Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47237 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00300 * 3 2 1 6 6 H 1.48503 * 109.47118 * 150.00606 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34895 * 117.00197 * 179.97438 * 13 12 11 15 15 O 1.21638 * 119.99902 * 0.02562 * 14 13 12 16 16 C 1.46374 * 120.00357 * 180.02562 * 14 13 12 17 17 C 1.36778 * 125.46223 * 180.02562 * 16 14 13 18 18 C 1.37463 * 113.28356 * 179.97438 * 17 16 14 19 19 Cl 1.73599 * 122.45948 * 179.97438 * 18 17 16 20 20 C 1.33923 * 115.08926 * 359.97438 * 18 17 16 21 21 S 1.70617 * 110.96318 * 359.73042 * 20 18 17 22 22 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 24 24 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 25 25 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 26 26 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 27 27 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 28 28 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 29 29 H 1.08006 * 123.35670 * 0.02562 * 17 16 14 30 30 H 1.08000 * 124.51704 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3993 -6.7806 1.3994 15 8 4.6353 -7.5926 0.5250 16 6 5.1997 -6.7715 2.6249 17 6 6.2350 -7.6210 2.9029 18 6 6.8134 -7.3899 4.1283 19 17 8.1469 -8.3300 4.7213 20 6 6.2730 -6.3862 4.8312 21 16 4.9900 -5.6607 3.9717 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.9446 -4.9827 -0.8897 26 1 0.9452 -4.9822 0.8902 27 1 3.3210 -5.7957 -0.8430 28 1 2.1820 -6.9376 -0.0898 29 1 6.5656 -8.3956 2.2267 30 1 6.6079 -6.0743 5.8094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815237708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = -128.149334 kcal Electronic energy + Delta-G solvation = -17505.284223 eV Core-core repulsion = 14224.817939 eV Total energy + Delta-G solvation = -3280.466284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52961 -39.36092 -38.67625 -37.50725 -36.97802 -34.93887 -32.08018 -30.92593 -29.02372 -26.70052 -24.58029 -24.00243 -22.82788 -20.52416 -20.09132 -18.68704 -18.15524 -17.96180 -17.36438 -17.08486 -16.49799 -16.39751 -16.09808 -15.17844 -15.02631 -14.43131 -14.30470 -14.19440 -13.98314 -13.66082 -13.24272 -12.92154 -12.70066 -12.52076 -12.48584 -12.36152 -12.04064 -11.86656 -11.82362 -11.78509 -11.27464 -10.89081 -10.26612 -10.18767 -9.59849 -8.31438 -6.43363 -0.86981 0.14086 0.47074 0.86175 1.25663 1.41804 1.43977 1.56165 1.63823 1.68073 2.35384 3.02771 3.05669 3.52754 3.83636 3.90245 4.02716 4.10162 4.33576 4.41505 4.52386 4.62973 4.76870 4.82040 4.86670 5.17897 5.22255 5.55451 5.96150 6.45988 6.52227 6.80425 7.28248 8.80689 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.003235 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.012801 B = 8653.797497 C = 9597.660311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.080 3.920 13 O -0.353 6.353 14 C 0.540 3.460 15 O -0.525 6.525 16 C -0.288 4.288 17 C -0.034 4.034 18 C -0.081 4.081 19 Cl -0.039 7.039 20 C -0.213 4.213 21 S 0.332 5.668 22 H 0.271 0.729 23 H -0.008 1.008 24 H -0.009 1.009 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.167 0.833 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.596 -15.379 10.819 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.006 3.994 13 O -0.269 6.269 14 C 0.386 3.614 15 O -0.417 6.417 16 C -0.406 4.406 17 C -0.068 4.068 18 C -0.120 4.120 19 Cl -0.011 7.011 20 C -0.353 4.353 21 S 0.600 5.400 22 H 0.080 0.920 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.184 0.816 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 10.785 -14.319 10.914 20.987 hybrid contribution 0.868 -0.690 -0.573 1.248 sum 11.653 -15.009 10.342 21.634 Atomic orbital electron populations 1.70052 1.07667 1.28675 1.50440 1.25918 0.95946 1.03253 0.93918 0.85217 0.78457 0.77172 0.78797 1.19437 1.19863 1.18844 1.21386 0.94101 0.90914 1.52325 0.92142 1.19867 0.88532 0.84313 0.93938 1.87864 1.35537 1.14185 1.95350 1.22663 0.94348 0.83241 1.02098 1.23307 0.93051 0.99600 0.83392 1.86650 1.43695 1.54056 1.42530 1.19800 0.78233 0.77880 0.85517 1.90857 1.68759 1.38922 1.43155 1.23415 1.06764 1.09387 1.01054 1.20586 0.92169 0.98344 0.95737 1.19416 0.97458 0.99508 0.95652 1.98378 1.43758 1.71445 1.87487 1.25948 1.02203 0.99820 1.07288 1.83922 1.25707 1.26981 1.03345 0.92006 0.99041 0.99116 0.89715 0.92290 0.90656 0.86881 0.81596 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 2 C 0.01 0.47 5.46 84.66 0.46 0.94 16 3 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -32.37 9.43 25.60 0.24 -32.13 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.44 5.69 71.23 0.41 11.85 16 10 O -0.41 -19.65 10.30 -145.57 -1.50 -21.15 16 11 C 0.05 1.87 6.33 71.98 0.46 2.32 16 12 C 0.08 2.40 5.86 71.98 0.42 2.83 16 13 O -0.35 -11.54 10.05 -55.43 -0.56 -12.09 16 14 C 0.54 16.42 7.92 69.94 0.55 16.98 16 15 O -0.52 -17.58 16.64 19.38 0.32 -17.26 16 16 C -0.29 -7.07 6.45 24.05 0.16 -6.92 16 17 C -0.03 -0.71 9.89 21.74 0.22 -0.50 16 18 C -0.08 -1.43 6.25 21.10 0.13 -1.30 16 19 Cl -0.04 -0.62 29.10 -2.72 -0.08 -0.70 16 20 C -0.21 -3.16 10.78 66.84 0.72 -2.44 16 21 S 0.33 6.46 22.92 -56.49 -1.29 5.17 16 22 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 23 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 24 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 25 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 29 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.21 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -68.67 308.29 4.13 -64.54 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.16 Total: -1.27 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 3.76 Total: -8.37 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.28 Total: -54.61 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -1.73 Total: -50.50 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -1.29 Total: 5.17 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -68.67 4.13 -64.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815237708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.607 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds