Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.70618 * 124.51250 * 2 1 4 4 C 1.75825 * 91.58050 * 179.73444 * 3 2 1 5 5 C 1.46321 * 125.46114 * 179.97438 * 4 3 2 6 6 O 1.21667 * 120.00468 * 180.02562 * 5 4 3 7 7 O 1.34902 * 119.99727 * 0.02562 * 5 4 3 8 8 C 1.34861 * 116.99891 * 180.02562 * 7 5 4 9 9 H 1.07998 * 119.99850 * 359.97438 * 8 7 5 10 10 C 1.38776 * 120.00042 * 180.02562 * 8 7 5 11 11 N 1.31439 * 119.99992 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00178 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47053 * 89.99815 * 12 10 8 14 14 H 1.48499 * 109.47085 * 210.00231 * 12 10 8 15 15 H 1.48502 * 109.46864 * 329.99904 * 12 10 8 16 16 C 1.36838 * 109.08320 * 0.02562 * 4 3 2 17 17 C 1.33929 * 124.51786 * 179.69875 * 2 1 3 18 18 Br 1.89099 * 122.44909 * 0.24262 * 17 2 1 19 19 H 1.08992 * 109.47347 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47106 * 120.02879 * 1 2 3 21 21 H 1.09002 * 109.46650 * 240.02313 * 1 2 3 22 22 H 0.97001 * 120.00031 * 179.97438 * 11 10 8 23 23 H 1.07993 * 123.37057 * 180.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4736 1.4059 0.0000 4 6 3.9494 0.4500 0.0081 5 6 5.3097 0.9889 0.0114 6 8 6.2634 0.2333 0.0166 7 8 5.5066 2.3234 0.0086 8 6 6.7847 2.7538 0.0113 9 1 7.5949 2.0397 0.0159 10 6 7.0588 4.1142 0.0092 11 7 8.3045 4.5336 0.0124 12 14 5.6574 5.3494 0.0020 13 1 5.2815 5.6797 1.4001 14 1 6.0901 6.5847 -0.6994 15 1 4.4867 4.7655 -0.7007 16 6 3.6218 -0.8785 0.0098 17 6 2.2659 -1.1035 0.0058 18 35 1.5260 -2.8437 0.0082 19 1 -0.3633 1.0276 -0.0005 20 1 -0.3633 -0.5143 -0.8897 21 1 -0.3633 -0.5135 0.8902 22 1 8.4961 5.4845 0.0106 23 1 4.3553 -1.6712 0.0150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820847497.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -48.513926 kcal Electronic energy + Delta-G solvation = -12941.847899 eV Core-core repulsion = 10314.574085 eV Total energy + Delta-G solvation = -2627.273814 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.940 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.33371 -37.98419 -35.41003 -32.49551 -32.17529 -30.80170 -27.49818 -25.33088 -23.53550 -21.12798 -18.70873 -18.07304 -17.83248 -15.97958 -15.48568 -15.02329 -14.47266 -14.23642 -13.82630 -13.23417 -12.70311 -12.41424 -12.40443 -12.31731 -11.80264 -11.42761 -10.90964 -10.78538 -10.57494 -10.48572 -10.28051 -9.84196 -9.42845 -8.81602 -8.61308 -8.40835 -6.51625 -4.22366 0.52753 1.16963 1.69034 2.19913 2.28064 3.12177 3.16407 3.28041 3.67413 3.96785 4.13823 4.66705 4.96954 5.00388 5.34847 5.48164 5.68544 5.72009 5.79853 6.19836 6.40045 7.55435 7.89521 8.46469 8.84555 9.49426 10.55610 Molecular weight = 289.94amu Principal moments of inertia in cm(-1) A = 0.039560 B = 0.004909 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.623313 B = 5702.985451 C = 6395.464335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.199 4.199 3 S 0.270 5.730 4 C -0.204 4.204 5 C 0.472 3.528 6 O -0.524 6.524 7 O -0.241 6.241 8 C -0.371 4.371 9 H 0.114 0.886 10 C 0.067 3.933 11 N -0.862 5.862 12 Si 0.900 3.100 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.257 1.257 16 C -0.060 4.060 17 C -0.117 4.117 18 Br -0.035 7.035 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.283 0.717 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.767 -9.426 -0.048 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.321 4.321 3 S 0.538 5.462 4 C -0.324 4.324 5 C 0.318 3.682 6 O -0.421 6.421 7 O -0.150 6.150 8 C -0.447 4.447 9 H 0.131 0.869 10 C -0.138 4.138 11 N -0.500 5.500 12 Si 0.725 3.275 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.181 1.181 16 C -0.091 4.091 17 C -0.210 4.210 18 Br 0.048 6.952 19 H 0.091 0.909 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.950 -8.492 -0.054 20.766 hybrid contribution 0.184 -0.608 0.014 0.635 sum -18.766 -9.100 -0.040 20.856 Atomic orbital electron populations 1.20426 0.86835 1.03287 1.03686 1.24300 1.02152 0.97815 1.07863 1.83460 0.92898 1.04487 1.65392 1.23772 0.96147 0.96734 1.15702 1.18922 0.86498 0.82192 0.80601 1.90748 1.41885 1.59123 1.50294 1.83556 1.32988 1.21896 1.76549 1.20734 0.79551 0.93444 1.50933 0.86856 1.24572 0.97242 0.96608 0.95402 1.69594 1.17896 1.16658 1.45861 0.86275 0.82093 0.79840 0.79301 1.19466 1.20345 1.18051 1.20398 0.94103 0.95625 0.99001 1.20256 0.94288 0.91598 1.14818 1.96615 1.83985 1.16654 1.97933 0.90898 0.89968 0.89962 0.90673 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.61 36.00 0.35 -0.43 14 2 C -0.20 -2.59 6.28 -35.83 -0.23 -2.81 14 3 S 0.27 4.12 22.85 -107.50 -2.46 1.66 14 4 C -0.20 -3.92 6.45 -36.84 -0.24 -4.16 14 5 C 0.47 11.53 7.86 33.98 0.27 11.80 14 6 O -0.52 -14.26 16.09 -19.40 -0.31 -14.58 14 7 O -0.24 -6.35 8.43 -22.12 -0.19 -6.54 14 8 C -0.37 -10.85 10.11 30.93 0.31 -10.54 14 9 H 0.11 3.64 7.09 -52.49 -0.37 3.27 14 10 C 0.07 1.88 5.49 -17.52 -0.10 1.78 14 11 N -0.86 -24.84 13.96 55.48 0.77 -24.06 14 12 Si 0.90 20.66 28.62 -169.99 -4.86 15.80 14 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 14 14 H -0.28 -6.13 7.11 56.52 0.40 -5.72 14 15 H -0.26 -5.71 7.11 56.52 0.40 -5.31 14 16 C -0.06 -1.01 9.86 -40.38 -0.40 -1.40 14 17 C -0.12 -1.67 6.14 -41.38 -0.25 -1.92 14 18 Br -0.04 -0.42 33.19 -68.01 -2.26 -2.68 14 19 H 0.07 0.57 8.11 -51.93 -0.42 0.14 14 20 H 0.08 0.69 8.14 -51.93 -0.42 0.26 14 21 H 0.08 0.69 8.14 -51.93 -0.42 0.26 14 22 H 0.28 7.40 8.31 -40.82 -0.34 7.06 14 23 H 0.16 2.65 8.06 -52.49 -0.42 2.23 14 LS Contribution 254.11 15.07 3.83 3.83 Total: -1.00 -30.69 254.11 -6.95 -37.65 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -1.20 Total: -3.40 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.29 Total: -7.68 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.77 Total: -24.06 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.50 Total: -21.11 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.86 Total: 15.80 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.46 Total: 1.66 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.26 Total: -2.68 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.69 -6.95 -37.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820847497.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.867 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds