Wall clock time and date at job start Tue Mar 31 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 C 1.52996 * 109.47184 * 120.00358 * 2 1 3 5 5 N 1.46901 * 109.47195 * 60.94806 * 4 2 1 6 6 C 1.46898 * 110.99674 * 73.45224 * 5 4 2 7 7 C 1.50699 * 109.47350 * 279.62384 * 6 5 4 8 8 H 1.08000 * 119.99602 * 2.94346 * 7 6 5 9 9 C 1.37873 * 119.99871 * 182.94244 * 7 6 5 10 10 N 1.31513 * 120.00563 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99964 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46763 * 59.99851 * 11 9 7 13 13 H 1.48492 * 109.47519 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46995 * 300.00272 * 11 9 7 15 15 C 1.46900 * 110.99901 * 197.40298 * 5 4 2 16 16 C 1.53001 * 109.47081 * 66.05230 * 15 5 4 17 17 C 1.53000 * 109.47205 * 179.97438 * 16 15 5 18 18 H 1.08992 * 109.47068 * 55.00026 * 17 16 15 19 19 C 1.52999 * 109.46818 * 294.99637 * 17 16 15 20 20 C 1.50707 * 109.46899 * 175.00093 * 17 16 15 21 21 C 1.38233 * 120.00332 * 59.72671 * 20 17 16 22 22 C 1.38224 * 119.99931 * 179.81204 * 21 20 17 23 23 C 1.38236 * 120.00191 * 0.39316 * 22 21 20 24 24 C 1.38232 * 119.99908 * 359.85741 * 23 22 21 25 25 C 1.38229 * 120.00034 * 359.95473 * 24 23 22 26 26 H 1.09006 * 109.47302 * 59.99608 * 1 2 3 27 27 H 1.08996 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47078 * 299.99972 * 1 2 3 29 29 H 1.08999 * 109.46589 * 239.99867 * 2 1 3 30 30 H 1.09001 * 109.47378 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46991 * 300.00104 * 3 2 1 32 32 H 1.09002 * 109.47094 * 60.00038 * 3 2 1 33 33 H 1.09002 * 109.46894 * 300.95163 * 4 2 1 34 34 H 1.08998 * 109.47044 * 180.95383 * 4 2 1 35 35 H 1.09001 * 109.47236 * 39.62639 * 6 5 4 36 36 H 1.09003 * 109.46938 * 159.61920 * 6 5 4 37 37 H 0.96998 * 120.00644 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.47351 * 306.05110 * 15 5 4 39 39 H 1.08996 * 109.47051 * 186.04737 * 15 5 4 40 40 H 1.09002 * 109.47126 * 59.99742 * 16 15 5 41 41 H 1.09005 * 109.46948 * 299.99904 * 16 15 5 42 42 H 1.08996 * 109.47091 * 60.00260 * 19 17 16 43 43 H 1.09001 * 109.46977 * 179.97438 * 19 17 16 44 44 H 1.09004 * 109.47271 * 299.99813 * 19 17 16 45 45 H 1.08005 * 119.99629 * 359.97438 * 21 20 17 46 46 H 1.08005 * 120.00358 * 180.23254 * 22 21 20 47 47 H 1.08003 * 120.00070 * 179.83836 * 23 22 21 48 48 H 1.08000 * 119.99966 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00159 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5692 -2.1128 1.2377 6 6 2.3016 -2.9081 0.2432 7 6 1.7233 -2.6571 -1.1256 8 1 0.9262 -1.9394 -1.2516 9 6 2.2119 -3.3436 -2.2168 10 7 3.1829 -4.2172 -2.0634 11 14 1.4956 -3.0319 -3.9137 12 1 1.6825 -1.6037 -4.2751 13 1 2.1882 -3.8896 -4.9086 14 1 0.0462 -3.3550 -3.9061 15 6 1.6734 -2.7148 2.5736 16 6 0.7056 -2.0110 3.5270 17 6 0.8137 -2.6385 4.9183 18 1 1.8510 -2.6077 5.2511 19 6 0.3394 -4.0920 4.8604 20 6 -0.0474 -1.8673 5.8853 21 6 -1.4081 -1.7613 5.6665 22 6 -2.1984 -1.0573 6.5556 23 6 -1.6267 -0.4523 7.6592 24 6 -0.2651 -0.5539 7.8754 25 6 0.5246 -1.2613 6.9883 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6628 -0.2174 2.1391 34 1 3.1299 -0.7065 1.2577 35 1 3.3531 -2.6213 0.2516 36 1 2.2118 -3.9667 0.4871 37 1 3.5264 -4.7005 -2.8311 38 1 2.6927 -2.6042 2.9435 39 1 1.4207 -3.7735 2.5157 40 1 -0.3137 -2.1217 3.1571 41 1 0.9582 -0.9522 3.5849 42 1 0.9621 -4.6497 4.1609 43 1 0.4168 -4.5391 5.8514 44 1 -0.6981 -4.1227 4.5275 45 1 -1.8542 -2.2308 4.8021 46 1 -3.2621 -0.9776 6.3866 47 1 -2.2438 0.1000 8.3525 48 1 0.1816 -0.0810 8.7374 49 1 1.5884 -1.3403 7.1569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774819869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:47 Heat of formation + Delta-G solvation = 2.316590 kcal Electronic energy + Delta-G solvation = -23484.768785 eV Core-core repulsion = 20410.690946 eV Total energy + Delta-G solvation = -3074.077838 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.58206 -37.73807 -35.58046 -33.48804 -32.47949 -30.95757 -30.04998 -28.29700 -26.69238 -26.40592 -25.20876 -23.66667 -22.69478 -21.81962 -20.50815 -19.66292 -18.92598 -16.91777 -16.31645 -15.41316 -15.34037 -14.97826 -14.63331 -14.30894 -14.07262 -13.63992 -13.55048 -13.32228 -13.25971 -12.89747 -12.46794 -12.39011 -12.18736 -12.05178 -11.70632 -11.60529 -11.47252 -11.26353 -11.12080 -11.06481 -10.79813 -10.64007 -10.50512 -10.43018 -10.18842 -10.13910 -10.02677 -9.79515 -9.26006 -9.02275 -8.96330 -8.68402 -8.33737 -7.15645 -5.97027 -3.95774 1.33183 1.35884 3.35759 3.40055 3.42858 3.75082 4.45063 4.65096 4.77383 4.92620 4.96775 5.06163 5.20201 5.33094 5.38172 5.43635 5.51187 5.53682 5.65896 5.70445 5.79538 5.80539 5.92997 5.96606 6.01253 6.06212 6.12194 6.15153 6.21189 6.26457 6.31397 6.36796 6.43838 6.46199 6.47003 6.53321 6.57594 6.67150 6.71964 6.77361 6.86180 6.97421 7.22597 7.29186 7.37592 7.46129 7.92641 8.19770 8.31117 8.62654 9.11270 9.66275 11.13449 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.003624 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.682081 B = 7725.367323 C = 8300.600082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C -0.144 4.144 4 C 0.074 3.926 5 N -0.533 5.533 6 C 0.193 3.807 7 C -0.502 4.502 8 H 0.077 0.923 9 C 0.053 3.947 10 N -0.901 5.901 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.057 3.943 16 C -0.104 4.104 17 C -0.054 4.054 18 H 0.074 0.926 19 C -0.144 4.144 20 C -0.066 4.066 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.121 4.121 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.018 0.982 35 H -0.010 1.010 36 H 0.026 0.974 37 H 0.260 0.740 38 H 0.017 0.983 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 6.500 16.774 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 C -0.201 4.201 4 C -0.054 4.054 5 N -0.257 5.257 6 C 0.067 3.933 7 C -0.540 4.540 8 H 0.095 0.905 9 C -0.148 4.148 10 N -0.541 5.541 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.072 4.072 16 C -0.142 4.142 17 C -0.073 4.073 18 H 0.092 0.908 19 C -0.201 4.201 20 C -0.066 4.066 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.139 4.139 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.008 0.992 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.141 0.859 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.923 6.359 16.526 19.012 hybrid contribution 0.621 0.139 -0.670 0.924 sum -6.302 6.498 15.856 18.258 Atomic orbital electron populations 1.21644 0.95692 1.02554 0.98670 1.21440 0.96058 0.93877 1.01203 1.21837 1.00344 0.97573 1.00394 1.22000 0.96088 0.90213 0.97128 1.62095 1.57814 1.01684 1.04125 1.19776 0.91122 0.92476 0.89880 1.21408 1.19034 1.22515 0.91084 0.90498 1.25007 0.95294 0.95352 0.99124 1.69950 1.27115 1.26383 1.30659 0.86665 0.79299 0.78123 0.83990 1.20241 1.21533 1.20204 1.22091 0.96028 0.98907 0.90167 1.21678 1.01101 0.99347 0.92084 1.20210 0.98125 0.94649 0.94327 0.90771 1.21879 1.01784 0.94985 1.01433 1.19987 0.94190 0.97149 0.95257 1.21073 0.93438 0.99154 0.99329 1.21144 0.99739 0.97984 0.94918 1.21094 0.95146 1.00597 0.98130 1.21098 0.94042 0.99451 0.99357 1.21095 0.99732 0.98307 0.94774 0.94736 0.90688 0.94834 0.87147 0.93516 0.93362 0.93991 0.93017 0.96357 0.99219 0.95632 0.93048 0.96509 0.91148 0.91114 0.92171 0.91629 0.93151 0.92395 0.85869 0.86304 0.86518 0.86432 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.40 37.16 0.31 -1.99 16 2 C -0.11 -2.04 2.40 -90.62 -0.22 -2.26 16 3 C -0.14 -2.29 9.19 37.16 0.34 -1.95 16 4 C 0.07 1.42 4.27 -3.83 -0.02 1.40 16 5 N -0.53 -11.06 3.71 -236.07 -0.88 -11.93 16 6 C 0.19 4.89 4.78 -4.98 -0.02 4.87 16 7 C -0.50 -13.54 7.24 -34.44 -0.25 -13.79 16 8 H 0.08 2.01 4.58 -52.49 -0.24 1.77 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.06 0.99 4.68 -3.82 -0.02 0.97 16 16 C -0.10 -1.51 4.39 -26.73 -0.12 -1.62 16 17 C -0.05 -0.66 2.56 -91.77 -0.24 -0.90 16 18 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 19 C -0.14 -1.68 8.76 37.16 0.33 -1.35 16 20 C -0.07 -0.78 4.78 -104.62 -0.50 -1.28 16 21 C -0.11 -1.29 8.76 -39.59 -0.35 -1.64 16 22 C -0.12 -1.25 10.05 -39.59 -0.40 -1.64 16 23 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.61 16 25 C -0.12 -1.33 9.67 -39.58 -0.38 -1.72 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.50 6.73 -51.93 -0.35 1.15 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.11 2.50 5.14 -51.93 -0.27 2.23 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.90 5.91 -51.93 -0.31 0.59 16 34 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 35 H -0.01 -0.28 7.67 -51.93 -0.40 -0.67 16 36 H 0.03 0.70 7.65 -51.93 -0.40 0.30 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 39 H 0.07 1.26 6.22 -51.93 -0.32 0.93 16 40 H 0.07 1.06 7.55 -51.93 -0.39 0.67 16 41 H 0.06 0.90 6.27 -51.93 -0.33 0.57 16 42 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.67 7.41 -51.93 -0.38 0.28 16 45 H 0.12 1.36 7.16 -52.48 -0.38 0.99 16 46 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 49 H 0.12 1.15 7.95 -52.49 -0.42 0.73 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -28.73 375.21 -10.61 -39.35 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.69 Total: 1.13 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -2.42 Total: -24.83 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.14 Total: -37.76 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.73 -10.61 -39.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774819869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.665 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds