Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47231 * 299.99673 * 3 2 1 6 6 H 1.48500 * 109.47391 * 59.99612 * 3 2 1 7 7 C 1.38743 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00229 * 180.02562 * 7 2 1 9 9 O 1.34927 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.34309 * 117.00190 * 179.97438 * 9 7 2 11 11 O 1.21209 * 119.99853 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00282 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.35929 * 116.99444 * 180.02562 * 13 12 10 15 15 C 1.38684 * 120.05440 * 0.02562 * 14 13 12 16 16 C 1.38268 * 119.94284 * 179.97438 * 15 14 13 17 17 Cl 1.73603 * 119.97346 * 179.97438 * 16 15 14 18 18 C 1.38389 * 120.05196 * 0.02562 * 16 15 14 19 19 C 1.38234 * 120.10444 * 359.97438 * 18 16 15 20 20 C 1.38252 * 120.05685 * 0.02562 * 19 18 16 21 21 Cl 1.73601 * 120.02839 * 180.27690 * 20 19 18 22 22 H 0.96997 * 120.00238 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47219 * 59.99909 * 12 10 9 24 24 H 1.09004 * 109.47112 * 299.99789 * 12 10 9 25 25 H 1.07995 * 120.03151 * 359.95769 * 15 14 13 26 26 H 1.08000 * 119.94822 * 180.02562 * 18 16 15 27 27 H 1.08001 * 119.97155 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3966 1.2124 7 6 2.0083 -1.2015 0.0005 8 1 3.0882 -1.2015 0.0010 9 8 1.3337 -2.3700 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3811 -4.8392 0.0011 13 8 2.3654 -5.8752 0.0016 14 6 1.9123 -7.1568 0.0016 15 6 0.5490 -7.4114 0.0007 16 6 0.0906 -8.7159 0.0001 17 17 -1.6157 -9.0356 -0.0004 18 6 0.9910 -9.7669 0.0011 19 6 2.3503 -9.5154 0.0021 20 6 2.8134 -8.2128 0.0026 21 17 4.5206 -7.8977 -0.0034 22 1 -0.4850 0.8400 -0.0004 23 1 0.7580 -4.9299 -0.8886 24 1 0.7587 -4.9295 0.8914 25 1 -0.1540 -6.5916 0.0006 26 1 0.6311 -10.7851 0.0003 27 1 3.0510 -10.3372 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798092244.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -100.290370 kcal Electronic energy + Delta-G solvation = -17616.619857 eV Core-core repulsion = 14199.484827 eV Total energy + Delta-G solvation = -3417.135029 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48710 -39.05765 -37.77828 -36.82470 -36.20237 -35.15171 -32.24773 -30.98981 -30.53938 -28.42441 -25.26932 -23.15864 -22.71439 -20.37839 -18.71768 -17.79084 -16.94125 -16.56643 -16.28766 -16.14122 -15.30755 -14.69339 -14.54166 -14.38108 -14.25895 -13.52474 -13.34587 -12.57524 -12.52636 -12.38346 -11.73393 -11.57598 -11.54665 -11.24130 -11.17350 -10.88192 -10.86812 -10.46546 -10.44604 -9.91654 -9.13359 -9.12452 -8.66660 -8.39384 -6.49841 -4.18411 0.67051 0.95896 1.75088 2.09455 2.68726 3.02975 3.17274 3.18933 3.25303 3.36706 3.94700 4.34115 4.52686 4.65712 4.72120 5.00942 5.03908 5.19661 5.28299 5.38100 5.52912 5.76052 5.82885 6.13829 6.44638 7.11761 7.31831 7.84880 8.58423 8.98627 9.69511 10.67797 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.003907 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.181639 B = 7165.567842 C = 8553.604068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.382 4.382 8 H 0.099 0.901 9 O -0.209 6.209 10 C 0.398 3.602 11 O -0.530 6.530 12 C 0.074 3.926 13 O -0.271 6.271 14 C 0.162 3.838 15 C -0.196 4.196 16 C 0.010 3.990 17 Cl -0.060 7.060 18 C -0.144 4.144 19 C -0.060 4.060 20 C -0.069 4.069 21 Cl -0.043 7.043 22 H 0.271 0.729 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.152 0.848 26 H 0.143 0.857 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -19.072 -0.002 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.161 4.161 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.458 4.458 8 H 0.117 0.883 9 O -0.116 6.116 10 C 0.242 3.758 11 O -0.425 6.425 12 C -0.002 4.002 13 O -0.183 6.183 14 C 0.114 3.886 15 C -0.215 4.215 16 C -0.017 4.017 17 Cl -0.031 7.031 18 C -0.163 4.163 19 C -0.079 4.079 20 C -0.096 4.096 21 Cl -0.014 7.014 22 H 0.080 0.920 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.170 0.830 26 H 0.160 0.840 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.719 -18.779 -0.002 18.793 hybrid contribution 0.045 0.810 0.000 0.811 sum -0.675 -17.970 -0.003 17.982 Atomic orbital electron populations 1.69996 1.06013 1.27825 1.46188 1.25362 0.95888 0.98869 0.95998 0.85567 0.79500 0.79726 0.78194 1.18831 1.20067 1.20071 1.21320 0.92565 0.79207 1.52678 0.88324 1.83828 1.39049 1.12947 1.75802 1.22261 0.86741 0.86383 0.80373 1.90625 1.15167 1.87574 1.49167 1.21930 0.89761 0.84188 1.04328 1.86256 1.34286 1.10739 1.86985 1.18591 0.90814 0.84699 0.94487 1.21191 0.94314 0.97234 1.08777 1.20695 0.85500 0.93907 1.01603 1.98392 1.12233 1.95798 1.96643 1.20870 0.91584 0.98936 1.04876 1.20834 0.95398 0.94290 0.97409 1.20295 0.86059 0.92480 1.10804 1.98401 1.10099 1.96057 1.96850 0.91953 0.88490 0.88495 0.83030 0.83954 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 13.67 55.48 0.76 -23.96 15 2 C 0.04 1.19 5.49 -17.53 -0.10 1.10 15 3 Si 0.95 20.98 29.55 -169.99 -5.02 15.95 15 4 H -0.26 -5.80 7.11 56.52 0.40 -5.40 15 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 15 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.38 -11.11 9.64 30.92 0.30 -10.81 15 8 H 0.10 2.91 6.86 -52.49 -0.36 2.55 15 9 O -0.21 -5.81 9.75 -20.72 -0.20 -6.01 15 10 C 0.40 9.70 7.98 36.00 0.29 9.99 15 11 O -0.53 -14.54 15.74 -25.78 -0.41 -14.94 15 12 C 0.07 1.31 5.33 36.00 0.19 1.50 15 13 O -0.27 -4.83 9.13 -39.43 -0.36 -5.19 15 14 C 0.16 2.34 6.68 -39.20 -0.26 2.07 15 15 C -0.20 -2.40 8.82 -39.41 -0.35 -2.74 15 16 C 0.01 0.11 6.32 -39.51 -0.25 -0.14 15 17 Cl -0.06 -0.59 28.95 -51.86 -1.50 -2.09 15 18 C -0.14 -1.31 9.83 -39.53 -0.39 -1.70 15 19 C -0.06 -0.59 9.82 -39.58 -0.39 -0.97 15 20 C -0.07 -0.89 6.33 -39.36 -0.25 -1.14 15 21 Cl -0.04 -0.60 28.50 -51.86 -1.48 -2.08 15 22 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 23 H 0.10 1.46 7.66 -51.93 -0.40 1.06 15 24 H 0.10 1.46 7.66 -51.93 -0.40 1.06 15 25 H 0.15 1.72 6.30 -52.49 -0.33 1.38 15 26 H 0.14 0.94 8.06 -52.49 -0.42 0.51 15 27 H 0.15 1.03 8.06 -52.49 -0.42 0.60 15 LS Contribution 285.76 15.07 4.31 4.31 Total: -1.00 -32.77 285.76 -6.58 -39.35 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -1.47 Total: -2.48 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.20 Total: -2.85 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.76 Total: -23.96 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.97 Total: -26.14 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -2.98 Total: -4.17 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.77 -6.58 -39.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798092244.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.942 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds