Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 C 1.52996 * 109.47184 * 120.00358 * 2 1 3 5 5 N 1.46901 * 109.47195 * 60.94806 * 4 2 1 6 6 C 1.46898 * 110.99674 * 73.45224 * 5 4 2 7 7 C 1.50699 * 109.47350 * 279.62384 * 6 5 4 8 8 H 1.08000 * 119.99602 * 2.94346 * 7 6 5 9 9 C 1.37873 * 119.99871 * 182.94244 * 7 6 5 10 10 N 1.31513 * 120.00563 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99964 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46763 * 59.99851 * 11 9 7 13 13 H 1.48492 * 109.47519 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46995 * 300.00272 * 11 9 7 15 15 C 1.46900 * 110.99901 * 197.40298 * 5 4 2 16 16 C 1.53001 * 109.47081 * 66.05230 * 15 5 4 17 17 C 1.53000 * 109.47205 * 179.97438 * 16 15 5 18 18 H 1.08992 * 109.47068 * 55.00026 * 17 16 15 19 19 C 1.52999 * 109.46818 * 294.99637 * 17 16 15 20 20 C 1.50707 * 109.46899 * 175.00093 * 17 16 15 21 21 C 1.38233 * 120.00332 * 59.72671 * 20 17 16 22 22 C 1.38224 * 119.99931 * 179.81204 * 21 20 17 23 23 C 1.38236 * 120.00191 * 0.39316 * 22 21 20 24 24 C 1.38232 * 119.99908 * 359.85741 * 23 22 21 25 25 C 1.38229 * 120.00034 * 359.95473 * 24 23 22 26 26 H 1.09006 * 109.47302 * 59.99608 * 1 2 3 27 27 H 1.08996 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47078 * 299.99972 * 1 2 3 29 29 H 1.08999 * 109.46589 * 239.99867 * 2 1 3 30 30 H 1.09001 * 109.47378 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46991 * 300.00104 * 3 2 1 32 32 H 1.09002 * 109.47094 * 60.00038 * 3 2 1 33 33 H 1.09002 * 109.46894 * 300.95163 * 4 2 1 34 34 H 1.08998 * 109.47044 * 180.95383 * 4 2 1 35 35 H 1.09001 * 109.47236 * 39.62639 * 6 5 4 36 36 H 1.09003 * 109.46938 * 159.61920 * 6 5 4 37 37 H 0.96998 * 120.00644 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.47351 * 306.05110 * 15 5 4 39 39 H 1.08996 * 109.47051 * 186.04737 * 15 5 4 40 40 H 1.09002 * 109.47126 * 59.99742 * 16 15 5 41 41 H 1.09005 * 109.46948 * 299.99904 * 16 15 5 42 42 H 1.08996 * 109.47091 * 60.00260 * 19 17 16 43 43 H 1.09001 * 109.46977 * 179.97438 * 19 17 16 44 44 H 1.09004 * 109.47271 * 299.99813 * 19 17 16 45 45 H 1.08005 * 119.99629 * 359.97438 * 21 20 17 46 46 H 1.08005 * 120.00358 * 180.23254 * 22 21 20 47 47 H 1.08003 * 120.00070 * 179.83836 * 23 22 21 48 48 H 1.08000 * 119.99966 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00159 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5692 -2.1128 1.2377 6 6 2.3016 -2.9081 0.2432 7 6 1.7233 -2.6571 -1.1256 8 1 0.9262 -1.9394 -1.2516 9 6 2.2119 -3.3436 -2.2168 10 7 3.1829 -4.2172 -2.0634 11 14 1.4956 -3.0319 -3.9137 12 1 1.6825 -1.6037 -4.2751 13 1 2.1882 -3.8896 -4.9086 14 1 0.0462 -3.3550 -3.9061 15 6 1.6734 -2.7148 2.5736 16 6 0.7056 -2.0110 3.5270 17 6 0.8137 -2.6385 4.9183 18 1 1.8510 -2.6077 5.2511 19 6 0.3394 -4.0920 4.8604 20 6 -0.0474 -1.8673 5.8853 21 6 -1.4081 -1.7613 5.6665 22 6 -2.1984 -1.0573 6.5556 23 6 -1.6267 -0.4523 7.6592 24 6 -0.2651 -0.5539 7.8754 25 6 0.5246 -1.2613 6.9883 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6628 -0.2174 2.1391 34 1 3.1299 -0.7065 1.2577 35 1 3.3531 -2.6213 0.2516 36 1 2.2118 -3.9667 0.4871 37 1 3.5264 -4.7005 -2.8311 38 1 2.6927 -2.6042 2.9435 39 1 1.4207 -3.7735 2.5157 40 1 -0.3137 -2.1217 3.1571 41 1 0.9582 -0.9522 3.5849 42 1 0.9621 -4.6497 4.1609 43 1 0.4168 -4.5391 5.8514 44 1 -0.6981 -4.1227 4.5275 45 1 -1.8542 -2.2308 4.8021 46 1 -3.2621 -0.9776 6.3866 47 1 -2.2438 0.1000 8.3525 48 1 0.1816 -0.0810 8.7374 49 1 1.5884 -1.3403 7.1569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774819869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = -10.509583 kcal Electronic energy + Delta-G solvation = -23485.324969 eV Core-core repulsion = 20410.690946 eV Total energy + Delta-G solvation = -3074.634023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46488 -39.26925 -36.71264 -35.10585 -34.38636 -31.73694 -31.19629 -29.69140 -28.33360 -27.79610 -26.68331 -25.00123 -23.66076 -23.16602 -21.96351 -20.76463 -20.45568 -18.39911 -17.71328 -16.83041 -16.55263 -16.26807 -16.18854 -15.52446 -15.41208 -15.04681 -14.67664 -14.50043 -14.25134 -14.09897 -14.04068 -13.85347 -13.59063 -13.18966 -13.10166 -12.98858 -12.85668 -12.68543 -12.57747 -12.37914 -12.33970 -12.07378 -11.86564 -11.78140 -11.64383 -11.48401 -11.43398 -11.30186 -11.08302 -10.81118 -10.47659 -9.75116 -9.52302 -8.92483 -8.11778 -6.17368 0.52629 0.56999 1.42512 1.44890 1.52017 2.44062 2.94060 3.18611 3.33501 3.76165 3.89303 4.12220 4.17731 4.22024 4.26728 4.32348 4.35185 4.45286 4.50883 4.54050 4.62686 4.69601 4.74218 4.74834 4.79864 4.81376 4.94477 5.00313 5.07359 5.10168 5.14375 5.15825 5.19251 5.23065 5.24764 5.25333 5.32372 5.40579 5.42438 5.47471 5.66124 5.68143 5.69476 5.83036 5.84389 5.88342 6.18045 6.20067 6.50020 6.72863 6.97535 7.49160 8.98710 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.003624 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.682081 B = 7725.367323 C = 8300.600082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C -0.137 4.137 4 C 0.076 3.924 5 N -0.534 5.534 6 C 0.209 3.791 7 C -0.505 4.505 8 H 0.085 0.915 9 C -0.003 4.003 10 N -0.941 5.941 11 Si 0.957 3.043 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.056 3.944 16 C -0.087 4.087 17 C -0.046 4.046 18 H 0.077 0.923 19 C -0.141 4.141 20 C -0.080 4.080 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.132 4.132 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.002 0.998 35 H -0.043 1.043 36 H -0.003 1.003 37 H 0.260 0.740 38 H 0.015 0.985 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.121 0.879 46 H 0.136 0.864 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 8.562 18.003 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.128 4.128 3 C -0.194 4.194 4 C -0.052 4.052 5 N -0.258 5.258 6 C 0.082 3.918 7 C -0.543 4.543 8 H 0.103 0.897 9 C -0.200 4.200 10 N -0.582 5.582 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.193 1.193 15 C -0.072 4.072 16 C -0.125 4.125 17 C -0.065 4.065 18 H 0.095 0.905 19 C -0.198 4.198 20 C -0.080 4.080 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.150 4.150 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.020 0.980 35 H -0.025 1.025 36 H 0.015 0.985 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.139 0.861 46 H 0.154 0.846 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.565 8.437 17.772 21.457 hybrid contribution 1.124 -0.483 -0.945 1.546 sum -7.442 7.953 16.828 20.045 Atomic orbital electron populations 1.21540 0.94626 1.01328 1.00261 1.21370 0.96942 0.95490 0.99023 1.21757 1.00232 0.95433 1.02009 1.22054 0.95209 0.89299 0.98601 1.62063 1.56648 1.02223 1.04856 1.19431 0.89701 0.91437 0.91189 1.21756 1.18752 1.22050 0.91748 0.89709 1.25871 0.95693 0.95203 1.03203 1.70093 1.28753 1.27699 1.31704 0.85618 0.78710 0.78339 0.79130 1.19166 1.21469 1.19327 1.22169 0.96958 0.98841 0.89227 1.21502 0.99544 0.98912 0.92559 1.20092 0.98637 0.94753 0.93040 0.90480 1.21848 1.01477 0.94741 1.01769 1.19940 0.94305 0.98020 0.95754 1.21179 0.93582 0.99856 0.99842 1.21414 1.00656 0.97588 0.94842 1.21445 0.95466 1.00110 0.98149 1.21417 0.94246 0.98955 0.99726 1.21303 1.00520 0.98403 0.94779 0.93652 0.93268 0.92688 0.91177 0.93727 0.92280 0.91805 0.90404 0.97961 1.02531 0.98480 0.93139 0.96686 0.92005 0.91593 0.92172 0.92804 0.91998 0.92390 0.86126 0.84603 0.84150 0.84228 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.40 71.98 0.60 -3.51 16 2 C -0.11 -4.08 2.40 -10.80 -0.03 -4.11 16 3 C -0.14 -4.07 9.19 71.98 0.66 -3.40 16 4 C 0.08 2.91 4.27 86.30 0.37 3.28 16 5 N -0.53 -22.71 3.71 -900.80 -3.34 -26.05 16 6 C 0.21 11.13 4.78 85.56 0.41 11.54 16 7 C -0.50 -28.00 7.24 25.60 0.19 -27.81 16 8 H 0.09 4.50 4.58 -2.91 -0.01 4.48 16 9 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 10 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 11 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 C 0.06 2.01 4.68 86.30 0.40 2.41 16 16 C -0.09 -2.48 4.39 30.59 0.13 -2.34 16 17 C -0.05 -1.10 2.56 -11.54 -0.03 -1.13 16 18 H 0.08 1.78 7.88 -2.39 -0.02 1.76 16 19 C -0.14 -3.26 8.76 71.98 0.63 -2.63 16 20 C -0.08 -1.79 4.78 -19.86 -0.09 -1.89 16 21 C -0.13 -2.74 8.76 22.27 0.20 -2.55 16 22 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 23 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 24 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 25 C -0.13 -2.65 9.67 22.27 0.22 -2.44 16 26 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.05 1.93 6.73 -2.39 -0.02 1.91 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 3.21 5.14 -2.39 -0.01 3.19 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.57 5.91 -2.39 -0.01 2.55 16 34 H 0.00 0.09 7.74 -2.39 -0.02 0.07 16 35 H -0.04 -2.53 7.67 -2.39 -0.02 -2.55 16 36 H 0.00 -0.17 7.65 -2.39 -0.02 -0.19 16 37 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 39 H 0.06 2.30 6.22 -2.39 -0.01 2.29 16 40 H 0.07 1.94 7.55 -2.39 -0.02 1.93 16 41 H 0.06 1.70 6.27 -2.38 -0.01 1.69 16 42 H 0.05 1.35 6.56 -2.39 -0.02 1.34 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.32 7.41 -2.39 -0.02 1.30 16 45 H 0.12 2.58 7.16 -2.91 -0.02 2.56 16 46 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 48 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 49 H 0.13 2.23 7.95 -2.91 -0.02 2.21 16 Total: -1.00 -63.32 375.21 4.65 -58.67 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.89 Total: 18.24 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.79 Total: -40.39 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.05 Total: -83.09 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.32 4.65 -58.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774819869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.158 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds