Wall clock time and date at job start Tue Mar 31 2020 06:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47101 * 300.00102 * 3 2 1 6 6 H 1.48496 * 109.46974 * 60.00094 * 3 2 1 7 7 C 1.37877 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00160 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99790 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46729 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.46979 * 65.00181 * 12 11 10 14 14 C 1.34924 * 116.99792 * 179.97438 * 13 12 11 15 15 O 1.21647 * 119.99879 * 0.02562 * 14 13 12 16 16 C 1.46244 * 119.99962 * 179.97438 * 14 13 12 17 17 S 1.75825 * 125.46506 * 359.97438 * 16 14 13 18 18 C 1.70608 * 91.58706 * 180.02562 * 17 16 14 19 19 C 1.33813 * 111.00714 * 0.02562 * 18 17 16 20 20 C 1.36894 * 125.46678 * 179.97438 * 16 14 13 21 21 Cl 1.73601 * 123.38449 * 0.02562 * 20 16 14 22 22 H 0.96990 * 119.99865 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46969 * 60.00486 * 9 7 2 24 24 H 1.08997 * 109.47396 * 300.00288 * 9 7 2 25 25 H 1.08991 * 109.47363 * 60.00224 * 11 10 9 26 26 H 1.09001 * 109.47225 * 300.00373 * 11 10 9 27 27 H 1.08998 * 109.47216 * 305.00002 * 12 11 10 28 28 H 1.09002 * 109.46731 * 184.99647 * 12 11 10 29 29 H 1.08000 * 124.49832 * 179.73652 * 18 17 16 30 30 H 1.07995 * 122.44845 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 8 2.1798 -3.5853 -0.0017 11 6 1.5652 -4.8754 -0.0024 12 6 2.6483 -5.9562 -0.0030 13 8 3.3876 -5.8902 1.2180 14 6 4.3869 -6.7826 1.3779 15 8 4.6234 -7.5941 0.5031 16 6 5.1863 -6.7735 2.6025 17 16 4.9717 -5.6680 3.9527 18 6 6.2594 -6.3887 4.8090 19 6 6.8005 -7.3913 4.1073 20 6 6.2218 -7.6244 2.8814 21 17 6.7530 -8.8707 1.7959 22 1 -0.4849 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 0.9448 -4.9818 -0.8921 26 1 0.9454 -4.9831 0.8877 27 1 3.3218 -5.7951 -0.8448 28 1 2.1823 -6.9374 -0.0931 29 1 6.5964 -6.0742 5.7857 30 1 7.6303 -7.9754 4.4767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815245335.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:14 Heat of formation + Delta-G solvation = -124.623363 kcal Electronic energy + Delta-G solvation = -17745.407816 eV Core-core repulsion = 14465.094429 eV Total energy + Delta-G solvation = -3280.313386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61420 -39.35772 -38.63892 -37.44768 -37.18457 -34.94108 -32.11315 -30.89450 -29.01775 -26.48345 -24.59755 -24.09464 -22.84246 -20.53403 -20.10287 -18.70017 -18.15456 -18.02855 -17.32963 -17.09509 -16.44392 -16.36928 -15.93001 -15.10129 -15.03752 -14.57097 -14.33794 -14.10028 -13.98352 -13.62664 -13.25039 -12.90315 -12.71946 -12.59801 -12.48186 -12.33149 -12.00156 -11.89315 -11.74170 -11.55002 -11.26109 -10.89938 -10.27358 -10.11048 -9.59483 -8.31788 -6.43776 -0.87969 0.06298 0.71930 1.02766 1.30799 1.41422 1.42433 1.52032 1.57248 1.64718 2.35255 3.02348 3.04960 3.59287 3.86953 3.91263 4.07083 4.09458 4.39524 4.49878 4.59801 4.66031 4.85545 4.86152 4.96516 5.17753 5.26084 5.55319 5.95662 6.48612 6.55362 6.80070 7.27925 8.80653 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.003550 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.952432 B = 7886.275644 C = 8642.225683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.079 3.921 13 O -0.348 6.348 14 C 0.531 3.469 15 O -0.510 6.510 16 C -0.306 4.306 17 S 0.311 5.689 18 C -0.196 4.196 19 C -0.157 4.157 20 C 0.026 3.974 21 Cl -0.027 7.027 22 H 0.271 0.729 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.222 0.778 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -15.563 11.407 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.022 4.022 12 C 0.005 3.995 13 O -0.265 6.265 14 C 0.376 3.624 15 O -0.401 6.401 16 C -0.425 4.425 17 S 0.579 5.421 18 C -0.335 4.335 19 C -0.186 4.186 20 C -0.018 4.018 21 Cl 0.002 6.998 22 H 0.080 0.920 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.238 0.762 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 11.285 -14.550 11.351 21.631 hybrid contribution 0.694 -0.716 -0.863 1.319 sum 11.980 -15.266 10.488 22.058 Atomic orbital electron populations 1.70062 1.07664 1.28621 1.50483 1.25918 0.95945 1.03239 0.93876 0.85162 0.78646 0.77426 0.78341 1.18967 1.19722 1.19453 1.21406 0.94070 0.90901 1.52294 0.92214 1.19884 0.88551 0.84337 0.93945 1.87867 1.35561 1.14179 1.95343 1.22644 0.94277 0.83227 1.02002 1.22866 0.93186 0.99418 0.84043 1.86224 1.43798 1.54315 1.42136 1.19814 0.78519 0.78245 0.85822 1.90891 1.68158 1.38302 1.42766 1.23510 1.06906 1.09931 1.02164 1.83927 1.27687 1.27544 1.02903 1.25993 1.00857 0.99735 1.06881 1.19953 1.04832 1.01883 0.91958 1.20726 0.94720 0.92445 0.93949 1.98400 1.88649 1.49785 1.62981 0.91994 0.99068 0.99072 0.89868 0.92335 0.91177 0.87444 0.76156 0.79836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.98 44.01 29.54 68.60 2.03 46.04 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -32.69 9.43 25.60 0.24 -32.45 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.58 5.69 71.24 0.41 11.99 16 10 O -0.41 -20.16 10.29 -144.34 -1.49 -21.64 16 11 C 0.06 2.02 6.32 71.98 0.45 2.47 16 12 C 0.08 2.52 5.76 71.98 0.41 2.94 16 13 O -0.35 -12.04 9.93 -55.41 -0.55 -12.59 16 14 C 0.53 17.31 7.91 69.90 0.55 17.86 16 15 O -0.51 -18.02 14.86 19.35 0.29 -17.73 16 16 C -0.31 -8.13 6.45 24.04 0.16 -7.98 16 17 S 0.31 6.17 22.92 -56.49 -1.29 4.87 16 18 C -0.20 -2.38 10.92 66.81 0.73 -1.65 16 19 C -0.16 -2.33 10.06 21.10 0.21 -2.12 16 20 C 0.03 0.60 6.40 21.79 0.14 0.74 16 21 Cl -0.03 -0.66 27.25 -2.72 -0.07 -0.73 16 22 H 0.27 14.86 8.31 -92.72 -0.77 14.09 16 23 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 28 H 0.11 2.79 8.13 -2.39 -0.02 2.78 16 29 H 0.22 0.83 8.06 -2.91 -0.02 0.81 16 30 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -71.87 304.84 4.13 -67.75 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: 1.16 Total: -3.83 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 3.77 Total: -7.24 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.28 Total: -54.90 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -1.75 Total: -51.96 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.29 Total: 4.87 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.07 Total: -0.73 kcal Total: -71.87 4.13 -67.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815245335.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.876 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds