Wall clock time and date at job start Tue Mar 31 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38184 * 119.60992 * 2 1 4 4 C 1.38671 * 119.19221 * 179.77787 * 3 2 1 5 5 C 1.38610 * 118.43317 * 0.48905 * 4 3 2 6 6 S 1.76203 * 120.42331 * 179.72980 * 5 4 3 7 7 O 1.42097 * 106.40114 * 228.56604 * 6 5 4 8 8 O 1.42105 * 106.40145 * 1.48530 * 6 5 4 9 9 N 1.65597 * 107.21862 * 115.02491 * 6 5 4 10 10 C 1.46504 * 120.00003 * 65.00140 * 9 6 5 11 11 C 1.50695 * 109.47340 * 165.00276 * 10 9 6 12 12 H 1.08003 * 119.99932 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00033 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00144 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00050 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47225 * 59.99548 * 15 13 11 17 17 H 1.48494 * 109.47549 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47078 * 300.00107 * 15 13 11 19 19 C 1.38349 * 119.15480 * 359.75608 * 5 4 3 20 20 Cl 1.73594 * 119.63676 * 179.97438 * 19 5 4 21 21 N 1.31873 * 119.60639 * 180.27792 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72059 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71657 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72288 * 1 2 3 25 25 H 1.08004 * 120.40444 * 0.02562 * 3 2 1 26 26 H 1.07996 * 120.78111 * 180.22649 * 4 3 2 27 27 H 0.97002 * 120.00043 * 245.00608 * 9 6 5 28 28 H 1.09003 * 109.46589 * 284.99953 * 10 9 6 29 29 H 1.08998 * 109.46708 * 44.99817 * 10 9 6 30 30 H 0.96999 * 119.99889 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5765 1.1913 0.0047 5 6 4.2276 -0.0324 -0.0012 6 16 5.9880 -0.1064 -0.0028 7 8 6.3503 -1.0200 -1.0291 8 8 6.4462 1.2382 0.0381 9 7 6.4508 -0.8018 1.4271 10 6 6.0969 -2.1945 1.7126 11 6 6.9235 -2.6959 2.8686 12 1 7.6410 -2.0427 3.3429 13 6 6.7645 -3.9889 3.3200 14 7 5.8912 -4.7845 2.7421 15 14 7.7896 -4.6107 4.7525 16 1 7.5220 -3.7766 5.9516 17 1 7.4318 -6.0227 5.0412 18 1 9.2305 -4.5273 4.4031 19 6 3.4775 -1.1949 -0.0063 20 17 4.2800 -2.7342 -0.0143 21 7 2.1586 -1.1465 -0.0056 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6500 2.1369 0.0004 26 1 4.1359 2.1150 0.0085 27 1 6.9560 -0.2870 2.0757 28 1 5.0392 -2.2553 1.9689 29 1 6.2935 -2.8069 0.8327 30 1 5.7791 -5.6941 3.0600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788681408.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:45 Heat of formation + Delta-G solvation = -61.102649 kcal Electronic energy + Delta-G solvation = -19069.448877 eV Core-core repulsion = 15824.182706 eV Total energy + Delta-G solvation = -3245.266170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.49144 -38.50690 -37.88447 -36.99346 -36.45677 -34.41090 -34.11922 -33.41275 -29.02416 -28.73224 -24.99968 -24.61310 -23.79140 -20.72950 -19.59454 -18.96249 -18.28588 -17.69567 -17.34520 -17.09931 -16.46998 -15.94297 -15.60897 -15.27503 -14.75599 -14.71337 -14.29461 -13.85996 -13.78157 -13.60932 -13.30523 -13.18624 -13.10401 -12.74451 -12.67558 -12.53664 -12.42965 -12.35845 -11.91099 -11.37159 -11.02447 -10.84761 -10.77989 -10.24877 -9.96879 -8.18920 -6.31382 -0.80957 -0.56663 -0.12728 0.58575 1.45425 1.47634 1.55144 1.96669 2.24826 2.43842 2.58760 3.12680 3.15811 3.20371 3.55043 3.78499 3.99901 4.13193 4.53537 4.62179 4.62978 4.73011 4.80808 5.04248 5.31196 5.34594 5.39251 5.77110 6.00405 6.31501 6.41920 6.80433 7.36737 8.89963 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.006368 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.932763 B = 4396.187665 C = 5124.484590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.178 3.822 3 C -0.177 4.177 4 C 0.028 3.972 5 C -0.738 4.738 6 S 2.709 3.291 7 O -0.979 6.979 8 O -0.973 6.973 9 N -1.100 6.100 10 C 0.249 3.751 11 C -0.555 4.555 12 H 0.073 0.927 13 C 0.012 3.988 14 N -0.916 5.916 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.237 3.763 20 Cl 0.004 6.996 21 N -0.519 5.519 22 H 0.102 0.898 23 H 0.121 0.879 24 H 0.077 0.923 25 H 0.204 0.796 26 H 0.189 0.811 27 H 0.420 0.580 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 13.292 -3.976 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.041 3.959 3 C -0.197 4.197 4 C 0.002 3.998 5 C -0.827 4.827 6 S 2.796 3.204 7 O -0.969 6.969 8 O -0.963 6.963 9 N -0.863 5.863 10 C 0.125 3.875 11 C -0.594 4.594 12 H 0.091 0.909 13 C -0.188 4.188 14 N -0.554 5.554 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.071 3.929 20 Cl 0.033 6.967 21 N -0.233 5.233 22 H 0.120 0.880 23 H 0.139 0.861 24 H 0.096 0.904 25 H 0.221 0.779 26 H 0.206 0.794 27 H 0.257 0.743 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.702 12.368 -4.786 17.041 hybrid contribution 0.680 -0.352 1.159 1.389 sum -10.022 12.016 -3.627 16.062 Atomic orbital electron populations 1.21065 0.84346 1.05800 1.05209 1.22518 0.99477 0.87100 0.86767 1.22672 0.93956 1.01151 1.01923 1.21878 0.96164 0.95826 0.85888 1.31648 1.28931 0.99471 1.22668 1.01255 0.73440 0.72442 0.73213 1.93570 1.81623 1.65084 1.56593 1.93511 1.79970 1.35817 1.87045 1.55280 1.69764 1.22965 1.38271 1.19438 0.95800 0.75978 0.96314 1.21651 1.22870 0.98439 1.16461 0.90902 1.25812 0.96540 0.96737 0.99751 1.70055 1.35385 1.07605 1.42380 0.85454 0.78917 0.77171 0.79143 1.19133 1.21000 1.19555 1.21693 0.90864 0.88226 0.92079 1.98609 1.73557 1.29591 1.94897 1.67143 1.07425 1.32358 1.16326 0.87964 0.86069 0.90363 0.77875 0.79401 0.74344 0.96018 0.95944 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.17 71.24 0.72 -0.71 16 2 C 0.18 4.18 6.78 42.54 0.29 4.47 16 3 C -0.18 -3.31 9.74 22.36 0.22 -3.09 16 4 C 0.03 0.70 9.66 22.46 0.22 0.91 16 5 C -0.74 -25.29 5.91 22.39 0.13 -25.16 16 6 S 2.71 103.45 5.44 -56.49 -0.31 103.15 16 7 O -0.98 -43.81 15.99 -128.00 -2.05 -45.85 16 8 O -0.97 -35.46 17.05 -128.00 -2.18 -37.64 16 9 N -1.10 -45.74 5.99 -190.79 -1.14 -46.88 16 10 C 0.25 12.64 3.87 85.63 0.33 12.97 16 11 C -0.55 -29.95 9.27 25.60 0.24 -29.71 16 12 H 0.07 3.69 7.65 -2.91 -0.02 3.67 16 13 C 0.01 0.67 5.46 84.65 0.46 1.14 16 14 N -0.92 -52.60 13.29 21.45 0.28 -52.32 16 15 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C 0.24 9.15 7.07 84.70 0.60 9.75 16 20 Cl 0.00 0.20 20.81 -2.72 -0.06 0.14 16 21 N -0.52 -17.65 10.25 -174.85 -1.79 -19.45 16 22 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.12 0.70 8.07 -2.39 -0.02 0.68 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 26 H 0.19 3.49 7.44 -2.91 -0.02 3.47 16 27 H 0.42 15.48 8.54 -96.74 -0.83 14.65 16 28 H 0.02 1.16 6.15 -2.39 -0.01 1.14 16 29 H 0.02 1.26 5.92 -2.39 -0.01 1.25 16 30 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -72.64 284.02 -1.64 -74.28 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.37 Total: 9.33 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 3.21 Total: -29.43 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -2.65 Total: -118.65 kcal Atomic # 8 Polarization: -79.26 SS G_CDS: -4.23 Total: -83.49 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 103.45 SS G_CDS: -0.31 Total: 103.15 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -0.06 Total: 0.14 kcal Total: -72.64 -1.64 -74.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788681408.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.179 kcal (2) G-P(sol) polarization free energy of solvation -72.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds