Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47196 * 2 1 4 4 C 1.53002 * 109.47078 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46827 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46944 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47644 * 304.99781 * 6 5 4 8 8 C 1.53002 * 109.47047 * 185.00049 * 6 5 4 9 9 N 1.46900 * 109.47367 * 64.99933 * 6 5 4 10 10 C 1.46894 * 111.00348 * 204.99739 * 9 6 5 11 11 H 1.09001 * 109.47313 * 325.00318 * 10 9 6 12 12 C 1.52997 * 109.47141 * 204.99737 * 10 9 6 13 13 C 1.50703 * 109.47231 * 65.00498 * 12 10 9 14 14 H 1.08004 * 119.99386 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00123 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99690 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47605 * 59.99879 * 17 15 13 19 19 H 1.48507 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47212 * 299.99556 * 17 15 13 21 21 C 1.50706 * 109.47120 * 85.00053 * 10 9 6 22 22 C 1.38234 * 120.00196 * 220.00289 * 21 10 9 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 10 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99899 * 359.95697 * 24 23 22 26 26 C 1.38234 * 120.00205 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46983 * 300.00216 * 1 2 3 29 29 H 1.08996 * 109.47043 * 60.00113 * 1 2 3 30 30 H 1.08995 * 109.47302 * 239.99660 * 2 1 3 31 31 H 1.09003 * 109.47354 * 119.99629 * 2 1 3 32 32 H 1.08995 * 109.47272 * 59.99642 * 3 2 1 33 33 H 1.09003 * 109.46667 * 300.00051 * 3 2 1 34 34 H 1.08998 * 109.47099 * 59.99632 * 4 3 2 35 35 H 1.08996 * 109.46871 * 299.99709 * 4 3 2 36 36 H 1.09007 * 109.47262 * 59.99909 * 5 4 3 37 37 H 1.08996 * 109.47352 * 299.99652 * 5 4 3 38 38 H 1.08997 * 109.46952 * 299.99633 * 8 6 5 39 39 H 1.08994 * 109.47233 * 60.00146 * 8 6 5 40 40 H 1.09002 * 109.47236 * 180.02562 * 8 6 5 41 41 H 1.00903 * 110.99545 * 81.04192 * 9 6 5 42 42 H 1.09003 * 109.47187 * 185.00062 * 12 10 9 43 43 H 1.09000 * 109.47619 * 305.00206 * 12 10 9 44 44 H 0.96993 * 120.00619 * 180.02562 * 16 15 13 45 45 H 1.08000 * 119.99516 * 0.24808 * 22 21 10 46 46 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00371 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00043 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.00455 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0013 7 1 5.9734 2.2960 0.8408 8 6 6.1199 4.3221 0.1238 9 7 6.0997 2.2991 -1.2562 10 6 7.4470 1.7393 -1.0854 11 1 8.0109 2.3565 -0.3860 12 6 8.1641 1.7147 -2.4367 13 6 8.3772 3.1267 -2.9182 14 1 8.0350 3.9585 -2.3202 15 6 9.0091 3.3567 -4.1218 16 7 9.4263 2.3439 -4.8497 17 14 9.2739 5.1070 -4.7181 18 1 10.1016 5.8463 -3.7315 19 1 9.9710 5.0832 -6.0293 20 1 7.9603 5.7831 -4.8677 21 6 7.3432 0.3359 -0.5462 22 6 8.2329 -0.1021 0.4168 23 6 8.1373 -1.3893 0.9118 24 6 7.1517 -2.2382 0.4442 25 6 6.2611 -1.7998 -0.5177 26 6 6.3564 -0.5125 -1.0125 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 3.7170 3.3992 0.8887 37 1 3.7163 3.3986 -0.8913 38 1 5.7566 4.9111 -0.7183 39 1 5.7566 4.7568 1.0549 40 1 7.2099 4.3222 0.1233 41 1 6.0819 2.9774 -2.0030 42 1 9.1285 1.2187 -2.3272 43 1 7.5564 1.1718 -3.1607 44 1 9.8711 2.5056 -5.6962 45 1 8.9999 0.5628 0.7856 46 1 8.8328 -1.7315 1.6639 47 1 7.0773 -3.2440 0.8306 48 1 5.4913 -2.4632 -0.8834 49 1 5.6609 -0.1700 -1.7644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773091380.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -32.052267 kcal Electronic energy + Delta-G solvation = -23683.246727 eV Core-core repulsion = 20607.678543 eV Total energy + Delta-G solvation = -3075.568184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.38950 -38.50867 -36.76223 -35.29097 -33.95815 -31.81669 -31.63416 -30.60674 -29.25946 -27.18422 -26.20024 -23.66221 -23.28715 -23.07898 -21.71264 -21.18457 -20.99053 -18.54722 -17.48537 -16.90553 -16.64377 -16.29837 -15.95387 -15.66471 -15.25850 -14.96318 -14.55880 -14.48699 -14.27966 -14.04153 -13.98405 -13.73433 -13.62211 -13.44598 -13.17678 -12.89453 -12.80237 -12.71132 -12.46505 -12.36802 -12.22494 -12.04409 -11.88118 -11.77292 -11.54867 -11.50218 -11.34988 -11.20892 -11.17838 -11.04140 -10.56686 -9.64936 -9.39200 -9.09402 -8.18058 -6.29110 0.62644 0.69289 1.39875 1.41435 1.49058 2.40201 3.05582 3.14033 3.49103 3.83028 4.10416 4.16055 4.16951 4.25185 4.27284 4.31444 4.40383 4.43687 4.48354 4.58559 4.63012 4.74950 4.81830 4.83692 4.85931 4.88604 4.91856 4.98354 5.00772 5.11523 5.17098 5.19781 5.24998 5.31688 5.33223 5.34710 5.40852 5.46088 5.50267 5.53876 5.63767 5.70828 5.74169 5.77549 5.83826 5.95023 6.19546 6.30102 6.50178 6.72926 6.85687 7.39719 8.93110 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.005002 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.897779 B = 5596.676145 C = 6939.038586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.096 4.096 6 C 0.086 3.914 7 H 0.061 0.939 8 C -0.176 4.176 9 N -0.668 5.668 10 C 0.145 3.855 11 H 0.027 0.973 12 C 0.042 3.958 13 C -0.531 4.531 14 H 0.062 0.938 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.075 4.075 22 C -0.142 4.142 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.097 4.097 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.344 0.656 42 H -0.015 1.015 43 H -0.003 1.003 44 H 0.262 0.738 45 H 0.113 0.887 46 H 0.140 0.860 47 H 0.145 0.855 48 H 0.136 0.864 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 -4.214 13.029 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.024 4.024 7 H 0.079 0.921 8 C -0.234 4.234 9 N -0.299 5.299 10 C 0.035 3.965 11 H 0.045 0.955 12 C 0.005 3.995 13 C -0.569 4.569 14 H 0.080 0.920 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.076 4.076 22 C -0.160 4.160 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.115 4.115 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.164 0.836 42 H 0.003 0.997 43 H 0.015 0.985 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.158 0.842 47 H 0.163 0.837 48 H 0.154 0.846 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.130 -4.846 12.960 19.075 hybrid contribution 1.308 1.690 -0.788 2.278 sum -11.822 -3.156 12.171 17.259 Atomic orbital electron populations 1.21764 0.95258 1.01829 1.01862 1.21509 0.96260 0.96811 1.01594 1.21590 0.95110 0.96809 1.01652 1.21402 0.94833 0.96368 1.01484 1.21490 0.92972 0.97386 1.01569 1.21598 0.95962 0.92802 0.92030 0.92080 1.22439 1.00416 0.98109 1.02472 1.60575 1.22823 1.39591 1.06946 1.20238 0.89254 0.90822 0.96210 0.95459 1.18997 0.93354 0.95812 0.91338 1.21461 1.37759 0.93013 1.04636 0.92023 1.25851 0.95318 1.00906 0.97019 1.70096 1.40445 1.32670 1.13799 0.85612 0.78721 0.80026 0.77341 1.19630 1.21251 1.18945 1.20121 0.95563 0.96217 0.95720 1.21189 0.99307 0.97478 0.98037 1.21301 0.99244 0.93229 1.00662 1.21377 0.95435 1.00454 0.97697 1.21401 1.00085 0.95598 0.97766 1.20991 0.97663 0.93509 0.99337 0.92390 0.92398 0.92869 0.92829 0.92299 0.91818 0.92558 0.92331 0.93541 0.90977 0.92504 0.92763 0.90769 0.94478 0.83555 0.99651 0.98461 0.92908 0.86917 0.84174 0.83705 0.84586 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.39 5.93 30.59 0.18 -2.21 16 3 C -0.11 -2.35 5.21 30.60 0.16 -2.19 16 4 C -0.10 -2.57 5.10 30.60 0.16 -2.42 16 5 C -0.10 -2.43 4.89 30.59 0.15 -2.28 16 6 C 0.09 2.60 2.39 44.91 0.11 2.71 16 7 H 0.06 1.94 7.64 -2.39 -0.02 1.92 16 8 C -0.18 -5.11 9.15 71.98 0.66 -4.45 16 9 N -0.67 -24.54 4.75 -473.32 -2.25 -26.78 16 10 C 0.14 6.04 2.01 44.17 0.09 6.13 16 11 H 0.03 1.19 6.97 -2.39 -0.02 1.17 16 12 C 0.04 2.22 4.55 29.85 0.14 2.36 16 13 C -0.53 -29.04 8.12 25.60 0.21 -28.83 16 14 H 0.06 3.20 7.49 -2.91 -0.02 3.18 16 15 C 0.01 0.42 5.46 84.65 0.46 0.88 16 16 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 17 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 C -0.08 -2.85 4.61 -19.86 -0.09 -2.94 16 22 C -0.14 -4.83 9.67 22.27 0.22 -4.61 16 23 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 24 C -0.13 -3.43 10.05 22.27 0.22 -3.20 16 25 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 26 C -0.10 -3.38 9.10 22.27 0.20 -3.18 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.71 6.92 -2.39 -0.02 1.70 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.04 1.22 7.43 -2.39 -0.02 1.20 16 41 H 0.34 14.02 6.95 -89.69 -0.62 13.40 16 42 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.11 3.73 8.04 -2.91 -0.02 3.70 16 46 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 48 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 49 H 0.11 4.23 7.11 -2.91 -0.02 4.21 16 Total: -1.00 -61.46 390.14 4.33 -57.13 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.25 Total: 32.73 kcal Atomic # 6 Polarization: -56.80 SS G_CDS: 4.02 Total: -52.78 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.96 Total: -82.84 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -61.46 4.33 -57.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773091380.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.075 kcal (2) G-P(sol) polarization free energy of solvation -61.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds