Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47320 * 2 1 4 4 C 1.38262 * 119.99931 * 265.01724 * 3 2 1 5 5 C 1.38213 * 119.99908 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99916 * 359.81440 * 5 4 3 7 7 C 1.38216 * 119.99945 * 0.41915 * 6 5 4 8 8 C 1.38213 * 120.00181 * 84.99798 * 3 2 1 9 9 C 1.50695 * 119.99596 * 0.02562 * 8 3 2 10 10 C 1.53003 * 109.47520 * 84.97564 * 9 8 3 11 11 N 1.46901 * 109.46766 * 186.11706 * 10 9 8 12 12 C 1.46903 * 110.99478 * 173.67635 * 11 10 9 13 13 C 1.50698 * 109.47358 * 195.29958 * 12 11 10 14 14 H 1.08007 * 119.99425 * 5.03048 * 13 12 11 15 15 C 1.37873 * 120.00449 * 185.03017 * 13 12 11 16 16 N 1.31516 * 120.00121 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99791 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47126 * 90.00079 * 17 15 13 19 19 H 1.48504 * 109.47373 * 209.99949 * 17 15 13 20 20 H 1.48502 * 109.47275 * 330.00180 * 17 15 13 21 21 C 1.46895 * 111.00422 * 297.62888 * 11 10 9 22 22 C 1.53004 * 109.46869 * 87.99480 * 21 11 10 23 23 C 1.52999 * 109.47241 * 65.83018 * 22 21 11 24 24 C 1.52998 * 109.47116 * 185.82772 * 22 21 11 25 25 H 1.09006 * 109.46880 * 60.00426 * 1 2 3 26 26 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47496 * 300.00302 * 1 2 3 28 28 H 1.09004 * 109.47306 * 239.99731 * 2 1 3 29 29 H 1.09001 * 109.46962 * 120.00039 * 2 1 3 30 30 H 1.08006 * 119.99787 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99923 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.99909 * 180.23396 * 6 5 4 33 33 H 1.07995 * 119.99645 * 179.80790 * 7 6 5 34 34 H 1.09005 * 109.46995 * 204.97515 * 9 8 3 35 35 H 1.08999 * 109.47281 * 324.97407 * 9 8 3 36 36 H 1.08991 * 109.46669 * 306.12092 * 10 9 8 37 37 H 1.09003 * 109.46661 * 66.12365 * 10 9 8 38 38 H 1.09001 * 109.47092 * 315.30322 * 12 11 10 39 39 H 1.09007 * 109.47156 * 75.30006 * 12 11 10 40 40 H 0.97000 * 119.99955 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47359 * 207.99360 * 21 11 10 42 42 H 1.09001 * 109.47493 * 327.99497 * 21 11 10 43 43 H 1.08998 * 109.47243 * 305.82581 * 22 21 11 44 44 H 1.08999 * 109.47248 * 64.95479 * 23 22 21 45 45 H 1.08994 * 109.47258 * 184.96244 * 23 22 21 46 46 H 1.09005 * 109.46807 * 304.96400 * 23 22 21 47 47 H 1.08998 * 109.47039 * 60.00032 * 24 22 21 48 48 H 1.08996 * 109.47400 * 180.02562 * 24 22 21 49 49 H 1.09005 * 109.47295 * 300.00105 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0379 -1.1929 5 6 2.8211 3.3411 -1.1929 6 6 2.9493 4.0290 -0.0005 7 6 2.6255 3.4105 1.1924 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4925 10 6 3.0038 0.6251 2.9946 11 7 2.6104 -0.1462 4.1813 12 6 3.6891 -1.0498 4.6032 13 6 3.1397 -2.0751 5.5613 14 1 2.0800 -2.1085 5.7672 15 6 3.9897 -2.9706 6.1749 16 7 3.5102 -3.8657 7.0106 17 14 5.8226 -2.9123 5.8192 18 1 6.4858 -2.0011 6.7863 19 1 6.3960 -4.2759 5.9507 20 1 6.0433 -2.4137 4.4380 21 6 2.2099 0.7440 5.2790 22 6 0.7181 1.0622 5.1591 23 6 -0.0951 -0.2147 5.3804 24 6 0.3321 2.1017 6.2133 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2570 1.5017 -2.1247 31 1 3.0773 3.8233 -2.1247 32 1 3.3054 5.0486 -0.0009 33 1 2.7287 3.9468 2.1241 34 1 1.5430 2.1905 3.2323 35 1 0.9579 0.7686 2.3355 36 1 3.3355 -0.0567 2.2116 37 1 3.8169 1.3028 3.2549 38 1 4.1033 -1.5537 3.7300 39 1 4.4727 -0.4747 5.0966 40 1 4.1082 -4.4959 7.4420 41 1 2.4012 0.2532 6.2332 42 1 2.7842 1.6689 5.2247 43 1 0.5097 1.4581 4.1652 44 1 0.0450 -0.5619 6.4041 45 1 -1.1512 -0.0073 5.2084 46 1 0.2417 -0.9848 4.6863 47 1 0.9114 3.0115 6.0556 48 1 -0.7307 2.3281 6.1282 49 1 0.5405 1.7059 7.2073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769730077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -8.441636 kcal Electronic energy + Delta-G solvation = -23968.295825 eV Core-core repulsion = 20893.751475 eV Total energy + Delta-G solvation = -3074.544350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75620 -39.17726 -35.57273 -35.29685 -34.56538 -33.49837 -30.62420 -30.03279 -28.51046 -27.84858 -26.62270 -24.79517 -23.95594 -22.62833 -21.82907 -21.30925 -20.64367 -18.87246 -17.32446 -17.11346 -16.56057 -16.37734 -15.99800 -15.61090 -15.28502 -14.99678 -14.63068 -14.51794 -14.39591 -14.28964 -14.01122 -13.87039 -13.73876 -13.46944 -13.05115 -12.93018 -12.78851 -12.73886 -12.67807 -12.49595 -12.23712 -12.12813 -12.02403 -11.85040 -11.64067 -11.58467 -11.45670 -11.42076 -11.29261 -10.89146 -10.75749 -9.63757 -9.39922 -8.95717 -8.25014 -6.26158 0.50980 0.55284 1.32073 1.34075 1.44362 2.34688 2.88179 3.08276 3.22783 3.90071 3.94317 4.02624 4.09106 4.16157 4.23762 4.32504 4.34876 4.38484 4.48017 4.56198 4.58051 4.63362 4.67656 4.73760 4.78991 4.81508 4.88097 4.93121 4.95220 5.03464 5.07233 5.10511 5.12755 5.17952 5.21126 5.23093 5.25286 5.35405 5.38803 5.47730 5.58302 5.62018 5.67774 5.68762 5.71134 5.88261 6.08218 6.20601 6.45708 6.70904 6.82821 7.37098 8.91370 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.004687 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.659147 B = 5972.106515 C = 6664.897269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.085 4.085 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.131 4.131 7 C -0.126 4.126 8 C -0.089 4.089 9 C -0.072 4.072 10 C 0.066 3.934 11 N -0.531 5.531 12 C 0.172 3.828 13 C -0.504 4.504 14 H 0.048 0.952 15 C 0.010 3.990 16 N -0.947 5.947 17 Si 0.938 3.062 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.254 1.254 21 C 0.068 3.932 22 C -0.094 4.094 23 C -0.127 4.127 24 C -0.142 4.142 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.022 0.978 39 H -0.019 1.019 40 H 0.265 0.735 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.093 0.907 44 H 0.025 0.975 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 16.712 -15.295 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.085 4.085 4 C -0.145 4.145 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.090 4.090 9 C -0.109 4.109 10 C -0.062 4.062 11 N -0.255 5.255 12 C 0.045 3.955 13 C -0.543 4.543 14 H 0.066 0.934 15 C -0.187 4.187 16 N -0.588 5.588 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.178 1.178 21 C -0.060 4.060 22 C -0.113 4.113 23 C -0.185 4.185 24 C -0.200 4.200 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.040 0.960 39 H -0.001 1.001 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.111 0.889 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.281 16.268 -15.306 22.743 hybrid contribution 1.661 -0.235 0.708 1.821 sum -2.620 16.032 -14.598 21.840 Atomic orbital electron populations 1.21681 0.94058 1.02037 1.01928 1.20620 0.96924 0.92548 1.02852 1.19944 0.99181 0.96394 0.93015 1.21275 0.99853 0.95739 0.97621 1.21411 0.99565 0.94653 0.98918 1.21383 1.00351 1.00797 0.92314 1.21249 0.99577 0.94511 0.99054 1.19859 0.99886 0.94683 0.94556 1.20815 0.97921 0.98675 0.93462 1.22106 0.96076 0.95223 0.92783 1.61842 1.38848 1.19208 1.05563 1.19933 0.89388 0.91514 0.94653 1.21279 0.95308 1.14049 1.23632 0.93373 1.25736 1.03213 0.94985 0.94731 1.70040 1.37031 1.20700 1.31041 0.85851 0.80504 0.77635 0.79745 1.19617 1.20773 1.17843 1.22096 0.96362 0.93625 0.93959 1.21426 0.93354 0.95650 1.00828 1.21599 0.98871 0.97886 1.00137 1.21796 1.01885 0.98179 0.98091 0.91953 0.92072 0.93084 0.90441 0.91880 0.84756 0.84034 0.84255 0.85513 0.89921 0.90075 0.92080 0.96039 0.96018 1.00103 0.92635 0.93641 0.94666 0.88907 0.95611 0.92177 0.93736 0.91913 0.91246 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.72 71.98 0.70 -2.22 16 2 C -0.09 -2.13 5.38 29.85 0.16 -1.97 16 3 C -0.09 -2.00 5.13 -19.86 -0.10 -2.10 16 4 C -0.13 -2.55 9.68 22.27 0.22 -2.33 16 5 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 6 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 7 C -0.13 -2.76 9.68 22.27 0.22 -2.55 16 8 C -0.09 -2.20 5.13 -19.87 -0.10 -2.30 16 9 C -0.07 -1.93 3.16 29.85 0.09 -1.84 16 10 C 0.07 2.20 4.58 86.30 0.40 2.60 16 11 N -0.53 -21.47 3.83 -900.78 -3.45 -24.92 16 12 C 0.17 8.34 3.73 85.56 0.32 8.66 16 13 C -0.50 -29.04 8.84 25.60 0.23 -28.82 16 14 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 15 C 0.01 0.61 5.47 84.65 0.46 1.07 16 16 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 17 Si 0.94 44.82 27.37 68.60 1.88 46.70 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.25 -11.48 6.69 99.48 0.67 -10.81 16 21 C 0.07 2.52 3.91 86.31 0.34 2.86 16 22 C -0.09 -2.89 2.64 -10.79 -0.03 -2.92 16 23 C -0.13 -4.47 9.14 71.98 0.66 -3.81 16 24 C -0.14 -3.60 9.19 71.98 0.66 -2.94 16 25 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.13 6.80 -2.39 -0.02 1.12 16 28 H 0.08 1.58 8.05 -2.39 -0.02 1.56 16 29 H 0.06 1.75 5.70 -2.39 -0.01 1.74 16 30 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.08 2.09 5.71 -2.38 -0.01 2.08 16 35 H 0.08 2.29 5.30 -2.39 -0.01 2.28 16 36 H 0.06 2.11 6.75 -2.39 -0.02 2.10 16 37 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 38 H 0.02 1.06 7.28 -2.39 -0.02 1.04 16 39 H -0.02 -0.91 7.21 -2.38 -0.02 -0.93 16 40 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.04 2.03 7.02 -2.39 -0.02 2.01 16 42 H 0.04 1.19 7.72 -2.39 -0.02 1.17 16 43 H 0.09 2.57 4.27 -2.39 -0.01 2.56 16 44 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.04 1.80 7.65 -2.38 -0.02 1.79 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -65.33 374.60 4.24 -61.10 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.85 Total: 19.19 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 4.66 Total: -42.92 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -3.15 Total: -84.05 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -65.33 4.24 -61.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769730077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.654 kcal (2) G-P(sol) polarization free energy of solvation -65.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds