Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48498 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46911 * 299.99906 * 3 2 1 6 6 H 1.48501 * 109.46949 * 59.99816 * 3 2 1 7 7 C 1.37877 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99411 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00076 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.46878 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99786 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46960 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.46912 * 64.99743 * 12 11 10 14 14 C 1.34923 * 116.99634 * 179.97438 * 13 12 11 15 15 O 1.21639 * 120.00301 * 0.02562 * 14 13 12 16 16 C 1.46278 * 119.99705 * 180.02562 * 14 13 12 17 17 C 1.36793 * 125.44848 * 180.02562 * 16 14 13 18 18 C 1.37345 * 113.30270 * 179.97438 * 17 16 14 19 19 C 1.34051 * 115.08633 * 0.02562 * 18 17 16 20 20 Cl 1.73603 * 124.52984 * 179.97438 * 19 18 17 21 21 S 1.70620 * 110.94204 * 359.97438 * 19 18 17 22 22 H 0.97004 * 119.99570 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46696 * 60.00556 * 9 7 2 24 24 H 1.08996 * 109.47274 * 300.00422 * 9 7 2 25 25 H 1.09001 * 109.47120 * 60.00116 * 11 10 9 26 26 H 1.08999 * 109.46922 * 299.99719 * 11 10 9 27 27 H 1.08997 * 109.47282 * 304.99946 * 12 11 10 28 28 H 1.08997 * 109.47020 * 184.99967 * 12 11 10 29 29 H 1.07999 * 123.34923 * 359.97438 * 17 16 14 30 30 H 1.08000 * 122.45242 * 179.72694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3874 -5.8902 1.2193 14 6 4.3867 -6.7826 1.3792 15 8 4.6231 -7.5942 0.5046 16 6 5.1856 -6.7741 2.6045 17 6 6.2208 -7.6240 2.8825 18 6 6.7985 -7.3942 4.1072 19 6 6.2568 -6.3908 4.8118 20 17 6.7935 -5.8916 6.3855 21 16 4.9693 -5.6697 3.9554 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 0.9452 -4.9822 -0.8914 26 1 0.9446 -4.9827 0.8887 27 1 3.3215 -5.7953 -0.8435 28 1 2.1820 -6.9374 -0.0917 29 1 6.5511 -8.3986 2.2062 30 1 7.6253 -7.9822 4.4774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815169027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = -107.718069 kcal Electronic energy + Delta-G solvation = -17532.355720 eV Core-core repulsion = 14252.775403 eV Total energy + Delta-G solvation = -3279.580318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47210 -38.37348 -37.21397 -36.78627 -36.06645 -32.79245 -30.78383 -29.59608 -26.99021 -25.55374 -23.05183 -22.36741 -21.65000 -19.73363 -19.13005 -17.17000 -16.68049 -16.52598 -16.30660 -15.46597 -15.35203 -14.67377 -14.35863 -14.12992 -13.83017 -13.57463 -13.04062 -13.02162 -12.74845 -12.01065 -11.85645 -11.64057 -11.48043 -11.05714 -10.97384 -10.90191 -10.79213 -10.60614 -10.42143 -10.06833 -9.13725 -9.10000 -8.97183 -8.90778 -8.23972 -6.13770 -4.15401 -0.04860 0.70324 1.44363 1.79185 1.84474 2.60647 2.73404 3.28033 3.34669 3.41244 4.30676 4.63505 4.72674 4.75620 4.93205 5.16499 5.23124 5.40605 5.41940 5.57732 5.78528 5.82355 5.91207 6.03185 6.43369 7.02779 7.37344 7.66699 7.76727 8.10291 8.49460 8.97454 9.49611 10.97820 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.003699 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.475706 B = 7567.785699 C = 8989.393229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.332 6.332 14 C 0.538 3.462 15 O -0.500 6.500 16 C -0.255 4.255 17 C -0.043 4.043 18 C -0.142 4.142 19 C -0.177 4.177 20 Cl -0.006 7.006 21 S 0.328 5.672 22 H 0.264 0.736 23 H 0.006 0.994 24 H 0.008 0.992 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.163 0.837 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 -15.888 9.900 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.248 6.248 14 C 0.382 3.618 15 O -0.391 6.391 16 C -0.374 4.374 17 C -0.076 4.076 18 C -0.175 4.175 19 C -0.324 4.324 20 Cl 0.022 6.978 21 S 0.597 5.403 22 H 0.073 0.927 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.180 0.820 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.866 -14.678 10.093 20.363 hybrid contribution 1.108 -0.366 -0.242 1.192 sum 10.974 -15.044 9.851 21.066 Atomic orbital electron populations 1.69971 1.06108 1.27106 1.50586 1.24944 0.94974 0.99444 0.95084 0.86287 0.80066 0.82547 0.77654 1.19438 1.20827 1.20785 1.21085 0.94151 0.89262 1.50791 0.91435 1.20251 0.88737 0.83474 0.95544 1.87921 1.35349 1.12599 1.95240 1.22335 0.93121 0.85411 1.00728 1.22919 0.93748 0.99065 0.84234 1.86252 1.43091 1.53463 1.42020 1.19516 0.78639 0.78616 0.85025 1.90882 1.68046 1.38073 1.42063 1.23752 1.06118 1.07384 1.00190 1.20605 0.92679 0.98338 0.96020 1.19987 1.03696 0.99303 0.94511 1.25404 1.06488 1.04932 0.95566 1.98393 1.88805 1.90049 1.20543 1.84003 1.24104 1.28321 1.03919 0.92673 0.97570 0.97453 0.91750 0.93103 0.90398 0.90365 0.81968 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.24 5.69 36.00 0.20 5.45 16 10 O -0.39 -9.34 10.29 -40.09 -0.41 -9.75 16 11 C 0.06 1.10 6.32 37.16 0.23 1.34 16 12 C 0.07 1.15 5.76 37.16 0.21 1.37 16 13 O -0.33 -5.49 9.93 -44.22 -0.44 -5.93 16 14 C 0.54 8.16 7.91 33.96 0.27 8.43 16 15 O -0.50 -8.25 16.61 -19.37 -0.32 -8.57 16 16 C -0.25 -3.19 6.45 -36.88 -0.24 -3.43 16 17 C -0.04 -0.43 10.01 -40.43 -0.40 -0.84 16 18 C -0.14 -1.25 10.08 -41.38 -0.42 -1.67 16 19 C -0.18 -1.74 6.82 29.26 0.20 -1.54 16 20 Cl -0.01 -0.06 29.27 -51.86 -1.52 -1.58 16 21 S 0.33 3.74 22.92 -107.50 -2.46 1.28 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 28 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -32.11 308.14 -8.08 -40.19 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -2.93 Total: -6.33 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.36 Total: -4.75 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.17 Total: -24.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -2.46 Total: 1.28 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.52 Total: -1.58 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.11 -8.08 -40.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815169027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.524 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds