Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47237 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00300 * 3 2 1 6 6 H 1.48503 * 109.47118 * 150.00606 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34895 * 117.00197 * 179.97438 * 13 12 11 15 15 O 1.21638 * 119.99902 * 0.02562 * 14 13 12 16 16 C 1.46374 * 120.00357 * 180.02562 * 14 13 12 17 17 C 1.36778 * 125.46223 * 180.02562 * 16 14 13 18 18 C 1.37463 * 113.28356 * 179.97438 * 17 16 14 19 19 Cl 1.73599 * 122.45948 * 179.97438 * 18 17 16 20 20 C 1.33923 * 115.08926 * 359.97438 * 18 17 16 21 21 S 1.70617 * 110.96318 * 359.73042 * 20 18 17 22 22 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 24 24 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 25 25 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 26 26 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 27 27 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 28 28 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 29 29 H 1.08006 * 123.35670 * 0.02562 * 17 16 14 30 30 H 1.08000 * 124.51704 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3993 -6.7806 1.3994 15 8 4.6353 -7.5926 0.5250 16 6 5.1997 -6.7715 2.6249 17 6 6.2350 -7.6210 2.9029 18 6 6.8134 -7.3899 4.1283 19 17 8.1469 -8.3300 4.7213 20 6 6.2730 -6.3862 4.8312 21 16 4.9900 -5.6607 3.9717 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.9446 -4.9827 -0.8897 26 1 0.9452 -4.9822 0.8902 27 1 3.3210 -5.7957 -0.8430 28 1 2.1820 -6.9376 -0.0898 29 1 6.5656 -8.3956 2.2267 30 1 6.6079 -6.0743 5.8094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815237708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = -109.059698 kcal Electronic energy + Delta-G solvation = -17504.456434 eV Core-core repulsion = 14224.817939 eV Total energy + Delta-G solvation = -3279.638495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35464 -38.48301 -37.10442 -36.36872 -35.94779 -32.80514 -30.85278 -29.75171 -27.01436 -25.73775 -22.93868 -22.36487 -21.62076 -19.65076 -19.06445 -17.07813 -16.60344 -16.54371 -16.40211 -15.44098 -15.36177 -14.71836 -14.38393 -14.09868 -13.65968 -13.54337 -13.18096 -12.97745 -12.68806 -12.00232 -11.72814 -11.59751 -11.48211 -11.11292 -10.99377 -10.88610 -10.82593 -10.62573 -10.46555 -10.08362 -9.35123 -9.16210 -8.91506 -8.79576 -8.25005 -6.14683 -4.16482 0.00135 0.94070 1.29914 1.73357 2.13033 2.65540 2.71569 3.28416 3.33585 3.38839 4.29478 4.45923 4.65012 4.73683 4.80782 5.14682 5.21374 5.22059 5.39811 5.49736 5.64363 5.80623 5.88365 6.01596 6.40358 7.01599 7.36204 7.64204 7.75304 8.09225 8.48325 8.96001 9.48436 10.96844 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.003235 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.012801 B = 8653.797497 C = 9597.660311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.077 3.923 13 O -0.337 6.337 14 C 0.539 3.461 15 O -0.501 6.501 16 C -0.253 4.253 17 C -0.046 4.046 18 C -0.067 4.067 19 Cl -0.048 7.048 20 C -0.242 4.242 21 S 0.328 5.672 22 H 0.264 0.736 23 H 0.006 0.994 24 H 0.008 0.992 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.164 0.836 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.478 -15.668 9.757 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.004 3.996 13 O -0.253 6.253 14 C 0.383 3.617 15 O -0.391 6.391 16 C -0.372 4.372 17 C -0.080 4.080 18 C -0.107 4.107 19 Cl -0.020 7.020 20 C -0.381 4.381 21 S 0.597 5.403 22 H 0.074 0.926 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.182 0.818 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.668 -14.583 9.849 20.078 hybrid contribution 1.199 -0.499 -0.308 1.335 sum 10.867 -15.083 9.541 20.895 Atomic orbital electron populations 1.69954 1.06113 1.27239 1.50466 1.24947 0.94981 0.99455 0.95080 0.86331 0.79687 0.82182 0.78274 1.20449 1.21051 1.19567 1.21045 0.94110 0.89271 1.50950 0.91486 1.20241 0.88726 0.83456 0.95535 1.87921 1.35343 1.12593 1.95240 1.22337 0.93141 0.85436 1.00756 1.23309 0.93566 0.99112 0.83660 1.86665 1.43057 1.53329 1.42274 1.19460 0.78678 0.78672 0.84926 1.90884 1.68106 1.38072 1.42082 1.23529 1.05603 1.07211 1.00853 1.20449 0.93073 0.99115 0.95349 1.19415 0.96760 0.98729 0.95809 1.98371 1.44310 1.71621 1.87715 1.25620 1.04118 1.01518 1.06819 1.83905 1.25002 1.27366 1.04003 0.92603 0.97587 0.97461 0.91677 0.93071 0.90135 0.90075 0.81843 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.98 9.43 -34.44 -0.32 -15.30 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.21 5.69 36.00 0.20 5.42 16 10 O -0.39 -9.24 10.30 -38.79 -0.40 -9.64 16 11 C 0.06 1.07 6.33 37.16 0.24 1.31 16 12 C 0.08 1.18 5.86 37.16 0.22 1.39 16 13 O -0.34 -5.50 10.05 -43.81 -0.44 -5.94 16 14 C 0.54 8.17 7.92 34.00 0.27 8.44 16 15 O -0.50 -8.36 16.64 -19.37 -0.32 -8.68 16 16 C -0.25 -3.16 6.45 -36.84 -0.24 -3.40 16 17 C -0.05 -0.51 9.89 -40.39 -0.40 -0.91 16 18 C -0.07 -0.65 6.25 -41.38 -0.26 -0.91 16 19 Cl -0.05 -0.43 29.10 -51.86 -1.51 -1.94 16 20 C -0.24 -2.08 10.78 29.22 0.31 -1.77 16 21 S 0.33 3.39 22.92 -107.50 -2.46 0.92 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -32.08 308.29 -7.78 -39.86 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: -2.93 Total: -5.80 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.08 Total: -4.21 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.16 Total: -24.26 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.46 Total: 0.92 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.51 Total: -1.94 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.08 -7.78 -39.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815237708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.204 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds