Wall clock time and date at job start Tue Mar 31 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38602 * 120.42367 * 2 1 4 4 C 1.38673 * 118.43802 * 179.97438 * 3 2 1 5 5 S 1.76198 * 120.40608 * 180.30005 * 4 3 2 6 6 O 1.42094 * 106.40298 * 23.26419 * 5 4 3 7 7 O 1.42104 * 106.40076 * 156.18743 * 5 4 3 8 8 N 1.65601 * 107.21777 * 269.72308 * 5 4 3 9 9 C 1.46501 * 120.00013 * 65.00225 * 8 5 4 10 10 C 1.50701 * 109.47034 * 165.00298 * 9 8 5 11 11 H 1.07994 * 120.00033 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99656 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99691 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00189 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47157 * 90.00286 * 14 12 10 16 16 H 1.48494 * 109.46907 * 210.00215 * 14 12 10 17 17 H 1.48497 * 109.47037 * 330.00066 * 14 12 10 18 18 C 1.38195 * 119.18637 * 0.02716 * 4 3 2 19 19 N 1.31878 * 120.78342 * 359.97438 * 18 4 3 20 20 C 1.31981 * 121.70397 * 359.97438 * 19 18 4 21 21 Cl 1.73603 * 119.62877 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.47200 * 269.95559 * 1 2 3 23 23 H 1.08998 * 109.47003 * 29.95133 * 1 2 3 24 24 H 1.08999 * 109.47245 * 149.95137 * 1 2 3 25 25 H 1.08002 * 120.78417 * 0.04810 * 3 2 1 26 26 H 0.96998 * 119.99730 * 245.00325 * 8 5 4 27 27 H 1.09007 * 109.46831 * 284.99787 * 9 8 5 28 28 H 1.08994 * 109.47020 * 44.99585 * 9 8 5 29 29 H 0.97009 * 120.00029 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.60551 * 180.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1952 0.0000 4 6 3.5948 1.1471 0.0005 5 16 4.5387 2.6349 0.0085 6 8 3.6959 3.6419 0.5515 7 8 5.8064 2.3029 0.5580 8 7 4.8086 3.0527 -1.5710 9 6 3.6835 3.4214 -2.4338 10 6 4.2034 4.0999 -3.6749 11 1 5.2657 4.2426 -3.8075 12 6 3.3229 4.5395 -4.6405 13 7 3.7766 5.1320 -5.7233 14 14 1.4854 4.2933 -4.4107 15 1 0.9128 5.4688 -3.7069 16 1 0.8360 4.1463 -5.7379 17 1 1.2471 3.0691 -3.6046 18 6 4.2265 -0.0820 0.0005 19 7 3.5273 -1.2002 0.0004 20 6 2.2075 -1.1930 0.0009 21 17 1.3411 -2.6974 0.0015 22 1 -0.3633 -0.0008 1.0276 23 1 -0.3633 0.8904 -0.5131 24 1 -0.3634 -0.8895 -0.5146 25 1 1.6887 2.1417 0.0008 26 1 5.7117 3.0532 -1.9250 27 1 3.1315 2.5242 -2.7143 28 1 3.0222 4.1019 -1.8974 29 1 3.1571 5.4410 -6.4029 30 1 5.3055 -0.1273 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785282645.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:43 Heat of formation + Delta-G solvation = -73.782732 kcal Electronic energy + Delta-G solvation = -18704.252285 eV Core-core repulsion = 15458.436265 eV Total energy + Delta-G solvation = -3245.816020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.58681 -38.42179 -37.96703 -37.03365 -36.56885 -35.01365 -34.25052 -33.28484 -29.35730 -28.55971 -25.36834 -24.14550 -23.87893 -20.67434 -19.42375 -18.94903 -18.43366 -18.20776 -17.86382 -17.15865 -16.21911 -16.08036 -15.29442 -15.22423 -14.83157 -14.59689 -14.50011 -14.29250 -13.90360 -13.76677 -13.44321 -13.28848 -13.20144 -13.10653 -12.74771 -12.64910 -12.44107 -12.15187 -11.86557 -11.62873 -11.32513 -11.01526 -10.87016 -10.35211 -10.23568 -8.31947 -6.39509 -0.93223 -0.63017 -0.19840 0.45818 1.39156 1.41481 1.49663 1.88326 2.18807 2.34227 2.64839 3.02453 3.07411 3.12911 3.46697 3.60527 3.77256 4.12440 4.21389 4.38447 4.51802 4.69344 4.86015 4.93504 4.98832 5.05006 5.22473 5.40519 6.15319 6.22867 6.24494 6.67603 7.24132 8.83614 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.006066 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.483813 B = 4615.051698 C = 5695.156154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.136 4.136 3 C 0.026 3.974 4 C -0.727 4.727 5 S 2.721 3.279 6 O -0.976 6.976 7 O -0.974 6.974 8 N -1.097 6.097 9 C 0.221 3.779 10 C -0.542 4.542 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.940 5.940 14 Si 0.931 3.069 15 H -0.262 1.262 16 H -0.282 1.282 17 H -0.231 1.231 18 C 0.206 3.794 19 N -0.504 5.504 20 C 0.203 3.797 21 Cl -0.003 7.003 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.177 0.823 26 H 0.422 0.578 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.270 0.730 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 -12.897 12.474 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C -0.001 4.001 4 C -0.815 4.815 5 S 2.808 3.192 6 O -0.966 6.966 7 O -0.965 6.965 8 N -0.859 5.859 9 C 0.095 3.905 10 C -0.581 4.581 11 H 0.068 0.932 12 C -0.185 4.185 13 N -0.580 5.580 14 Si 0.753 3.247 15 H -0.187 1.187 16 H -0.208 1.208 17 H -0.154 1.154 18 C 0.047 3.953 19 N -0.215 5.215 20 C 0.040 3.960 21 Cl 0.026 6.974 22 H 0.120 0.880 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.195 0.805 26 H 0.258 0.742 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.832 -13.340 13.119 20.283 hybrid contribution -0.680 0.211 -0.939 1.179 sum -8.512 -13.130 12.180 19.829 Atomic orbital electron populations 1.21027 0.86064 1.05422 1.05083 1.21005 1.00320 0.90881 1.01804 1.21664 0.91516 1.00246 0.86626 1.32072 1.08893 1.21302 1.19269 1.01013 0.72735 0.73273 0.72174 1.93548 1.69753 1.55934 1.77394 1.93552 1.40751 1.85119 1.77029 1.55164 1.17026 1.83354 1.30319 1.19301 0.85597 0.95668 0.89884 1.21333 0.94936 1.38832 1.02984 0.93188 1.25822 1.04428 0.93910 0.94329 1.70024 1.37305 1.40487 1.10153 0.85948 0.78982 0.81049 0.78690 1.18677 1.20751 1.15369 1.22757 1.01274 0.84589 0.86639 1.67189 1.07217 1.32082 1.15009 1.22211 0.90130 0.88679 0.95016 1.98412 1.72829 1.30419 1.95721 0.88037 0.88896 0.89508 0.80546 0.74193 0.94748 0.94286 0.92130 0.78504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.63 71.24 0.69 -1.05 16 2 C -0.14 -2.99 5.90 -19.75 -0.12 -3.11 16 3 C 0.03 0.64 9.33 22.46 0.21 0.85 16 4 C -0.73 -19.76 5.96 22.36 0.13 -19.62 16 5 S 2.72 84.54 5.75 -56.49 -0.32 84.22 16 6 O -0.98 -34.66 16.82 -128.00 -2.15 -36.81 16 7 O -0.97 -32.12 17.31 -128.00 -2.22 -34.33 16 8 N -1.10 -38.56 5.99 -190.78 -1.14 -39.70 16 9 C 0.22 9.20 5.04 85.63 0.43 9.63 16 10 C -0.54 -28.42 9.83 25.60 0.25 -28.17 16 11 H 0.05 2.87 7.90 -2.91 -0.02 2.85 16 12 C 0.01 0.78 5.47 84.66 0.46 1.24 16 13 N -0.94 -55.32 13.96 21.45 0.30 -55.02 16 14 Si 0.93 39.20 27.47 68.60 1.88 41.08 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.23 -8.41 6.54 99.48 0.65 -7.76 16 18 C 0.21 5.42 10.68 84.68 0.90 6.32 16 19 N -0.50 -13.70 10.34 -186.69 -1.93 -15.63 16 20 C 0.20 4.94 7.27 84.70 0.62 5.56 16 21 Cl 0.00 -0.05 27.46 -2.72 -0.07 -0.13 16 22 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 24 H 0.09 1.15 6.92 -2.39 -0.02 1.13 16 25 H 0.18 3.76 7.71 -2.91 -0.02 3.74 16 26 H 0.42 14.14 8.54 -96.75 -0.83 13.32 16 27 H 0.03 1.34 7.20 -2.38 -0.02 1.32 16 28 H 0.04 1.60 7.18 -2.39 -0.02 1.58 16 29 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 30 H 0.20 4.33 7.63 -2.91 -0.02 4.31 16 Total: -1.00 -67.22 292.60 -1.77 -68.99 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.31 Total: 15.70 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 3.58 Total: -28.36 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -2.77 Total: -110.35 kcal Atomic # 8 Polarization: -66.78 SS G_CDS: -4.37 Total: -71.15 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.88 Total: 41.08 kcal Atomic # 16 Polarization: 84.54 SS G_CDS: -0.32 Total: 84.22 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.07 Total: -0.13 kcal Total: -67.22 -1.77 -68.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785282645.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.793 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds