Wall clock time and date at job start Tue Mar 31 2020 06:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00122 * 2 1 4 4 H 1.48500 * 109.46758 * 270.00111 * 3 2 1 5 5 H 1.48500 * 109.46806 * 30.00083 * 3 2 1 6 6 H 1.48498 * 109.47087 * 150.00241 * 3 2 1 7 7 C 1.38805 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99503 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00307 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99960 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47460 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.34916 * 117.00039 * 179.97438 * 13 12 11 15 15 O 1.21648 * 119.99947 * 0.02562 * 14 13 12 16 16 C 1.46322 * 120.00079 * 180.02562 * 14 13 12 17 17 C 1.36711 * 125.98727 * 180.02562 * 16 14 13 18 18 C 1.40195 * 106.73406 * 179.97438 * 17 16 14 19 19 C 1.35414 * 107.12987 * 0.02562 * 18 17 16 20 20 Cl 1.73592 * 125.62438 * 179.97438 * 19 18 17 21 21 O 1.33934 * 108.74707 * 359.97438 * 19 18 17 22 22 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47667 * 59.99808 * 10 9 7 24 24 H 1.09008 * 109.47141 * 299.99832 * 10 9 7 25 25 H 1.09001 * 109.46835 * 59.99352 * 11 10 9 26 26 H 1.09008 * 109.46891 * 300.00038 * 11 10 9 27 27 H 1.08997 * 109.46968 * 59.99971 * 12 11 10 28 28 H 1.08997 * 109.46928 * 300.00254 * 12 11 10 29 29 H 1.08002 * 126.63864 * 0.25787 * 17 16 14 30 30 H 1.08003 * 126.43561 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5958 -3.2363 0.0008 12 6 5.8615 -4.7430 0.0012 13 8 7.2710 -4.9782 0.0005 14 6 7.6774 -6.2647 0.0013 15 8 6.8560 -7.1620 0.0021 16 6 9.1061 -6.5807 0.0012 17 6 9.6516 -7.8342 0.0015 18 6 11.0437 -7.6687 0.0007 19 6 11.2870 -6.3366 0.0005 20 17 12.8567 -5.5953 0.0003 21 8 10.1166 -5.6853 0.0007 22 1 -0.4850 0.8400 0.0004 23 1 3.6441 -3.4314 -0.8893 24 1 3.6434 -3.4318 0.8907 25 1 6.0387 -2.7893 0.8908 26 1 6.0387 -2.7891 -0.8892 27 1 5.4185 -5.1903 -0.8885 28 1 5.4186 -5.1898 0.8914 29 1 9.1141 -8.7710 -0.0021 30 1 11.7833 -8.4558 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805370484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:56 Heat of formation + Delta-G solvation = -81.267424 kcal Electronic energy + Delta-G solvation = -17119.837482 eV Core-core repulsion = 13841.404151 eV Total energy + Delta-G solvation = -3278.433332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.33581 -40.59601 -37.64027 -37.14522 -33.88333 -33.64420 -32.46897 -30.58858 -26.95143 -25.67274 -24.09520 -22.58428 -21.54478 -21.10554 -19.09877 -17.74125 -17.40482 -17.37356 -16.87456 -16.52914 -15.03014 -14.74430 -14.67399 -14.10080 -14.00033 -13.69670 -13.38293 -13.07956 -12.85848 -12.70406 -12.55056 -11.99661 -11.59421 -11.30653 -11.24461 -11.12559 -11.01531 -10.73606 -10.42819 -10.31428 -9.84098 -9.22066 -9.03635 -8.62958 -6.99766 -6.31143 -4.04659 0.22632 0.47919 1.54277 2.05755 2.43470 2.82815 3.04130 3.28431 3.43339 3.54008 4.13071 4.28612 4.38259 4.72887 4.76180 4.86631 4.96866 5.03980 5.07757 5.14212 5.32239 5.53508 5.63021 5.64062 5.94482 6.05569 6.17392 6.29584 6.51527 7.34401 7.92437 8.41624 9.14230 10.78226 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.002516 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.120186 B =11127.387754 C =11991.759437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.069 3.931 13 O -0.337 6.337 14 C 0.551 3.449 15 O -0.479 6.479 16 C -0.041 4.041 17 C -0.099 4.099 18 C -0.188 4.188 19 C 0.060 3.940 20 Cl 0.042 6.958 21 O -0.140 6.140 22 H 0.271 0.729 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.176 0.824 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.121 -15.318 0.081 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C -0.006 4.006 13 O -0.252 6.252 14 C 0.395 3.605 15 O -0.368 6.368 16 C -0.091 4.091 17 C -0.119 4.119 18 C -0.208 4.208 19 C -0.019 4.019 20 Cl 0.071 6.929 21 O -0.036 6.036 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.193 0.807 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 25.454 -14.167 0.084 29.131 hybrid contribution -0.662 -0.242 -0.034 0.705 sum 24.793 -14.409 0.050 28.676 Atomic orbital electron populations 1.69931 1.05919 1.27781 1.48049 1.24792 0.94519 0.99033 0.93288 0.86675 0.81748 0.83205 0.79755 1.19314 1.20033 1.16131 1.22119 0.86927 0.97516 1.58668 0.89274 1.84189 1.11844 1.04211 1.97557 1.22947 0.95816 1.00182 1.04311 1.21350 0.96093 0.91902 1.04614 1.23002 0.75891 0.98527 1.03160 1.86217 1.29324 1.26674 1.83031 1.19027 0.85544 0.82104 0.73830 1.90992 1.51981 1.47870 1.45938 1.20851 0.85530 0.87770 1.14980 1.22002 0.93362 0.97520 0.99033 1.21577 0.96614 0.94032 1.08556 1.23011 0.82599 0.89709 1.06598 1.98473 1.13634 1.84126 1.96690 1.84115 1.12904 1.36402 1.70143 0.91906 0.90930 0.90883 0.90115 0.90119 0.90708 0.90694 0.80652 0.80956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.37 27.74 -169.99 -4.72 16.65 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 7 C -0.50 -14.51 10.04 30.94 0.31 -14.20 16 8 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 9 S -0.21 -4.94 19.41 -107.50 -2.09 -7.03 16 10 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 11 C -0.10 -1.53 5.59 -26.73 -0.15 -1.68 16 12 C 0.07 0.93 5.38 37.16 0.20 1.13 16 13 O -0.34 -4.58 10.12 -42.56 -0.43 -5.01 16 14 C 0.55 7.05 7.91 33.98 0.27 7.32 16 15 O -0.48 -6.83 16.64 -19.38 -0.32 -7.15 16 16 C -0.04 -0.44 7.18 -36.89 -0.26 -0.70 16 17 C -0.10 -0.80 10.62 -39.40 -0.42 -1.22 16 18 C -0.19 -1.25 10.84 -39.85 -0.43 -1.68 16 19 C 0.06 0.50 7.93 29.72 0.24 0.74 16 20 Cl 0.04 0.28 29.30 -51.86 -1.52 -1.23 16 21 O -0.14 -1.52 10.67 4.43 0.05 -1.47 16 22 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 24 H 0.07 1.36 8.14 -51.91 -0.42 0.93 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 27 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -31.63 306.74 -6.72 -38.35 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -2.96 Total: -2.85 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.13 Total: -9.08 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.78 Total: -25.80 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.71 Total: -13.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.72 Total: 16.65 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.09 Total: -7.03 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.63 -6.72 -38.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805370484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.915 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds