Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30944 * 123.03369 * 2 1 4 4 C 1.29494 * 117.44058 * 179.72697 * 3 2 1 5 5 Br 1.89095 * 124.70607 * 180.02562 * 4 3 2 6 6 S 1.70920 * 110.58611 * 0.02562 * 4 3 2 7 7 C 1.36788 * 123.03755 * 179.70372 * 2 1 3 8 8 C 1.46490 * 126.16550 * 0.27519 * 7 2 1 9 9 O 1.21734 * 120.00547 * 359.97438 * 8 7 2 10 10 N 1.34780 * 119.99773 * 179.97438 * 8 7 2 11 11 C 1.36900 * 119.99992 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99659 * 359.97438 * 11 10 8 13 13 C 1.38999 * 119.99927 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99940 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99827 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46745 * 90.00174 * 15 13 11 17 17 H 1.48504 * 109.47433 * 209.99754 * 15 13 11 18 18 H 1.48499 * 109.47607 * 330.00597 * 15 13 11 19 19 H 1.09001 * 109.46761 * 90.02781 * 1 2 3 20 20 H 1.09002 * 109.47313 * 210.02045 * 1 2 3 21 21 H 1.08996 * 109.47263 * 330.02376 * 1 2 3 22 22 H 0.97001 * 120.00004 * 359.97438 * 10 8 7 23 23 H 0.96999 * 119.99608 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.0978 0.0000 4 6 3.5095 0.9716 0.0055 5 35 4.7326 2.4138 0.0073 6 16 3.9517 -0.6794 0.0108 7 6 2.2527 -1.1467 0.0059 8 6 1.7326 -2.5162 0.0073 9 8 0.5310 -2.7110 0.0035 10 7 2.5846 -3.5605 0.0129 11 6 2.0985 -4.8404 0.0147 12 1 1.0324 -5.0131 0.0121 13 6 2.9772 -5.9174 0.0200 14 7 4.2743 -5.7072 0.0236 15 14 2.3140 -7.6637 0.0232 16 1 2.1418 -8.1303 -1.3761 17 1 3.2700 -8.5550 0.7281 18 1 1.0029 -7.6941 0.7199 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 3.5421 -3.4053 0.0156 23 1 4.8874 -6.4588 0.0269 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816954891.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = 1.802517 kcal Electronic energy + Delta-G solvation = -13036.155533 eV Core-core repulsion = 10443.356355 eV Total energy + Delta-G solvation = -2592.799178 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.66969 -38.01254 -34.36257 -32.29445 -31.66655 -30.28967 -28.09890 -25.13062 -24.01012 -21.21322 -18.99449 -18.09951 -17.71838 -15.93981 -15.17518 -15.01023 -14.49028 -13.94711 -13.42212 -13.23800 -12.97247 -12.39719 -12.07511 -11.79221 -11.32329 -10.97437 -10.78664 -10.68710 -10.64911 -10.51229 -9.87166 -9.60833 -9.16961 -8.69210 -8.41507 -8.30245 -6.83138 -4.09270 0.42011 0.87506 1.73021 1.84530 2.72636 3.04820 3.09384 3.14919 3.88702 3.97328 4.62924 4.76813 5.00762 5.45548 5.93280 6.08736 6.12412 6.24072 6.77442 7.17163 7.62792 7.81133 8.20076 8.77496 9.09210 9.66657 10.31969 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.033413 B = 0.004760 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.784188 B = 5880.757410 C = 6703.397119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.092 3.908 3 N -0.434 5.434 4 C -0.017 4.017 5 Br 0.037 6.963 6 S 0.211 5.789 7 C -0.218 4.218 8 C 0.488 3.512 9 O -0.578 6.578 10 N -0.530 5.530 11 C -0.282 4.282 12 H 0.116 0.884 13 C 0.024 3.976 14 N -0.873 5.873 15 Si 0.942 3.058 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.264 1.264 19 H 0.072 0.928 20 H 0.103 0.897 21 H 0.064 0.936 22 H 0.393 0.607 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 11.444 0.059 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 N -0.150 5.150 4 C -0.369 4.369 5 Br 0.117 6.883 6 S 0.463 5.537 7 C -0.345 4.345 8 C 0.276 3.724 9 O -0.466 6.466 10 N -0.163 5.163 11 C -0.413 4.413 12 H 0.134 0.866 13 C -0.182 4.182 14 N -0.511 5.511 15 Si 0.767 3.233 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.188 1.188 19 H 0.091 0.909 20 H 0.121 0.879 21 H 0.083 0.917 22 H 0.227 0.773 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.574 11.741 0.068 12.600 hybrid contribution -0.575 -0.836 -0.047 1.016 sum 3.999 10.904 0.020 11.614 Atomic orbital electron populations 1.20490 0.85799 1.03929 1.03159 1.20651 0.98291 0.84180 1.01567 1.65772 1.03300 1.32420 1.13525 1.27869 0.95568 0.97743 1.15754 1.96727 1.51800 1.41979 1.97771 1.84005 1.06486 0.97561 1.65633 1.26551 0.94759 1.00747 1.12407 1.16171 0.86842 0.81522 0.87891 1.90632 1.13849 1.83537 1.58589 1.42027 1.08638 1.05677 1.59950 1.20020 0.95337 0.80525 1.45436 0.86626 1.25546 0.94983 1.01468 0.96244 1.69612 1.01834 1.34070 1.45559 0.85658 0.79009 0.79737 0.78891 1.19817 1.20418 1.18823 0.90943 0.87855 0.91735 0.77282 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 9.72 36.00 0.35 -0.95 14 2 C 0.09 1.79 6.83 -83.50 -0.57 1.22 14 3 N -0.43 -8.01 10.50 -9.69 -0.10 -8.11 14 4 C -0.02 -0.29 7.88 51.78 0.41 0.12 14 5 Br 0.04 0.48 34.12 -68.01 -2.32 -1.84 14 6 S 0.21 3.61 22.33 -107.50 -2.40 1.21 14 7 C -0.22 -4.48 6.51 -36.78 -0.24 -4.72 14 8 C 0.49 11.68 7.73 -12.93 -0.10 11.58 14 9 O -0.58 -15.06 13.89 5.16 0.07 -14.98 14 10 N -0.53 -13.05 5.28 -12.22 -0.06 -13.12 14 11 C -0.28 -7.31 9.68 -15.01 -0.15 -7.46 14 12 H 0.12 3.08 7.15 -52.48 -0.38 2.71 14 13 C 0.02 0.58 5.50 -17.45 -0.10 0.48 14 14 N -0.87 -21.82 13.05 55.50 0.72 -21.10 14 15 Si 0.94 19.13 29.55 -169.99 -5.02 14.11 14 16 H -0.27 -5.49 7.11 56.52 0.40 -5.08 14 17 H -0.28 -5.54 7.11 56.52 0.40 -5.14 14 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 14 19 H 0.07 1.19 8.14 -51.93 -0.42 0.77 14 20 H 0.10 1.98 6.05 -51.93 -0.31 1.66 14 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 14 22 H 0.39 9.27 7.08 -40.82 -0.29 8.98 14 23 H 0.28 6.56 8.31 -40.82 -0.34 6.22 14 LS Contribution 248.76 15.07 3.75 3.75 Total: -1.00 -27.37 248.76 -6.72 -34.09 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -0.96 Total: 5.72 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.39 Total: 0.28 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.56 Total: -42.33 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.07 Total: -14.98 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.40 Total: 1.21 kcal Atomic # 35 Polarization: 0.48 SS G_CDS: -2.32 Total: -1.84 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.37 -6.72 -34.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816954891.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.896 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds