Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30944 * 123.03369 * 2 1 4 4 C 1.29494 * 117.44058 * 179.72697 * 3 2 1 5 5 Br 1.89095 * 124.70607 * 180.02562 * 4 3 2 6 6 S 1.70920 * 110.58611 * 0.02562 * 4 3 2 7 7 C 1.36788 * 123.03755 * 179.70372 * 2 1 3 8 8 C 1.46490 * 126.16550 * 0.27519 * 7 2 1 9 9 O 1.21734 * 120.00547 * 359.97438 * 8 7 2 10 10 N 1.34780 * 119.99773 * 179.97438 * 8 7 2 11 11 C 1.36900 * 119.99992 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99659 * 359.97438 * 11 10 8 13 13 C 1.38999 * 119.99927 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99940 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99827 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46745 * 90.00174 * 15 13 11 17 17 H 1.48504 * 109.47433 * 209.99754 * 15 13 11 18 18 H 1.48499 * 109.47607 * 330.00597 * 15 13 11 19 19 H 1.09001 * 109.46761 * 90.02781 * 1 2 3 20 20 H 1.09002 * 109.47313 * 210.02045 * 1 2 3 21 21 H 1.08996 * 109.47263 * 330.02376 * 1 2 3 22 22 H 0.97001 * 120.00004 * 359.97438 * 10 8 7 23 23 H 0.96999 * 119.99608 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.0978 0.0000 4 6 3.5095 0.9716 0.0055 5 35 4.7326 2.4138 0.0073 6 16 3.9517 -0.6794 0.0108 7 6 2.2527 -1.1467 0.0059 8 6 1.7326 -2.5162 0.0073 9 8 0.5310 -2.7110 0.0035 10 7 2.5846 -3.5605 0.0129 11 6 2.0985 -4.8404 0.0147 12 1 1.0324 -5.0131 0.0121 13 6 2.9772 -5.9174 0.0200 14 7 4.2743 -5.7072 0.0236 15 14 2.3140 -7.6637 0.0232 16 1 2.1418 -8.1303 -1.3761 17 1 3.2700 -8.5550 0.7281 18 1 1.0029 -7.6941 0.7199 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 3.5421 -3.4053 0.0156 23 1 4.8874 -6.4588 0.0269 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816954891.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -16.640559 kcal Electronic energy + Delta-G solvation = -13036.955285 eV Core-core repulsion = 10443.356355 eV Total energy + Delta-G solvation = -2593.598930 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.24917 -39.81216 -36.21700 -33.74254 -33.49781 -31.70147 -29.69508 -26.91882 -25.46866 -22.91261 -20.77760 -19.80638 -19.25399 -17.61930 -16.94062 -16.56448 -16.12854 -15.58422 -15.22565 -14.78495 -14.62303 -13.77908 -13.68722 -13.37451 -12.98581 -12.59470 -12.38626 -12.11217 -12.06534 -11.94494 -11.65594 -11.05301 -10.67246 -10.57430 -10.22001 -9.82528 -8.63251 -6.06016 -1.06125 -0.52954 0.29501 0.34052 1.17482 1.43574 1.45692 1.56811 2.19023 2.22398 2.90015 3.13699 3.27221 3.90817 4.20035 4.59289 4.74312 4.82998 5.27431 5.34744 5.78673 6.26984 6.36103 6.91572 7.25724 7.80982 8.53316 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.033413 B = 0.004760 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.784188 B = 5880.757410 C = 6703.397119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.109 3.891 3 N -0.449 5.449 4 C -0.002 4.002 5 Br 0.083 6.917 6 S 0.263 5.737 7 C -0.268 4.268 8 C 0.496 3.504 9 O -0.605 6.605 10 N -0.544 5.544 11 C -0.330 4.330 12 H 0.095 0.905 13 C -0.008 4.008 14 N -0.903 5.903 15 Si 1.004 2.996 16 H -0.268 1.268 17 H -0.268 1.268 18 H -0.268 1.268 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.090 0.910 22 H 0.395 0.605 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 13.141 0.013 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 N -0.165 5.165 4 C -0.355 4.355 5 Br 0.164 6.836 6 S 0.516 5.484 7 C -0.394 4.394 8 C 0.283 3.717 9 O -0.494 6.494 10 N -0.178 5.178 11 C -0.460 4.460 12 H 0.113 0.887 13 C -0.211 4.211 14 N -0.542 5.542 15 Si 0.826 3.174 16 H -0.193 1.193 17 H -0.193 1.193 18 H -0.192 1.192 19 H 0.101 0.899 20 H 0.101 0.899 21 H 0.109 0.891 22 H 0.229 0.771 23 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.496 13.432 0.021 14.513 hybrid contribution -0.770 -0.894 -0.035 1.180 sum 4.726 12.538 -0.014 13.400 Atomic orbital electron populations 1.20515 0.84823 1.04163 1.03854 1.21036 0.99275 0.84125 0.98632 1.65962 1.03785 1.31681 1.15102 1.28662 0.95987 0.99431 1.11384 1.96809 1.49684 1.39697 1.97412 1.83886 1.03512 0.96979 1.64010 1.26224 0.97452 0.99394 1.16289 1.16604 0.86493 0.82662 0.85913 1.90593 1.15186 1.84727 1.58909 1.41945 1.08615 1.05542 1.61664 1.19920 0.94770 0.81789 1.49479 0.88690 1.26288 0.95130 1.04498 0.95140 1.69657 1.02501 1.35130 1.46896 0.84761 0.78279 0.75384 0.78977 1.19272 1.19251 1.19196 0.89904 0.89888 0.89119 0.77090 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.51 9.72 71.23 0.69 -1.82 14 2 C 0.11 4.07 6.83 42.35 0.29 4.36 14 3 N -0.45 -15.36 10.50 -184.56 -1.94 -17.30 14 4 C 0.00 -0.07 7.88 130.59 1.03 0.96 14 5 Br 0.08 1.90 34.12 -20.37 -0.70 1.20 14 6 S 0.26 8.50 22.33 -56.49 -1.26 7.24 14 7 C -0.27 -10.87 6.51 24.08 0.16 -10.71 14 8 C 0.50 24.33 7.73 86.39 0.67 24.99 14 9 O -0.61 -32.59 13.89 -4.46 -0.06 -32.65 14 10 N -0.54 -27.72 5.28 -310.78 -1.64 -29.36 14 11 C -0.33 -17.84 9.68 84.08 0.81 -17.03 14 12 H 0.10 5.37 7.15 -2.91 -0.02 5.35 14 13 C -0.01 -0.40 5.50 84.94 0.47 0.07 14 14 N -0.90 -45.97 13.05 21.67 0.28 -45.69 14 15 Si 1.00 39.91 29.55 68.60 2.03 41.94 14 16 H -0.27 -10.32 7.11 99.48 0.71 -9.61 14 17 H -0.27 -10.06 7.11 99.48 0.71 -9.35 14 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 14 19 H 0.08 2.62 8.14 -2.39 -0.02 2.60 14 20 H 0.08 3.19 6.05 -2.39 -0.01 3.17 14 21 H 0.09 2.54 8.14 -2.39 -0.02 2.52 14 22 H 0.39 19.15 7.08 -92.71 -0.66 18.50 14 23 H 0.29 13.45 8.31 -92.71 -0.77 12.68 14 Total: -1.00 -59.32 248.76 1.45 -57.87 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.62 Total: 15.93 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.12 Total: 0.82 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -3.29 Total: -92.35 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.06 Total: -32.65 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 16 Polarization: 8.50 SS G_CDS: -1.26 Total: 7.24 kcal Atomic # 35 Polarization: 1.90 SS G_CDS: -0.70 Total: 1.20 kcal Total: -59.32 1.45 -57.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816954891.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.231 kcal (2) G-P(sol) polarization free energy of solvation -59.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds