Wall clock time and date at job start Tue Mar 31 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47320 * 2 1 4 4 C 1.38262 * 119.99931 * 265.01724 * 3 2 1 5 5 C 1.38213 * 119.99908 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99916 * 359.81440 * 5 4 3 7 7 C 1.38216 * 119.99945 * 0.41915 * 6 5 4 8 8 C 1.38213 * 120.00181 * 84.99798 * 3 2 1 9 9 C 1.50695 * 119.99596 * 0.02562 * 8 3 2 10 10 C 1.53003 * 109.47520 * 84.97564 * 9 8 3 11 11 N 1.46901 * 109.46766 * 186.11706 * 10 9 8 12 12 C 1.46903 * 110.99478 * 173.67635 * 11 10 9 13 13 C 1.50698 * 109.47358 * 195.29958 * 12 11 10 14 14 H 1.08007 * 119.99425 * 5.03048 * 13 12 11 15 15 C 1.37873 * 120.00449 * 185.03017 * 13 12 11 16 16 N 1.31516 * 120.00121 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99791 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47126 * 90.00079 * 17 15 13 19 19 H 1.48504 * 109.47373 * 209.99949 * 17 15 13 20 20 H 1.48502 * 109.47275 * 330.00180 * 17 15 13 21 21 C 1.46895 * 111.00422 * 297.62888 * 11 10 9 22 22 C 1.53004 * 109.46869 * 87.99480 * 21 11 10 23 23 C 1.52999 * 109.47241 * 65.83018 * 22 21 11 24 24 C 1.52998 * 109.47116 * 185.82772 * 22 21 11 25 25 H 1.09006 * 109.46880 * 60.00426 * 1 2 3 26 26 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47496 * 300.00302 * 1 2 3 28 28 H 1.09004 * 109.47306 * 239.99731 * 2 1 3 29 29 H 1.09001 * 109.46962 * 120.00039 * 2 1 3 30 30 H 1.08006 * 119.99787 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99923 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.99909 * 180.23396 * 6 5 4 33 33 H 1.07995 * 119.99645 * 179.80790 * 7 6 5 34 34 H 1.09005 * 109.46995 * 204.97515 * 9 8 3 35 35 H 1.08999 * 109.47281 * 324.97407 * 9 8 3 36 36 H 1.08991 * 109.46669 * 306.12092 * 10 9 8 37 37 H 1.09003 * 109.46661 * 66.12365 * 10 9 8 38 38 H 1.09001 * 109.47092 * 315.30322 * 12 11 10 39 39 H 1.09007 * 109.47156 * 75.30006 * 12 11 10 40 40 H 0.97000 * 119.99955 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47359 * 207.99360 * 21 11 10 42 42 H 1.09001 * 109.47493 * 327.99497 * 21 11 10 43 43 H 1.08998 * 109.47243 * 305.82581 * 22 21 11 44 44 H 1.08999 * 109.47248 * 64.95479 * 23 22 21 45 45 H 1.08994 * 109.47258 * 184.96244 * 23 22 21 46 46 H 1.09005 * 109.46807 * 304.96400 * 23 22 21 47 47 H 1.08998 * 109.47039 * 60.00032 * 24 22 21 48 48 H 1.08996 * 109.47400 * 180.02562 * 24 22 21 49 49 H 1.09005 * 109.47295 * 300.00105 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0379 -1.1929 5 6 2.8211 3.3411 -1.1929 6 6 2.9493 4.0290 -0.0005 7 6 2.6255 3.4105 1.1924 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4925 10 6 3.0038 0.6251 2.9946 11 7 2.6104 -0.1462 4.1813 12 6 3.6891 -1.0498 4.6032 13 6 3.1397 -2.0751 5.5613 14 1 2.0800 -2.1085 5.7672 15 6 3.9897 -2.9706 6.1749 16 7 3.5102 -3.8657 7.0106 17 14 5.8226 -2.9123 5.8192 18 1 6.4858 -2.0011 6.7863 19 1 6.3960 -4.2759 5.9507 20 1 6.0433 -2.4137 4.4380 21 6 2.2099 0.7440 5.2790 22 6 0.7181 1.0622 5.1591 23 6 -0.0951 -0.2147 5.3804 24 6 0.3321 2.1017 6.2133 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2570 1.5017 -2.1247 31 1 3.0773 3.8233 -2.1247 32 1 3.3054 5.0486 -0.0009 33 1 2.7287 3.9468 2.1241 34 1 1.5430 2.1905 3.2323 35 1 0.9579 0.7686 2.3355 36 1 3.3355 -0.0567 2.2116 37 1 3.8169 1.3028 3.2549 38 1 4.1033 -1.5537 3.7300 39 1 4.4727 -0.4747 5.0966 40 1 4.1082 -4.4959 7.4420 41 1 2.4012 0.2532 6.2332 42 1 2.7842 1.6689 5.2247 43 1 0.5097 1.4581 4.1652 44 1 0.0450 -0.5619 6.4041 45 1 -1.1512 -0.0073 5.2084 46 1 0.2417 -0.9848 4.6863 47 1 0.9114 3.0115 6.0556 48 1 -0.7307 2.3281 6.1282 49 1 0.5405 1.7059 7.2073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769730077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:48 Heat of formation + Delta-G solvation = 5.660899 kcal Electronic energy + Delta-G solvation = -23967.684293 eV Core-core repulsion = 20893.751475 eV Total energy + Delta-G solvation = -3073.932818 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.79020 -37.75477 -34.42119 -33.94700 -32.99144 -31.97664 -29.56975 -28.69261 -26.99304 -26.55654 -25.16406 -23.79511 -22.62546 -21.37597 -20.46606 -20.12469 -19.33078 -16.75348 -16.35612 -16.02404 -15.37298 -14.74317 -14.54038 -14.37052 -13.83153 -13.63243 -13.51784 -13.44437 -13.22047 -12.98607 -12.84247 -12.33888 -12.25441 -12.14964 -11.97585 -11.71637 -11.64208 -11.32562 -11.21044 -11.09835 -11.01540 -10.75551 -10.67495 -10.49723 -10.37678 -10.28864 -9.89396 -9.80441 -9.62726 -9.23724 -8.76355 -8.55011 -8.47553 -7.33731 -6.02728 -3.99056 1.39333 1.41948 3.28597 3.36867 3.39273 3.77607 4.43852 4.65542 4.79358 4.90045 4.99410 5.09314 5.19971 5.29136 5.31975 5.44160 5.47277 5.50618 5.52937 5.59328 5.63850 5.66287 5.81068 5.91120 5.95191 5.97732 6.03263 6.05927 6.10701 6.15857 6.24656 6.25709 6.36481 6.40302 6.47198 6.49970 6.51796 6.58518 6.59345 6.69224 6.80145 6.86651 6.96360 7.00008 7.08035 7.17989 7.66306 7.96064 8.10398 8.69986 9.09932 9.60195 11.10329 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.004687 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.659147 B = 5972.106515 C = 6664.897269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.074 4.074 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.116 4.116 8 C -0.071 4.071 9 C -0.087 4.087 10 C 0.062 3.938 11 N -0.523 5.523 12 C 0.163 3.837 13 C -0.504 4.504 14 H 0.086 0.914 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.871 3.129 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.269 1.269 21 C 0.064 3.936 22 C -0.101 4.101 23 C -0.134 4.134 24 C -0.146 4.146 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.024 0.976 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.020 0.980 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.048 0.952 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 14.139 -13.159 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.074 4.074 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.135 4.135 8 C -0.072 4.072 9 C -0.124 4.124 10 C -0.067 4.067 11 N -0.246 5.246 12 C 0.037 3.963 13 C -0.543 4.543 14 H 0.104 0.896 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.699 3.301 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.194 1.194 21 C -0.064 4.064 22 C -0.120 4.120 23 C -0.191 4.191 24 C -0.204 4.204 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.001 0.999 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.038 0.962 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.834 13.672 -13.157 19.581 hybrid contribution 1.914 0.541 0.087 1.991 sum -2.919 14.213 -13.071 19.529 Atomic orbital electron populations 1.21713 0.94731 1.01859 1.01779 1.20657 0.96315 0.92567 1.03543 1.19831 0.98717 0.96307 0.92529 1.21014 1.00160 0.95151 0.97430 1.21047 1.00810 0.94946 0.97841 1.21065 1.01007 0.99705 0.92711 1.21057 0.99636 0.94799 0.97959 1.19923 0.98189 0.93962 0.95079 1.21032 0.99646 0.99180 0.92545 1.22090 0.94593 0.95463 0.94516 1.61904 1.40209 1.18248 1.04230 1.20188 0.88583 0.91618 0.95933 1.21081 0.96841 1.13160 1.23171 0.89643 1.24888 0.98135 0.95375 0.94894 1.69891 1.35144 1.19483 1.29459 0.86928 0.86654 0.77345 0.79165 1.20480 1.21253 1.19350 1.22112 0.94064 0.93949 0.96279 1.21455 0.95819 0.95764 0.98956 1.21683 0.96958 0.97880 1.02590 1.21838 1.00288 0.98543 0.99759 0.93168 0.92238 0.92263 0.91476 0.89511 0.86454 0.86584 0.86548 0.86359 0.90542 0.89418 0.91379 0.96110 0.95773 0.99940 0.92772 0.89851 0.96211 0.90655 0.93170 0.94849 0.90752 0.93623 0.93274 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.72 37.16 0.36 -1.21 16 2 C -0.09 -1.12 5.38 -27.89 -0.15 -1.27 16 3 C -0.07 -0.92 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.36 9.68 -39.58 -0.38 -1.74 16 5 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 6 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 7 C -0.12 -1.42 9.68 -39.59 -0.38 -1.80 16 8 C -0.07 -0.93 5.13 -104.63 -0.54 -1.47 16 9 C -0.09 -1.22 3.16 -27.88 -0.09 -1.30 16 10 C 0.06 1.04 4.58 -3.82 -0.02 1.02 16 11 N -0.52 -10.37 3.83 -236.07 -0.90 -11.27 16 12 C 0.16 3.88 3.73 -4.98 -0.02 3.86 16 13 C -0.50 -13.94 8.84 -34.44 -0.30 -14.24 16 14 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 17 Si 0.87 21.50 27.37 -169.99 -4.65 16.85 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.43 6.69 56.52 0.38 -6.05 16 21 C 0.06 1.18 3.91 -3.82 -0.01 1.17 16 22 C -0.10 -1.58 2.64 -90.62 -0.24 -1.82 16 23 C -0.13 -2.28 9.14 37.16 0.34 -1.94 16 24 C -0.15 -1.99 9.19 37.16 0.34 -1.64 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.68 6.80 -51.93 -0.35 0.33 16 28 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 29 H 0.09 1.19 5.70 -51.93 -0.30 0.89 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.08 1.04 5.71 -51.93 -0.30 0.75 16 35 H 0.09 1.26 5.30 -51.93 -0.28 0.98 16 36 H 0.07 1.17 6.75 -51.93 -0.35 0.82 16 37 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 38 H 0.02 0.59 7.28 -51.93 -0.38 0.21 16 39 H -0.02 -0.41 7.21 -51.92 -0.37 -0.79 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 1.79 7.02 -51.93 -0.36 1.42 16 42 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 43 H 0.08 1.10 4.27 -51.93 -0.22 0.88 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 1.44 7.65 -51.93 -0.40 1.04 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -29.28 374.60 -10.44 -39.71 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.77 Total: 1.13 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -2.52 Total: -25.55 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.13 Total: -37.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.65 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.28 -10.44 -39.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769730077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.374 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds