Wall clock time and date at job start Tue Mar 31 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38184 * 119.60992 * 2 1 4 4 C 1.38671 * 119.19221 * 179.77787 * 3 2 1 5 5 C 1.38610 * 118.43317 * 0.48905 * 4 3 2 6 6 S 1.76203 * 120.42331 * 179.72980 * 5 4 3 7 7 O 1.42097 * 106.40114 * 228.56604 * 6 5 4 8 8 O 1.42105 * 106.40145 * 1.48530 * 6 5 4 9 9 N 1.65597 * 107.21862 * 115.02491 * 6 5 4 10 10 C 1.46504 * 120.00003 * 65.00140 * 9 6 5 11 11 C 1.50695 * 109.47340 * 165.00276 * 10 9 6 12 12 H 1.08003 * 119.99932 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00033 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00144 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00050 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47225 * 59.99548 * 15 13 11 17 17 H 1.48494 * 109.47549 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47078 * 300.00107 * 15 13 11 19 19 C 1.38349 * 119.15480 * 359.75608 * 5 4 3 20 20 Cl 1.73594 * 119.63676 * 179.97438 * 19 5 4 21 21 N 1.31873 * 119.60639 * 180.27792 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72059 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71657 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72288 * 1 2 3 25 25 H 1.08004 * 120.40444 * 0.02562 * 3 2 1 26 26 H 1.07996 * 120.78111 * 180.22649 * 4 3 2 27 27 H 0.97002 * 120.00043 * 245.00608 * 9 6 5 28 28 H 1.09003 * 109.46589 * 284.99953 * 10 9 6 29 29 H 1.08998 * 109.46708 * 44.99817 * 10 9 6 30 30 H 0.96999 * 119.99889 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5765 1.1913 0.0047 5 6 4.2276 -0.0324 -0.0012 6 16 5.9880 -0.1064 -0.0028 7 8 6.3503 -1.0200 -1.0291 8 8 6.4462 1.2382 0.0381 9 7 6.4508 -0.8018 1.4271 10 6 6.0969 -2.1945 1.7126 11 6 6.9235 -2.6959 2.8686 12 1 7.6410 -2.0427 3.3429 13 6 6.7645 -3.9889 3.3200 14 7 5.8912 -4.7845 2.7421 15 14 7.7896 -4.6107 4.7525 16 1 7.5220 -3.7766 5.9516 17 1 7.4318 -6.0227 5.0412 18 1 9.2305 -4.5273 4.4031 19 6 3.4775 -1.1949 -0.0063 20 17 4.2800 -2.7342 -0.0143 21 7 2.1586 -1.1465 -0.0056 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6500 2.1369 0.0004 26 1 4.1359 2.1150 0.0085 27 1 6.9560 -0.2870 2.0757 28 1 5.0392 -2.2553 1.9689 29 1 6.2935 -2.8069 0.8327 30 1 5.7791 -5.6941 3.0600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788681408.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:46 Heat of formation + Delta-G solvation = -35.597376 kcal Electronic energy + Delta-G solvation = -19068.342885 eV Core-core repulsion = 15824.182706 eV Total energy + Delta-G solvation = -3244.160179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33390 -36.97968 -36.39754 -35.40974 -34.65442 -33.30788 -32.32877 -32.15341 -28.06805 -26.77991 -23.81164 -22.84366 -22.54516 -19.23441 -18.02038 -17.51684 -16.87512 -16.14168 -15.94732 -15.47024 -14.88480 -14.55260 -14.46912 -13.70516 -13.54340 -13.17897 -12.85861 -12.61773 -12.47343 -12.44013 -11.88708 -11.69175 -11.57071 -11.14448 -11.05437 -10.91253 -10.87245 -10.63485 -10.21556 -10.01005 -9.67840 -9.28801 -9.02868 -8.68715 -8.18991 -6.15995 -4.21055 0.43330 0.88135 1.00428 1.96122 3.27010 3.27371 3.32247 3.34236 3.62055 4.04212 4.20063 4.34549 4.42966 4.57949 4.99849 5.03679 5.17938 5.20639 5.33025 5.37948 5.62306 5.70698 5.78017 6.30464 6.39622 7.25547 7.30262 7.56334 7.75705 7.79779 8.16742 8.81349 9.43230 10.93337 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.006368 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.932763 B = 4396.187665 C = 5124.484590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.187 3.813 3 C -0.203 4.203 4 C 0.034 3.966 5 C -0.726 4.726 6 S 2.692 3.308 7 O -0.945 6.945 8 O -0.976 6.976 9 N -1.097 6.097 10 C 0.236 3.764 11 C -0.533 4.533 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.260 3.740 20 Cl 0.048 6.952 21 N -0.492 5.492 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.148 0.852 26 H 0.161 0.839 27 H 0.413 0.587 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 10.723 -4.640 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.050 3.950 3 C -0.223 4.223 4 C 0.008 3.992 5 C -0.812 4.812 6 S 2.776 3.224 7 O -0.935 6.935 8 O -0.966 6.966 9 N -0.861 5.861 10 C 0.114 3.886 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.094 3.906 20 Cl 0.077 6.923 21 N -0.205 5.205 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.165 0.835 26 H 0.178 0.822 27 H 0.248 0.752 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.303 9.773 -5.456 14.554 hybrid contribution 0.432 0.278 1.429 1.519 sum -8.872 10.051 -4.026 13.998 Atomic orbital electron populations 1.20867 0.87832 1.04105 1.03896 1.21573 0.97284 0.87665 0.88520 1.22051 0.94899 0.99593 1.05778 1.21378 0.94703 0.96500 0.86633 1.32015 1.30590 0.98274 1.20292 1.02025 0.72934 0.73054 0.74372 1.93614 1.80270 1.64064 1.55567 1.93518 1.79347 1.36502 1.87268 1.55434 1.68889 1.24085 1.37648 1.19831 0.96644 0.74406 0.97741 1.21197 1.22483 0.97862 1.15735 0.91685 1.24940 0.95442 0.96457 0.97152 1.69916 1.33990 1.07411 1.40996 0.86493 0.80533 0.77800 0.82193 1.20170 1.21130 1.20066 1.21810 0.89837 0.89461 0.89490 1.98634 1.72347 1.26979 1.94334 1.67180 1.08199 1.29834 1.15289 0.89410 0.90016 0.89733 0.83458 0.82172 0.75241 0.95073 0.93798 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.17 36.01 0.37 -0.59 16 2 C 0.19 2.49 6.78 -82.59 -0.56 1.93 16 3 C -0.20 -2.37 9.74 -39.44 -0.38 -2.75 16 4 C 0.03 0.47 9.66 -39.28 -0.38 0.09 16 5 C -0.73 -12.66 5.91 -39.40 -0.23 -12.89 16 6 S 2.69 50.99 5.44 -107.50 -0.58 50.41 16 7 O -0.95 -20.41 15.99 -57.17 -0.91 -21.32 16 8 O -0.98 -18.31 17.05 -57.17 -0.97 -19.28 16 9 N -1.10 -22.35 5.99 -11.66 -0.07 -22.42 16 10 C 0.24 5.80 3.87 -5.19 -0.02 5.78 16 11 C -0.53 -14.14 9.27 -34.44 -0.32 -14.46 16 12 H 0.07 1.64 7.65 -52.48 -0.40 1.24 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 15 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.26 4.94 7.07 -17.44 -0.12 4.82 16 20 Cl 0.05 1.02 20.81 -51.86 -1.08 -0.06 16 21 N -0.49 -8.51 10.25 -6.62 -0.07 -8.58 16 22 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 26 H 0.16 1.81 7.44 -52.49 -0.39 1.42 16 27 H 0.41 7.52 8.54 -34.47 -0.29 7.23 16 28 H 0.03 0.79 6.15 -51.93 -0.32 0.47 16 29 H 0.04 1.16 5.92 -51.93 -0.31 0.85 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -32.29 284.02 -7.98 -40.27 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -2.53 Total: 1.50 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.75 Total: -16.45 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.60 Total: -55.00 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.89 Total: -40.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -0.58 Total: 50.41 kcal Atomic # 17 Polarization: 1.02 SS G_CDS: -1.08 Total: -0.06 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.29 -7.98 -40.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788681408.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.670 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds