Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47231 * 299.99673 * 3 2 1 6 6 H 1.48500 * 109.47391 * 59.99612 * 3 2 1 7 7 C 1.38743 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00229 * 180.02562 * 7 2 1 9 9 O 1.34927 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.34309 * 117.00190 * 179.97438 * 9 7 2 11 11 O 1.21209 * 119.99853 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00282 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.35929 * 116.99444 * 180.02562 * 13 12 10 15 15 C 1.38684 * 120.05440 * 0.02562 * 14 13 12 16 16 C 1.38268 * 119.94284 * 179.97438 * 15 14 13 17 17 Cl 1.73603 * 119.97346 * 179.97438 * 16 15 14 18 18 C 1.38389 * 120.05196 * 0.02562 * 16 15 14 19 19 C 1.38234 * 120.10444 * 359.97438 * 18 16 15 20 20 C 1.38252 * 120.05685 * 0.02562 * 19 18 16 21 21 Cl 1.73601 * 120.02839 * 180.27690 * 20 19 18 22 22 H 0.96997 * 120.00238 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47219 * 59.99909 * 12 10 9 24 24 H 1.09004 * 109.47112 * 299.99789 * 12 10 9 25 25 H 1.07995 * 120.03151 * 359.95769 * 15 14 13 26 26 H 1.08000 * 119.94822 * 180.02562 * 18 16 15 27 27 H 1.08001 * 119.97155 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3966 1.2124 7 6 2.0083 -1.2015 0.0005 8 1 3.0882 -1.2015 0.0010 9 8 1.3337 -2.3700 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3811 -4.8392 0.0011 13 8 2.3654 -5.8752 0.0016 14 6 1.9123 -7.1568 0.0016 15 6 0.5490 -7.4114 0.0007 16 6 0.0906 -8.7159 0.0001 17 17 -1.6157 -9.0356 -0.0004 18 6 0.9910 -9.7669 0.0011 19 6 2.3503 -9.5154 0.0021 20 6 2.8134 -8.2128 0.0026 21 17 4.5206 -7.8977 -0.0034 22 1 -0.4850 0.8400 -0.0004 23 1 0.7580 -4.9299 -0.8886 24 1 0.7587 -4.9295 0.8914 25 1 -0.1540 -6.5916 0.0006 26 1 0.6311 -10.7851 0.0003 27 1 3.0510 -10.3372 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798092244.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -119.681765 kcal Electronic energy + Delta-G solvation = -17617.460731 eV Core-core repulsion = 14199.484827 eV Total energy + Delta-G solvation = -3417.975903 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68357 -40.85843 -38.92619 -37.75827 -37.27100 -37.05053 -34.37053 -31.88643 -31.63833 -29.82087 -27.28148 -24.21929 -23.68139 -22.11737 -20.06286 -19.68717 -18.55864 -17.72500 -17.69067 -17.34294 -16.49868 -16.26472 -16.21535 -16.12307 -15.16749 -14.81046 -14.64741 -13.95015 -13.63136 -13.54054 -13.34327 -13.22961 -12.74614 -12.60747 -12.36498 -12.20391 -12.04783 -12.04100 -11.89284 -11.77592 -11.13849 -10.74142 -10.00932 -9.37860 -8.59279 -6.39694 -0.21576 0.07133 0.89899 1.09353 1.21428 1.28494 1.43389 1.54333 1.58101 2.20378 2.31379 2.81722 2.91894 3.56266 3.65101 3.90865 3.99138 3.99276 4.15437 4.40362 4.56399 4.64517 4.93926 5.01760 5.11601 5.34907 5.76466 5.95156 6.55041 6.85663 7.62539 8.61027 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.003907 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.181639 B = 7165.567842 C = 8553.604068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.000 4.000 3 Si 1.018 2.982 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.422 4.422 8 H 0.082 0.918 9 O -0.233 6.233 10 C 0.396 3.604 11 O -0.567 6.567 12 C 0.089 3.911 13 O -0.301 6.301 14 C 0.133 3.867 15 C -0.197 4.197 16 C 0.005 3.995 17 Cl -0.050 7.050 18 C -0.126 4.126 19 C -0.049 4.049 20 C -0.082 4.082 21 Cl -0.061 7.061 22 H 0.281 0.719 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.157 0.843 26 H 0.177 0.823 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 -20.419 -0.002 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.201 4.201 3 Si 0.837 3.163 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.100 0.900 9 O -0.141 6.141 10 C 0.242 3.758 11 O -0.464 6.464 12 C 0.013 3.987 13 O -0.214 6.214 14 C 0.087 3.913 15 C -0.217 4.217 16 C -0.022 4.022 17 Cl -0.021 7.021 18 C -0.144 4.144 19 C -0.068 4.068 20 C -0.110 4.110 21 Cl -0.032 7.032 22 H 0.091 0.909 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.175 0.825 26 H 0.194 0.806 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.573 -20.164 -0.003 20.226 hybrid contribution 0.246 1.005 0.000 1.035 sum -1.327 -19.159 -0.003 19.205 Atomic orbital electron populations 1.70059 1.07506 1.29573 1.46296 1.26521 0.96941 1.02138 0.94454 0.84562 0.77717 0.74645 0.79392 1.19059 1.18249 1.18261 1.21466 0.92251 0.80638 1.55365 0.90021 1.83841 1.39777 1.13704 1.76775 1.23557 0.86635 0.87828 0.77734 1.90586 1.17085 1.88331 1.50387 1.21863 0.89092 0.80820 1.06912 1.86185 1.34864 1.12101 1.88300 1.18801 0.92087 0.83354 0.97092 1.21246 0.93443 0.98344 1.08632 1.20844 0.86308 0.93749 1.01319 1.98402 1.11498 1.95656 1.96556 1.21287 0.90915 1.00111 1.02119 1.21204 0.96305 0.93624 0.95626 1.20612 0.85088 0.93487 1.11789 1.98392 1.11549 1.96261 1.97009 0.90944 0.85729 0.85739 0.82516 0.80593 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.72 13.67 21.62 0.30 -51.42 15 2 C 0.00 0.02 5.49 84.87 0.47 0.49 15 3 Si 1.02 42.91 29.55 68.60 2.03 44.93 15 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 7 C -0.42 -25.38 9.64 67.94 0.66 -24.73 15 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 15 9 O -0.23 -13.39 9.75 14.82 0.14 -13.24 15 10 C 0.40 19.92 7.98 71.24 0.57 20.49 15 11 O -0.57 -32.43 15.74 27.21 0.43 -32.00 15 12 C 0.09 3.13 5.33 71.24 0.38 3.51 15 13 O -0.30 -10.83 9.13 -73.70 -0.67 -11.50 15 14 C 0.13 3.73 6.68 22.52 0.15 3.88 15 15 C -0.20 -4.50 8.82 22.38 0.20 -4.30 15 16 C 0.00 0.09 6.32 22.31 0.14 0.23 15 17 Cl -0.05 -0.86 28.95 -2.72 -0.08 -0.94 15 18 C -0.13 -1.83 9.83 22.30 0.22 -1.61 15 19 C -0.05 -0.80 9.82 22.27 0.22 -0.59 15 20 C -0.08 -2.03 6.33 22.41 0.14 -1.89 15 21 Cl -0.06 -1.68 28.50 -2.72 -0.08 -1.76 15 22 H 0.28 14.60 8.31 -92.71 -0.77 13.83 15 23 H 0.13 3.67 7.66 -2.39 -0.02 3.65 15 24 H 0.13 3.67 7.66 -2.39 -0.02 3.65 15 25 H 0.16 3.29 6.30 -2.91 -0.02 3.27 15 26 H 0.18 1.42 8.06 -2.91 -0.02 1.39 15 27 H 0.18 1.79 8.06 -2.91 -0.02 1.76 15 Total: -1.00 -73.62 285.76 6.43 -67.19 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.23 Total: 3.26 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 3.14 Total: -4.51 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.30 Total: -51.42 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -0.10 Total: -56.74 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.16 Total: -2.70 kcal Total: -73.62 6.43 -67.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798092244.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.496 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds