Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47005 * 2 1 4 4 C 1.53002 * 109.47082 * 119.99468 * 2 1 3 5 5 N 1.46904 * 109.47116 * 60.95254 * 4 2 1 6 6 C 1.46904 * 111.00042 * 73.45389 * 5 4 2 7 7 C 1.50705 * 109.47040 * 279.62795 * 6 5 4 8 8 H 1.07995 * 120.00293 * 2.95270 * 7 6 5 9 9 C 1.37874 * 119.99558 * 182.95323 * 7 6 5 10 10 N 1.31515 * 119.99828 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00361 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47399 * 89.99776 * 11 9 7 13 13 H 1.48498 * 109.47044 * 209.99875 * 11 9 7 14 14 H 1.48498 * 109.46980 * 329.99503 * 11 9 7 15 15 C 1.46893 * 111.00242 * 197.40902 * 5 4 2 16 16 C 1.53001 * 109.47115 * 66.04380 * 15 5 4 17 17 C 1.53000 * 109.47311 * 179.97438 * 16 15 5 18 18 H 1.08996 * 109.47070 * 305.00084 * 17 16 15 19 19 C 1.53001 * 109.47095 * 65.00220 * 17 16 15 20 20 C 1.50702 * 109.47285 * 185.00327 * 17 16 15 21 21 C 1.38238 * 119.99829 * 299.72612 * 20 17 16 22 22 C 1.38235 * 120.00034 * 179.78625 * 21 20 17 23 23 C 1.38236 * 119.99661 * 0.44459 * 22 21 20 24 24 C 1.38233 * 120.00030 * 359.81085 * 23 22 21 25 25 C 1.38229 * 120.00182 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47229 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.47345 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47407 * 300.00084 * 1 2 3 29 29 H 1.08995 * 109.47472 * 239.99892 * 2 1 3 30 30 H 1.09003 * 109.47232 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47389 * 299.99628 * 3 2 1 32 32 H 1.08995 * 109.47834 * 59.99586 * 3 2 1 33 33 H 1.09002 * 109.47478 * 300.95492 * 4 2 1 34 34 H 1.09000 * 109.46822 * 180.94978 * 4 2 1 35 35 H 1.08998 * 109.46743 * 39.62722 * 6 5 4 36 36 H 1.08990 * 109.47383 * 159.62535 * 6 5 4 37 37 H 0.96998 * 120.00353 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.47064 * 306.04811 * 15 5 4 39 39 H 1.08999 * 109.47570 * 186.04500 * 15 5 4 40 40 H 1.09001 * 109.46803 * 60.00271 * 16 15 5 41 41 H 1.09003 * 109.47411 * 300.00221 * 16 15 5 42 42 H 1.09001 * 109.46891 * 299.99996 * 19 17 16 43 43 H 1.09003 * 109.46937 * 59.99803 * 19 17 16 44 44 H 1.08991 * 109.47237 * 180.02562 * 19 17 16 45 45 H 1.08000 * 119.99645 * 0.02562 * 21 20 17 46 46 H 1.07995 * 119.99977 * 180.27487 * 22 21 20 47 47 H 1.08002 * 120.00057 * 179.83277 * 23 22 21 48 48 H 1.08005 * 119.99581 * 180.02562 * 24 23 22 49 49 H 1.08001 * 119.99842 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.5692 -2.1127 1.2380 6 6 2.3017 -2.9082 0.2437 7 6 1.7235 -2.6573 -1.1252 8 1 0.9266 -1.9395 -1.2515 9 6 2.2121 -3.3441 -2.2163 10 7 1.7072 -3.1256 -3.4108 11 14 3.5900 -4.5862 -1.9977 12 1 3.0103 -5.9262 -1.7265 13 1 4.4073 -4.6420 -3.2363 14 1 4.4481 -4.1779 -0.8566 15 6 1.6732 -2.7145 2.5739 16 6 0.7054 -2.0106 3.5272 17 6 0.8132 -2.6378 4.9185 18 1 0.6473 -3.7127 4.8463 19 6 2.2077 -2.3743 5.4901 20 6 -0.2249 -2.0292 5.8258 21 6 -0.2127 -0.6697 6.0757 22 6 -1.1676 -0.1107 6.9044 23 6 -2.1290 -0.9127 7.4905 24 6 -2.1378 -2.2730 7.2448 25 6 -1.1857 -2.8313 6.4126 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6627 -0.2173 2.1392 34 1 3.1298 -0.7064 1.2578 35 1 3.3532 -2.6214 0.2522 36 1 2.2119 -3.9667 0.4876 37 1 2.0511 -3.6085 -4.1786 38 1 2.6925 -2.6039 2.9439 39 1 1.4205 -3.7733 2.5162 40 1 -0.3139 -2.1212 3.1572 41 1 0.9580 -0.9518 3.5850 42 1 2.9585 -2.8145 4.8339 43 1 2.3736 -1.2994 5.5623 44 1 2.2847 -2.8215 6.4811 45 1 0.5404 -0.0437 5.6204 46 1 -1.1608 0.9520 7.0961 47 1 -2.8733 -0.4765 8.1401 48 1 -2.8893 -2.8995 7.7024 49 1 -1.1930 -3.8940 6.2203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774819870.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = 6.943926 kcal Electronic energy + Delta-G solvation = -23532.976014 eV Core-core repulsion = 20459.098832 eV Total energy + Delta-G solvation = -3073.877182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.62551 -37.85824 -35.61989 -33.51892 -32.44643 -30.98458 -30.18991 -28.57780 -27.08096 -26.38517 -25.20339 -23.70946 -22.69143 -21.63759 -20.45347 -19.73986 -18.97723 -16.98305 -16.64933 -15.50098 -15.45552 -14.88599 -14.67350 -14.38115 -14.11822 -13.79178 -13.44126 -13.35375 -13.26461 -12.81445 -12.75192 -12.56695 -12.25660 -12.22523 -11.84635 -11.62268 -11.52095 -11.36475 -11.16830 -11.04706 -10.91226 -10.71052 -10.47568 -10.39515 -10.22410 -10.10417 -9.91692 -9.83403 -9.49793 -8.98764 -8.96356 -8.71796 -8.47668 -7.25972 -5.99900 -3.94821 1.30610 1.33382 3.29797 3.37840 3.39670 3.72332 4.45743 4.55917 4.72975 4.82344 4.91823 5.03068 5.10904 5.27757 5.32331 5.39041 5.45730 5.48405 5.52830 5.66555 5.73366 5.83982 5.85324 5.91340 5.96473 6.00543 6.03823 6.06289 6.14641 6.17539 6.28867 6.34308 6.41458 6.43477 6.47720 6.52163 6.55340 6.62858 6.67030 6.74864 6.80645 6.93420 6.94642 7.02327 7.32735 7.49998 7.71351 7.99793 8.14528 8.73275 9.13357 9.62462 11.12042 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.003817 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.484745 B = 7334.696085 C = 8054.982280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.075 3.925 5 N -0.524 5.524 6 C 0.161 3.839 7 C -0.507 4.507 8 H 0.099 0.901 9 C 0.067 3.933 10 N -0.900 5.900 11 Si 0.869 3.131 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.054 3.946 16 C -0.104 4.104 17 C -0.055 4.055 18 H 0.077 0.923 19 C -0.144 4.144 20 C -0.066 4.066 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.116 0.884 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.018 0.982 35 H -0.011 1.011 36 H 0.018 0.982 37 H 0.262 0.738 38 H 0.022 0.978 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 4.523 20.113 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.127 4.127 3 C -0.201 4.201 4 C -0.054 4.054 5 N -0.248 5.248 6 C 0.035 3.965 7 C -0.545 4.545 8 H 0.117 0.883 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.696 3.304 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.195 1.195 15 C -0.075 4.075 16 C -0.142 4.142 17 C -0.074 4.074 18 H 0.096 0.904 19 C -0.201 4.201 20 C -0.066 4.066 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.006 0.994 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.469 4.458 19.779 20.570 hybrid contribution 1.597 -0.746 0.252 1.781 sum -1.872 3.712 20.031 20.458 Atomic orbital electron populations 1.21608 0.95482 1.02628 0.98578 1.21463 0.96320 0.93862 1.01020 1.21828 1.00153 0.97622 1.00453 1.22036 0.95985 0.89692 0.97644 1.61927 1.57385 1.01713 1.03756 1.20248 0.91595 0.92421 0.92270 1.21349 1.20375 1.23978 0.88759 0.88328 1.24913 0.96437 0.96689 0.95347 1.69885 1.42550 1.42657 0.98885 0.86967 0.83187 0.82582 0.77625 1.20353 1.21382 1.19490 1.22138 0.96506 0.98728 0.90089 1.21664 1.01019 0.99509 0.92020 1.20208 0.93138 1.00066 0.93945 0.90425 1.21888 0.95973 1.01766 1.00491 1.19947 0.96131 0.93710 0.96787 1.21028 0.98971 0.94721 0.98416 1.21132 0.95368 0.99651 0.97634 1.21099 0.99113 0.94022 1.00649 1.21115 0.98761 0.95220 0.98744 1.21103 0.95202 0.99759 0.97656 0.94498 0.90699 0.95133 0.86622 0.93667 0.93169 0.94123 0.92774 0.96352 0.99354 0.96415 0.92809 0.95983 0.91505 0.91024 0.91899 0.91912 0.92644 0.92999 0.86155 0.86330 0.86472 0.86348 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.40 37.16 0.31 -2.06 16 2 C -0.11 -2.09 2.40 -90.62 -0.22 -2.30 16 3 C -0.14 -2.30 9.19 37.16 0.34 -1.96 16 4 C 0.07 1.38 4.27 -3.82 -0.02 1.36 16 5 N -0.52 -10.52 3.71 -236.07 -0.87 -11.39 16 6 C 0.16 3.81 3.85 -4.97 -0.02 3.79 16 7 C -0.51 -13.79 7.79 -34.44 -0.27 -14.06 16 8 H 0.10 2.83 4.82 -52.49 -0.25 2.58 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 11 Si 0.87 21.34 27.41 -169.99 -4.66 16.69 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.44 6.63 56.52 0.37 -6.07 16 15 C 0.05 0.89 4.68 -3.83 -0.02 0.87 16 16 C -0.10 -1.45 4.39 -26.73 -0.12 -1.56 16 17 C -0.05 -0.63 2.56 -91.77 -0.24 -0.87 16 18 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 19 C -0.14 -1.54 8.76 37.16 0.33 -1.21 16 20 C -0.07 -0.76 4.78 -104.62 -0.50 -1.26 16 21 C -0.11 -1.26 8.76 -39.58 -0.35 -1.61 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 25 C -0.12 -1.29 9.67 -39.59 -0.38 -1.68 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.60 6.74 -51.93 -0.35 1.25 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.12 2.72 5.14 -51.93 -0.27 2.45 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.89 5.91 -51.93 -0.31 0.58 16 34 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 35 H -0.01 -0.27 6.93 -51.93 -0.36 -0.63 16 36 H 0.02 0.42 6.92 -51.93 -0.36 0.07 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.02 0.35 6.55 -51.93 -0.34 0.01 16 39 H 0.07 1.12 7.80 -51.93 -0.41 0.71 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.87 5.71 -51.93 -0.30 0.57 16 42 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 43 H 0.05 0.57 7.37 -51.93 -0.38 0.19 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.12 1.25 7.16 -52.49 -0.38 0.87 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.12 1.14 7.95 -52.49 -0.42 0.73 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -29.18 371.69 -10.25 -39.43 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.66 Total: 1.56 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -2.43 Total: -25.59 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.10 Total: -37.69 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.66 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.18 -10.25 -39.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774819870.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.370 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds