Wall clock time and date at job start Tue Mar 31 2020 06:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00122 * 2 1 4 4 H 1.48500 * 109.46758 * 270.00111 * 3 2 1 5 5 H 1.48500 * 109.46806 * 30.00083 * 3 2 1 6 6 H 1.48498 * 109.47087 * 150.00241 * 3 2 1 7 7 C 1.38805 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99503 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00307 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99960 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47460 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.34916 * 117.00039 * 179.97438 * 13 12 11 15 15 O 1.21648 * 119.99947 * 0.02562 * 14 13 12 16 16 C 1.46322 * 120.00079 * 180.02562 * 14 13 12 17 17 C 1.36711 * 125.98727 * 180.02562 * 16 14 13 18 18 C 1.40195 * 106.73406 * 179.97438 * 17 16 14 19 19 C 1.35414 * 107.12987 * 0.02562 * 18 17 16 20 20 Cl 1.73592 * 125.62438 * 179.97438 * 19 18 17 21 21 O 1.33934 * 108.74707 * 359.97438 * 19 18 17 22 22 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47667 * 59.99808 * 10 9 7 24 24 H 1.09008 * 109.47141 * 299.99832 * 10 9 7 25 25 H 1.09001 * 109.46835 * 59.99352 * 11 10 9 26 26 H 1.09008 * 109.46891 * 300.00038 * 11 10 9 27 27 H 1.08997 * 109.46968 * 59.99971 * 12 11 10 28 28 H 1.08997 * 109.46928 * 300.00254 * 12 11 10 29 29 H 1.08002 * 126.63864 * 0.25787 * 17 16 14 30 30 H 1.08003 * 126.43561 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5958 -3.2363 0.0008 12 6 5.8615 -4.7430 0.0012 13 8 7.2710 -4.9782 0.0005 14 6 7.6774 -6.2647 0.0013 15 8 6.8560 -7.1620 0.0021 16 6 9.1061 -6.5807 0.0012 17 6 9.6516 -7.8342 0.0015 18 6 11.0437 -7.6687 0.0007 19 6 11.2870 -6.3366 0.0005 20 17 12.8567 -5.5953 0.0003 21 8 10.1166 -5.6853 0.0007 22 1 -0.4850 0.8400 0.0004 23 1 3.6441 -3.4314 -0.8893 24 1 3.6434 -3.4318 0.8907 25 1 6.0387 -2.7893 0.8908 26 1 6.0387 -2.7891 -0.8892 27 1 5.4185 -5.1903 -0.8885 28 1 5.4186 -5.1898 0.8914 29 1 9.1141 -8.7710 -0.0021 30 1 11.7833 -8.4558 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805370484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:56 Heat of formation + Delta-G solvation = -99.654471 kcal Electronic energy + Delta-G solvation = -17120.634805 eV Core-core repulsion = 13841.404151 eV Total energy + Delta-G solvation = -3279.230654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.01619 -41.59709 -38.23784 -38.15436 -35.00021 -34.68920 -34.47649 -31.33511 -28.30451 -27.73561 -25.02266 -23.22229 -22.82289 -21.92225 -19.97649 -19.52825 -18.55273 -18.28316 -17.74497 -17.43590 -17.11067 -16.21152 -15.97745 -15.03786 -14.89863 -14.67180 -14.40448 -14.28001 -14.25878 -14.03022 -13.39412 -13.30977 -13.06362 -12.66778 -12.58147 -12.49516 -12.41340 -12.04647 -11.74316 -11.57890 -11.33969 -11.17162 -10.60940 -9.88224 -9.01597 -8.52536 -6.24748 -0.53894 -0.12491 0.91401 1.00213 1.25592 1.32464 1.48102 1.60270 1.72657 2.18994 2.24361 2.65646 2.85531 3.52073 3.58036 3.80237 3.88469 4.07408 4.09384 4.21781 4.27079 4.41951 4.62492 4.67551 4.95635 4.96700 5.01489 5.22010 5.39498 5.69121 6.10063 6.37589 6.91187 8.60443 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.002516 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.120186 B =11127.387754 C =11991.759437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.228 1.228 7 C -0.524 4.524 8 H 0.053 0.947 9 S -0.210 6.210 10 C -0.073 4.073 11 C -0.089 4.089 12 C 0.075 3.925 13 O -0.345 6.345 14 C 0.553 3.447 15 O -0.501 6.501 16 C -0.075 4.075 17 C -0.079 4.079 18 C -0.174 4.174 19 C 0.052 3.948 20 Cl 0.054 6.946 21 O -0.162 6.162 22 H 0.277 0.723 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.196 0.804 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.802 -15.896 0.105 32.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.151 1.151 7 C -0.672 4.672 8 H 0.071 0.929 9 S 0.018 5.982 10 C -0.221 4.221 11 C -0.128 4.128 12 C 0.000 4.000 13 O -0.261 6.261 14 C 0.399 3.601 15 O -0.391 6.391 16 C -0.125 4.125 17 C -0.099 4.099 18 C -0.193 4.193 19 C -0.027 4.027 20 Cl 0.083 6.917 21 O -0.060 6.060 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.213 0.787 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 28.147 -14.756 0.109 31.781 hybrid contribution -1.396 -0.220 -0.046 1.414 sum 26.751 -14.975 0.063 30.658 Atomic orbital electron populations 1.70033 1.07666 1.29159 1.49096 1.25784 0.95426 1.02815 0.92725 0.85717 0.80794 0.78605 0.80257 1.18570 1.18774 1.15095 1.22343 0.89976 0.96371 1.58469 0.92901 1.83862 1.07622 1.09103 1.97602 1.22964 0.98583 0.96072 1.04499 1.21167 0.93150 0.93416 1.05029 1.22811 0.76385 0.97081 1.03758 1.86193 1.28964 1.27607 1.83331 1.19280 0.86432 0.81353 0.73039 1.90971 1.52822 1.48057 1.47297 1.20709 0.84727 0.88759 1.18333 1.22389 0.94035 0.97183 0.96256 1.22005 0.96558 0.94052 1.06685 1.23445 0.82464 0.90507 1.06240 1.98480 1.12550 1.84131 1.96578 1.84067 1.13667 1.37218 1.71030 0.91362 0.90792 0.90749 0.89726 0.89705 0.90193 0.90179 0.78720 0.77481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.69 13.97 21.65 0.30 -56.39 16 2 C 0.04 2.19 5.50 84.86 0.47 2.65 16 3 Si 0.93 43.85 27.74 68.60 1.90 45.76 16 4 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.23 -10.35 6.74 99.48 0.67 -9.68 16 7 C -0.52 -30.71 10.04 67.96 0.68 -30.03 16 8 H 0.05 3.36 8.03 -2.91 -0.02 3.34 16 9 S -0.21 -9.96 19.41 -56.49 -1.10 -11.05 16 10 C -0.07 -2.69 5.67 71.98 0.41 -2.28 16 11 C -0.09 -2.59 5.59 30.59 0.17 -2.41 16 12 C 0.08 1.94 5.38 71.98 0.39 2.33 16 13 O -0.34 -9.12 10.12 -56.90 -0.58 -9.70 16 14 C 0.55 13.80 7.91 69.92 0.55 14.35 16 15 O -0.50 -13.96 16.64 19.35 0.32 -13.64 16 16 C -0.08 -1.54 7.18 24.02 0.17 -1.37 16 17 C -0.08 -1.08 10.62 22.39 0.24 -0.84 16 18 C -0.17 -1.77 10.84 22.09 0.24 -1.54 16 19 C 0.05 0.77 7.93 67.17 0.53 1.30 16 20 Cl 0.05 0.63 29.30 -2.72 -0.08 0.55 16 21 O -0.16 -3.38 10.67 -5.84 -0.06 -3.44 16 22 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 24 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.08 2.41 8.14 -2.38 -0.02 2.40 16 27 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 28 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 29 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.21 0.56 8.06 -2.91 -0.02 0.53 16 Total: -1.00 -68.81 306.74 5.69 -63.12 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.13 Total: 2.62 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 3.85 Total: -17.83 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.30 Total: -56.39 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.32 Total: -26.77 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.90 Total: 45.76 kcal Atomic # 16 Polarization: -9.96 SS G_CDS: -1.10 Total: -11.05 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -0.08 Total: 0.55 kcal Total: -68.81 5.69 -63.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805370484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.531 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds