Wall clock time and date at job start Tue Mar 31 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99812 * 2 1 4 4 H 1.48501 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47452 * 299.99977 * 3 2 1 6 6 H 1.48508 * 109.47377 * 59.99963 * 3 2 1 7 7 C 1.38796 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99613 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99765 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46686 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46910 * 180.02562 * 11 10 9 13 13 O 1.45193 * 109.47235 * 180.02562 * 12 11 10 14 14 C 1.34802 * 117.00164 * 179.97438 * 13 12 11 15 15 O 1.21560 * 119.99623 * 359.97438 * 14 13 12 16 16 C 1.47053 * 119.99875 * 180.02562 * 14 13 12 17 17 C 1.47121 * 127.21918 * 359.97438 * 16 14 13 18 18 C 1.34094 * 105.97036 * 179.97438 * 17 16 14 19 19 O 1.34295 * 109.19958 * 359.97438 * 18 17 16 20 20 C 1.33660 * 110.93134 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 125.83321 * 180.25814 * 20 19 18 22 22 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46638 * 60.00531 * 10 9 7 24 24 H 1.08998 * 109.47179 * 300.00033 * 10 9 7 25 25 H 1.09005 * 109.47351 * 60.00658 * 11 10 9 26 26 H 1.08998 * 109.47493 * 300.00029 * 11 10 9 27 27 H 1.08998 * 109.47368 * 59.99949 * 12 11 10 28 28 H 1.08998 * 109.46925 * 300.00204 * 12 11 10 29 29 H 1.07995 * 127.01192 * 0.02562 * 17 16 14 30 30 H 1.07999 * 125.39961 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3242 0.0012 12 6 3.1515 -6.3077 0.0018 13 8 2.6423 -7.6674 0.0018 14 6 3.5526 -8.6617 0.0018 15 8 4.7395 -8.3991 0.0014 16 6 3.1096 -10.0640 0.0013 17 6 1.7244 -10.5597 0.0012 18 6 1.8114 -11.8978 0.0000 19 8 3.1056 -12.2562 -0.0012 20 6 3.8990 -11.1806 -0.0003 21 17 5.6349 -11.1981 -0.0076 22 1 -0.4850 0.8400 0.0004 23 1 3.1244 -3.7313 0.8906 24 1 3.1245 -3.7313 -0.8894 25 1 1.3706 -5.4846 -0.8887 26 1 1.3710 -5.4840 0.8914 27 1 3.7600 -6.1472 0.8918 28 1 3.7602 -6.1480 -0.8881 29 1 0.8218 -9.9668 0.0011 30 1 0.9735 -12.5792 -0.0008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805539049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:11 Heat of formation + Delta-G solvation = -82.218202 kcal Electronic energy + Delta-G solvation = -17193.384897 eV Core-core repulsion = 13914.910337 eV Total energy + Delta-G solvation = -3278.474561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.11683 -40.21681 -37.51334 -36.65987 -33.78017 -33.24271 -32.44958 -30.14213 -26.92074 -25.55441 -24.20738 -22.22417 -21.32941 -20.64567 -18.87356 -17.53733 -17.22644 -17.08689 -16.46510 -16.41577 -15.22716 -14.82546 -14.59448 -14.36001 -13.82701 -13.40996 -13.31490 -12.84960 -12.68782 -12.55877 -12.10615 -11.73008 -11.35935 -11.15714 -11.00369 -10.91111 -10.74549 -10.61265 -10.42812 -10.27922 -9.63970 -9.19011 -9.09103 -8.36143 -6.57190 -6.25641 -3.96554 0.56318 0.57948 1.50291 2.42520 2.75461 2.94129 3.20226 3.21980 3.29420 3.53479 4.13590 4.19249 4.39318 4.74650 4.99396 5.09876 5.12480 5.16871 5.19606 5.38722 5.48447 5.69796 5.77102 5.88459 6.13992 6.23818 6.38293 6.44347 6.66108 7.58869 7.64080 8.34524 9.21032 10.82620 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.041962 B = 0.002466 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.102312 B =11351.250628 C =11992.599814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.097 4.097 12 C 0.074 3.926 13 O -0.345 6.345 14 C 0.534 3.466 15 O -0.497 6.497 16 C -0.193 4.193 17 C -0.158 4.158 18 C -0.024 4.024 19 O -0.164 6.164 20 C 0.105 3.895 21 Cl 0.063 6.937 22 H 0.267 0.733 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.176 0.824 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -25.204 -0.004 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.665 4.665 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.262 6.262 14 C 0.378 3.622 15 O -0.386 6.386 16 C -0.197 4.197 17 C -0.177 4.177 18 C -0.090 4.090 19 O -0.061 6.061 20 C 0.026 3.974 21 Cl 0.092 6.908 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.193 0.807 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.091 -25.434 -0.007 25.761 hybrid contribution 2.023 1.463 0.001 2.496 sum 6.114 -23.972 -0.005 24.739 Atomic orbital electron populations 1.70024 1.05931 1.27313 1.47247 1.25020 0.95098 0.99143 0.94535 0.86095 0.79669 0.81751 0.77904 1.19566 1.20544 1.20538 1.22738 0.94629 0.90644 1.58528 0.90777 1.84649 1.08815 0.99274 1.96879 1.23181 1.03441 0.96288 1.03397 1.21287 0.96420 0.91528 1.04349 1.23324 0.97876 0.76073 1.02810 1.86531 1.39267 1.16769 1.83625 1.19679 0.84069 0.85029 0.73434 1.90908 1.17451 1.84700 1.45533 1.20137 0.93566 0.90500 1.15478 1.23003 0.96372 0.94196 1.04151 1.24085 0.82238 0.96586 1.06053 1.83764 1.17374 1.33571 1.71417 1.22663 0.86859 0.84905 1.03004 1.98504 0.98195 1.97901 1.96160 0.92298 0.91690 0.91683 0.90302 0.90307 0.90945 0.90954 0.80705 0.76154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.72 9.50 30.94 0.29 -14.43 16 8 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 9 S -0.12 -3.21 21.44 -107.50 -2.30 -5.51 16 10 C -0.11 -2.27 5.67 37.16 0.21 -2.05 16 11 C -0.10 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C 0.07 1.07 5.48 37.16 0.20 1.27 16 13 O -0.35 -4.86 10.13 -40.77 -0.41 -5.27 16 14 C 0.53 7.41 7.95 34.30 0.27 7.69 16 15 O -0.50 -7.83 15.45 -19.31 -0.30 -8.13 16 16 C -0.19 -2.19 6.32 -103.26 -0.65 -2.85 16 17 C -0.16 -1.28 11.05 -37.44 -0.41 -1.70 16 18 C -0.02 -0.15 12.02 29.27 0.35 0.21 16 19 O -0.16 -1.40 10.52 7.42 0.08 -1.32 16 20 C 0.10 1.10 7.99 30.19 0.24 1.34 16 21 Cl 0.06 0.65 27.91 -51.86 -1.45 -0.80 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 24 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.22 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -32.63 307.69 -6.70 -39.33 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -2.93 Total: -3.97 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 0.26 Total: -10.33 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.73 Total: -25.06 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.63 Total: -14.72 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.30 Total: -5.51 kcal Atomic # 17 Polarization: 0.65 SS G_CDS: -1.45 Total: -0.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.63 -6.70 -39.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805539049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.884 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds