Wall clock time and date at job start Tue Mar 31 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38602 * 120.42367 * 2 1 4 4 C 1.38673 * 118.43802 * 179.97438 * 3 2 1 5 5 S 1.76198 * 120.40608 * 180.30005 * 4 3 2 6 6 O 1.42094 * 106.40298 * 23.26419 * 5 4 3 7 7 O 1.42104 * 106.40076 * 156.18743 * 5 4 3 8 8 N 1.65601 * 107.21777 * 269.72308 * 5 4 3 9 9 C 1.46501 * 120.00013 * 65.00225 * 8 5 4 10 10 C 1.50701 * 109.47034 * 165.00298 * 9 8 5 11 11 H 1.07994 * 120.00033 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99656 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99691 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00189 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47157 * 90.00286 * 14 12 10 16 16 H 1.48494 * 109.46907 * 210.00215 * 14 12 10 17 17 H 1.48497 * 109.47037 * 330.00066 * 14 12 10 18 18 C 1.38195 * 119.18637 * 0.02716 * 4 3 2 19 19 N 1.31878 * 120.78342 * 359.97438 * 18 4 3 20 20 C 1.31981 * 121.70397 * 359.97438 * 19 18 4 21 21 Cl 1.73603 * 119.62877 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.47200 * 269.95559 * 1 2 3 23 23 H 1.08998 * 109.47003 * 29.95133 * 1 2 3 24 24 H 1.08999 * 109.47245 * 149.95137 * 1 2 3 25 25 H 1.08002 * 120.78417 * 0.04810 * 3 2 1 26 26 H 0.96998 * 119.99730 * 245.00325 * 8 5 4 27 27 H 1.09007 * 109.46831 * 284.99787 * 9 8 5 28 28 H 1.08994 * 109.47020 * 44.99585 * 9 8 5 29 29 H 0.97009 * 120.00029 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.60551 * 180.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1952 0.0000 4 6 3.5948 1.1471 0.0005 5 16 4.5387 2.6349 0.0085 6 8 3.6959 3.6419 0.5515 7 8 5.8064 2.3029 0.5580 8 7 4.8086 3.0527 -1.5710 9 6 3.6835 3.4214 -2.4338 10 6 4.2034 4.0999 -3.6749 11 1 5.2657 4.2426 -3.8075 12 6 3.3229 4.5395 -4.6405 13 7 3.7766 5.1320 -5.7233 14 14 1.4854 4.2933 -4.4107 15 1 0.9128 5.4688 -3.7069 16 1 0.8360 4.1463 -5.7379 17 1 1.2471 3.0691 -3.6046 18 6 4.2265 -0.0820 0.0005 19 7 3.5273 -1.2002 0.0004 20 6 2.2075 -1.1930 0.0009 21 17 1.3411 -2.6974 0.0015 22 1 -0.3633 -0.0008 1.0276 23 1 -0.3633 0.8904 -0.5131 24 1 -0.3634 -0.8895 -0.5146 25 1 1.6887 2.1417 0.0008 26 1 5.7117 3.0532 -1.9250 27 1 3.1315 2.5242 -2.7143 28 1 3.0222 4.1019 -1.8974 29 1 3.1571 5.4410 -6.4029 30 1 5.3055 -0.1273 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785282645.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:43 Heat of formation + Delta-G solvation = -49.598205 kcal Electronic energy + Delta-G solvation = -18703.203565 eV Core-core repulsion = 15458.436265 eV Total energy + Delta-G solvation = -3244.767300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57773 -37.05968 -37.03150 -35.65697 -34.92598 -34.07808 -32.34163 -32.22889 -27.71948 -27.51188 -24.32021 -23.03630 -22.16060 -19.30887 -17.95682 -17.78227 -17.37390 -16.95109 -16.24679 -15.63890 -15.09565 -14.58958 -14.31493 -13.68410 -13.58824 -13.38147 -13.19127 -13.07370 -12.68083 -12.56862 -12.19347 -12.14637 -11.90991 -11.80675 -11.64114 -11.18255 -11.00049 -10.75057 -10.28437 -10.09933 -9.94361 -9.63752 -9.32210 -9.03127 -8.64973 -6.28184 -4.30483 0.15906 0.63732 0.80455 1.41564 3.02152 3.15216 3.20188 3.22803 3.41985 3.92607 4.06505 4.20337 4.21874 4.40981 4.60695 4.84224 5.01545 5.04936 5.22174 5.29969 5.51708 5.63447 5.71828 5.99923 6.08380 6.67763 6.76183 7.25213 7.26227 7.66783 8.26552 8.73364 9.28899 10.84129 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.006066 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.483813 B = 4615.051698 C = 5695.156154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 C 0.038 3.962 4 C -0.723 4.723 5 S 2.697 3.303 6 O -0.954 6.954 7 O -0.965 6.965 8 N -1.091 6.091 9 C 0.216 3.784 10 C -0.533 4.533 11 H 0.084 0.916 12 C 0.076 3.924 13 N -0.889 5.889 14 Si 0.871 3.129 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.214 3.786 19 N -0.488 5.488 20 C 0.215 3.785 21 Cl -0.021 7.021 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.163 0.837 26 H 0.419 0.581 27 H 0.018 0.982 28 H 0.033 0.967 29 H 0.268 0.732 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 -11.536 11.267 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.145 4.145 3 C 0.011 3.989 4 C -0.808 4.808 5 S 2.781 3.219 6 O -0.944 6.944 7 O -0.955 6.955 8 N -0.854 5.854 9 C 0.091 3.909 10 C -0.572 4.572 11 H 0.102 0.898 12 C -0.128 4.128 13 N -0.526 5.526 14 Si 0.697 3.303 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.189 1.189 18 C 0.055 3.945 19 N -0.199 5.199 20 C 0.052 3.948 21 Cl 0.008 6.992 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.181 0.819 26 H 0.255 0.745 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.663 -11.989 11.893 17.811 hybrid contribution -1.418 -0.128 -0.606 1.548 sum -7.081 -12.117 11.287 18.010 Atomic orbital electron populations 1.20875 0.88523 1.04455 1.03545 1.20668 0.98623 0.91784 1.03376 1.21353 0.91797 0.99040 0.86671 1.32450 1.08453 1.22461 1.17433 1.01927 0.73208 0.73384 0.73397 1.93582 1.69326 1.54251 1.77235 1.93567 1.39846 1.84850 1.77270 1.55237 1.17496 1.82609 1.30070 1.19500 0.84671 0.95399 0.91297 1.21007 0.96190 1.38940 1.01092 0.89780 1.24854 0.98948 0.94232 0.94783 1.69867 1.35367 1.38578 1.08807 0.86922 0.85595 0.79517 0.78231 1.19464 1.20700 1.18873 1.22477 1.00418 0.84804 0.86827 1.67142 1.06397 1.31929 1.14391 1.21854 0.90171 0.87433 0.95376 1.98408 1.73401 1.31532 1.95904 0.89970 0.90053 0.90271 0.81912 0.74514 0.96424 0.94908 0.92163 0.79944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.63 36.01 0.35 -0.73 16 2 C -0.14 -1.76 5.90 -104.45 -0.62 -2.38 16 3 C 0.04 0.52 9.33 -39.29 -0.37 0.15 16 4 C -0.72 -10.51 5.96 -39.44 -0.24 -10.75 16 5 S 2.70 43.61 5.75 -107.50 -0.62 42.99 16 6 O -0.95 -17.64 16.82 -57.17 -0.96 -18.60 16 7 O -0.97 -16.39 17.31 -57.17 -0.99 -17.38 16 8 N -1.09 -19.58 5.99 -11.65 -0.07 -19.65 16 9 C 0.22 4.64 5.04 -5.19 -0.03 4.62 16 10 C -0.53 -13.87 9.83 -34.44 -0.34 -14.20 16 11 H 0.08 2.32 7.90 -52.49 -0.41 1.91 16 12 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.89 -25.56 13.96 55.43 0.77 -24.78 16 14 Si 0.87 19.66 27.47 -169.99 -4.67 14.99 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 18 C 0.21 2.98 10.68 -17.55 -0.19 2.79 16 19 N -0.49 -7.09 10.34 -10.36 -0.11 -7.19 16 20 C 0.22 2.88 7.27 -17.45 -0.13 2.76 16 21 Cl -0.02 -0.24 27.46 -51.86 -1.42 -1.66 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.08 0.67 6.92 -51.93 -0.36 0.31 16 25 H 0.16 1.99 7.71 -52.49 -0.40 1.59 16 26 H 0.42 6.99 8.54 -34.47 -0.29 6.69 16 27 H 0.02 0.37 7.20 -51.92 -0.37 0.00 16 28 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.18 2.13 7.63 -52.49 -0.40 1.73 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -31.50 292.60 -7.93 -39.43 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -2.63 Total: 3.23 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -1.65 Total: -15.79 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.60 Total: -51.62 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.95 Total: -35.98 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Atomic # 16 Polarization: 43.61 SS G_CDS: -0.62 Total: 42.99 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.42 Total: -1.66 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.50 -7.93 -39.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785282645.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.164 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds