Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47196 * 2 1 4 4 C 1.53002 * 109.47078 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46827 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46944 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47644 * 304.99781 * 6 5 4 8 8 C 1.53002 * 109.47047 * 185.00049 * 6 5 4 9 9 N 1.46900 * 109.47367 * 64.99933 * 6 5 4 10 10 C 1.46894 * 111.00348 * 204.99739 * 9 6 5 11 11 H 1.09001 * 109.47313 * 325.00318 * 10 9 6 12 12 C 1.52997 * 109.47141 * 204.99737 * 10 9 6 13 13 C 1.50703 * 109.47231 * 65.00498 * 12 10 9 14 14 H 1.08004 * 119.99386 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00123 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99690 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47605 * 59.99879 * 17 15 13 19 19 H 1.48507 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47212 * 299.99556 * 17 15 13 21 21 C 1.50706 * 109.47120 * 85.00053 * 10 9 6 22 22 C 1.38234 * 120.00196 * 220.00289 * 21 10 9 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 10 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99899 * 359.95697 * 24 23 22 26 26 C 1.38234 * 120.00205 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46983 * 300.00216 * 1 2 3 29 29 H 1.08996 * 109.47043 * 60.00113 * 1 2 3 30 30 H 1.08995 * 109.47302 * 239.99660 * 2 1 3 31 31 H 1.09003 * 109.47354 * 119.99629 * 2 1 3 32 32 H 1.08995 * 109.47272 * 59.99642 * 3 2 1 33 33 H 1.09003 * 109.46667 * 300.00051 * 3 2 1 34 34 H 1.08998 * 109.47099 * 59.99632 * 4 3 2 35 35 H 1.08996 * 109.46871 * 299.99709 * 4 3 2 36 36 H 1.09007 * 109.47262 * 59.99909 * 5 4 3 37 37 H 1.08996 * 109.47352 * 299.99652 * 5 4 3 38 38 H 1.08997 * 109.46952 * 299.99633 * 8 6 5 39 39 H 1.08994 * 109.47233 * 60.00146 * 8 6 5 40 40 H 1.09002 * 109.47236 * 180.02562 * 8 6 5 41 41 H 1.00903 * 110.99545 * 81.04192 * 9 6 5 42 42 H 1.09003 * 109.47187 * 185.00062 * 12 10 9 43 43 H 1.09000 * 109.47619 * 305.00206 * 12 10 9 44 44 H 0.96993 * 120.00619 * 180.02562 * 16 15 13 45 45 H 1.08000 * 119.99516 * 0.24808 * 22 21 10 46 46 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00371 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00043 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.00455 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0013 7 1 5.9734 2.2960 0.8408 8 6 6.1199 4.3221 0.1238 9 7 6.0997 2.2991 -1.2562 10 6 7.4470 1.7393 -1.0854 11 1 8.0109 2.3565 -0.3860 12 6 8.1641 1.7147 -2.4367 13 6 8.3772 3.1267 -2.9182 14 1 8.0350 3.9585 -2.3202 15 6 9.0091 3.3567 -4.1218 16 7 9.4263 2.3439 -4.8497 17 14 9.2739 5.1070 -4.7181 18 1 10.1016 5.8463 -3.7315 19 1 9.9710 5.0832 -6.0293 20 1 7.9603 5.7831 -4.8677 21 6 7.3432 0.3359 -0.5462 22 6 8.2329 -0.1021 0.4168 23 6 8.1373 -1.3893 0.9118 24 6 7.1517 -2.2382 0.4442 25 6 6.2611 -1.7998 -0.5177 26 6 6.3564 -0.5125 -1.0125 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 3.7170 3.3992 0.8887 37 1 3.7163 3.3986 -0.8913 38 1 5.7566 4.9111 -0.7183 39 1 5.7566 4.7568 1.0549 40 1 7.2099 4.3222 0.1233 41 1 6.0819 2.9774 -2.0030 42 1 9.1285 1.2187 -2.3272 43 1 7.5564 1.1718 -3.1607 44 1 9.8711 2.5056 -5.6962 45 1 8.9999 0.5628 0.7856 46 1 8.8328 -1.7315 1.6639 47 1 7.0773 -3.2440 0.8306 48 1 5.4913 -2.4632 -0.8834 49 1 5.6609 -0.1700 -1.7644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773091380.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -20.597710 kcal Electronic energy + Delta-G solvation = -23682.750020 eV Core-core repulsion = 20607.678543 eV Total energy + Delta-G solvation = -3075.071477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.04109 -37.26744 -35.63738 -33.69692 -32.24593 -30.74763 -30.37919 -29.12060 -27.59654 -26.19413 -24.43651 -22.26049 -22.02732 -21.82419 -20.77373 -19.95107 -19.51843 -16.59347 -16.09773 -15.72589 -15.14981 -14.77153 -14.63745 -14.24846 -14.06362 -13.91889 -13.36773 -13.14848 -13.10728 -12.83567 -12.61262 -12.29021 -12.16391 -12.01968 -11.85842 -11.83212 -11.48566 -11.08064 -11.06526 -10.89126 -10.86606 -10.61249 -10.56600 -10.50679 -10.44936 -10.23554 -10.14434 -10.02667 -9.54263 -9.17629 -8.43535 -8.37200 -8.02886 -7.63863 -6.04455 -4.08381 1.90479 1.95862 3.29125 3.34731 3.36055 4.33105 4.42289 4.81812 4.87425 4.99841 5.15004 5.30195 5.34138 5.36921 5.40796 5.43877 5.46916 5.51050 5.66482 5.72867 5.76041 5.81302 5.81961 5.87592 6.03024 6.06570 6.09320 6.11911 6.14638 6.20469 6.26903 6.29333 6.32889 6.41722 6.49985 6.55790 6.64778 6.68227 6.77774 6.80604 6.95794 7.02274 7.26933 7.50596 7.58106 7.61554 7.94346 8.05164 8.27491 8.33932 8.97319 9.55931 11.06095 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.005002 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.897779 B = 5596.676145 C = 6939.038586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.103 4.103 6 C 0.084 3.916 7 H 0.067 0.933 8 C -0.180 4.180 9 N -0.672 5.672 10 C 0.127 3.873 11 H 0.040 0.960 12 C 0.029 3.971 13 C -0.525 4.525 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.051 4.051 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.130 4.130 26 C -0.085 4.085 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.357 0.643 42 H 0.021 0.979 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.518 -4.178 11.346 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.148 4.148 5 C -0.141 4.141 6 C -0.027 4.027 7 H 0.085 0.915 8 C -0.239 4.239 9 N -0.305 5.305 10 C 0.018 3.982 11 H 0.058 0.942 12 C -0.008 4.008 13 C -0.563 4.563 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.051 4.051 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.179 0.821 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.130 0.870 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.741 -4.812 11.251 16.959 hybrid contribution 0.877 1.767 -0.314 1.997 sum -10.864 -3.046 10.937 15.714 Atomic orbital electron populations 1.21785 0.96473 1.01180 1.01501 1.21524 0.95192 0.97483 1.01999 1.21645 0.96688 0.96117 1.01264 1.21502 0.93457 0.97002 1.02800 1.21534 0.94880 0.96899 1.00784 1.21542 0.94519 0.92867 0.93759 0.91466 1.22497 1.01822 0.98370 1.01244 1.60537 1.24329 1.39674 1.05992 1.20621 0.88859 0.89198 0.99544 0.94246 1.19236 0.95168 0.97236 0.89157 1.21105 1.38484 0.92133 1.04571 0.92825 1.24962 0.95530 0.96678 0.96729 1.69949 1.39260 1.30252 1.13303 0.86713 0.78390 0.85196 0.78016 1.20391 1.21302 1.20194 1.20220 0.93892 0.96965 0.94057 1.21037 0.99428 0.96114 0.97786 1.20952 0.98769 0.94283 1.00617 1.20948 0.96723 0.99107 0.98881 1.21106 0.99382 0.96372 0.97967 1.21023 0.97847 0.92349 0.99080 0.93130 0.93102 0.92891 0.91935 0.92347 0.92901 0.92363 0.90244 0.93024 0.93010 0.92221 0.92540 0.93271 0.92401 0.82090 0.96078 0.95432 0.92863 0.86871 0.87092 0.87242 0.87037 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.28 5.93 -26.73 -0.16 -1.44 16 3 C -0.12 -1.32 5.21 -26.73 -0.14 -1.46 16 4 C -0.11 -1.41 5.10 -26.73 -0.14 -1.54 16 5 C -0.10 -1.35 4.89 -26.73 -0.13 -1.48 16 6 C 0.08 1.27 2.39 -67.71 -0.16 1.10 16 7 H 0.07 1.07 7.64 -51.93 -0.40 0.67 16 8 C -0.18 -2.68 9.15 37.16 0.34 -2.34 16 9 N -0.67 -11.89 4.75 -100.96 -0.48 -12.37 16 10 C 0.13 2.53 2.01 -68.87 -0.14 2.39 16 11 H 0.04 0.81 6.97 -51.93 -0.36 0.45 16 12 C 0.03 0.72 4.55 -27.88 -0.13 0.60 16 13 C -0.52 -13.86 8.12 -34.44 -0.28 -14.14 16 14 H 0.05 1.36 7.49 -52.48 -0.39 0.97 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.05 -0.92 4.61 -104.62 -0.48 -1.41 16 22 C -0.13 -2.12 9.67 -39.58 -0.38 -2.50 16 23 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 24 C -0.14 -1.99 10.05 -39.59 -0.40 -2.39 16 25 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 26 C -0.08 -1.46 9.10 -39.58 -0.36 -1.82 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.15 6.92 -51.93 -0.36 0.79 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.95 7.43 -51.93 -0.39 0.56 16 41 H 0.36 6.99 6.95 -39.29 -0.27 6.71 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.11 1.82 8.04 -52.49 -0.42 1.40 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 49 H 0.13 2.24 7.11 -52.49 -0.37 1.87 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -27.51 390.14 -11.25 -38.76 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -9.29 Total: 7.45 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -3.08 Total: -30.46 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.26 Total: -37.65 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -27.51 -11.25 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773091380.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.164 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds