 C -0.195 4.195 20 C -0.075 4.075 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.073 0.927 33 H -0.027 1.027 34 H 0.013 0.987 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.019 0.981 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.131 0.869 46 H 0.152 0.848 47 H 0.160 0.840 48 H 0.160 0.840 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.678 5.602 5.407 19.316 hybrid contribution 1.660 0.189 -0.243 1.689 sum -16.017 5.791 5.164 17.798 Atomic orbital electron populations 1.21689 0.94900 1.01554 1.01521 1.21426 0.96018 0.94690 1.02074 1.20134 0.93338 0.96966 0.94515 0.90130 1.22079 0.95747 0.96111 0.92018 1.62046 1.15594 1.45507 1.01525 1.19427 0.82976 0.93762 0.95571 1.21761 0.93043 1.19889 1.19073 0.89507 1.25868 0.96426 0.99160 0.98560 1.70110 1.00295 1.45227 1.42723 0.85566 0.77823 0.79309 0.79119 1.20160 1.21491 1.18503 1.22083 0.98731 0.92563 0.91898 1.21357 1.01287 0.96344 0.93677 1.21563 0.98100 0.97489 1.00627 1.21760 1.01062 0.98812 0.97821 1.19906 0.97290 0.95785 0.94556 1.21145 1.00550 1.00450 0.92752 1.21387 0.98412 0.96464 0.98207 1.21432 0.98230 0.96545 0.98872 1.21425 1.00100 1.00348 0.92203 1.21270 0.98585 0.95508 0.99286 0.92527 0.92454 0.93159 0.93245 0.91397 0.97350 0.92740 1.02672 0.98743 0.93228 0.90192 0.98122 0.91239 0.93810 0.93099 0.92425 0.93882 0.92306 0.91656 0.86942 0.84764 0.83992 0.83955 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.73 71.98 0.70 -2.47 16 2 C -0.10 -2.93 5.24 30.60 0.16 -2.77 16 3 C -0.03 -0.88 1.98 -11.54 -0.02 -0.91 16 4 H 0.08 2.21 5.83 -2.39 -0.01 2.20 16 5 C 0.07 2.52 4.05 86.30 0.35 2.87 16 6 N -0.52 -21.77 3.08 -900.82 -2.77 -24.54 16 7 C 0.21 11.08 4.78 85.56 0.41 11.49 16 8 C -0.50 -27.37 7.24 25.60 0.19 -27.18 16 9 H 0.09 4.53 4.58 -2.91 -0.01 4.52 16 10 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 11 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 12 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 16 C 0.08 2.79 4.27 86.31 0.37 3.16 16 17 C -0.11 -3.89 2.40 -10.79 -0.03 -3.92 16 18 C -0.12 -3.95 8.40 71.98 0.60 -3.35 16 19 C -0.14 -3.93 9.19 71.98 0.66 -3.27 16 20 C -0.07 -1.95 3.76 -19.87 -0.07 -2.02 16 21 C -0.13 -3.39 8.71 22.27 0.19 -3.20 16 22 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 23 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 24 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 25 C -0.13 -2.90 9.67 22.27 0.22 -2.68 16 26 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.12 7.38 -2.39 -0.02 1.11 16 29 H 0.05 1.43 7.21 -2.39 -0.02 1.42 16 30 H 0.07 2.18 7.23 -2.38 -0.02 2.17 16 31 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 32 H 0.05 2.13 7.24 -2.39 -0.02 2.11 16 33 H -0.04 -2.61 7.67 -2.39 -0.02 -2.63 16 34 H -0.01 -0.33 7.65 -2.39 -0.02 -0.34 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.08 2.52 5.85 -2.39 -0.01 2.50 16 37 H 0.00 0.02 7.74 -2.39 -0.02 0.00 16 38 H 0.07 3.10 5.14 -2.39 -0.01 3.09 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.92 6.34 -2.39 -0.02 1.91 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.11 3.04 7.13 -2.91 -0.02 3.02 16 46 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 47 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 49 H 0.13 2.53 7.95 -2.91 -0.02 2.51 16 Total: -1.00 -62.80 374.77 5.28 -57.51 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.89 Total: 18.66 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 4.86 Total: -40.98 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.49 Total: -81.62 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -62.80 5.28 -57.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153469.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.590 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds