Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.70618 * 124.51250 * 2 1 4 4 C 1.75825 * 91.58050 * 179.73444 * 3 2 1 5 5 C 1.46321 * 125.46114 * 179.97438 * 4 3 2 6 6 O 1.21667 * 120.00468 * 180.02562 * 5 4 3 7 7 O 1.34902 * 119.99727 * 0.02562 * 5 4 3 8 8 C 1.34861 * 116.99891 * 180.02562 * 7 5 4 9 9 H 1.07998 * 119.99850 * 359.97438 * 8 7 5 10 10 C 1.38776 * 120.00042 * 180.02562 * 8 7 5 11 11 N 1.31439 * 119.99992 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00178 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47053 * 89.99815 * 12 10 8 14 14 H 1.48499 * 109.47085 * 210.00231 * 12 10 8 15 15 H 1.48502 * 109.46864 * 329.99904 * 12 10 8 16 16 C 1.36838 * 109.08320 * 0.02562 * 4 3 2 17 17 C 1.33929 * 124.51786 * 179.69875 * 2 1 3 18 18 Br 1.89099 * 122.44909 * 0.24262 * 17 2 1 19 19 H 1.08992 * 109.47347 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47106 * 120.02879 * 1 2 3 21 21 H 1.09002 * 109.46650 * 240.02313 * 1 2 3 22 22 H 0.97001 * 120.00031 * 179.97438 * 11 10 8 23 23 H 1.07993 * 123.37057 * 180.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4736 1.4059 0.0000 4 6 3.9494 0.4500 0.0081 5 6 5.3097 0.9889 0.0114 6 8 6.2634 0.2333 0.0166 7 8 5.5066 2.3234 0.0086 8 6 6.7847 2.7538 0.0113 9 1 7.5949 2.0397 0.0159 10 6 7.0588 4.1142 0.0092 11 7 8.3045 4.5336 0.0124 12 14 5.6574 5.3494 0.0020 13 1 5.2815 5.6797 1.4001 14 1 6.0901 6.5847 -0.6994 15 1 4.4867 4.7655 -0.7007 16 6 3.6218 -0.8785 0.0098 17 6 2.2659 -1.1035 0.0058 18 35 1.5260 -2.8437 0.0082 19 1 -0.3633 1.0276 -0.0005 20 1 -0.3633 -0.5143 -0.8897 21 1 -0.3633 -0.5135 0.8902 22 1 8.4961 5.4845 0.0106 23 1 4.3553 -1.6712 0.0150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820847497.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -67.478516 kcal Electronic energy + Delta-G solvation = -12942.670265 eV Core-core repulsion = 10314.574085 eV Total energy + Delta-G solvation = -2628.096180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.940 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.26365 -39.31593 -37.42177 -34.58997 -33.38946 -31.82645 -29.06591 -27.06301 -24.83828 -22.75516 -20.42148 -19.96999 -19.40937 -17.48811 -17.18122 -16.92484 -16.17508 -15.40916 -15.34600 -14.58231 -14.32111 -14.14212 -13.62453 -13.58263 -13.14944 -12.90433 -12.49240 -12.35953 -12.07731 -11.90372 -11.81445 -11.43410 -11.28912 -10.89401 -9.88828 -9.58822 -8.61150 -6.47134 -0.78887 0.02430 0.38789 0.87275 1.10064 1.31217 1.36363 1.51899 1.85682 2.19121 2.27179 2.87204 3.62756 3.93284 4.11085 4.41697 4.59073 4.69173 4.79585 4.94056 5.14582 5.37524 5.80520 6.36255 6.71882 7.40446 8.51164 Molecular weight = 289.94amu Principal moments of inertia in cm(-1) A = 0.039560 B = 0.004909 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.623313 B = 5702.985451 C = 6395.464335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.156 4.156 3 S 0.308 5.692 4 C -0.269 4.269 5 C 0.481 3.519 6 O -0.565 6.565 7 O -0.245 6.245 8 C -0.408 4.408 9 H 0.060 0.940 10 C 0.020 3.980 11 N -0.908 5.908 12 Si 0.973 3.027 13 H -0.254 1.254 14 H -0.260 1.260 15 H -0.244 1.244 16 C -0.032 4.032 17 C -0.144 4.144 18 Br -0.006 7.006 19 H 0.095 0.905 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.293 0.707 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.261 -9.208 -0.064 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.279 4.279 3 S 0.575 5.425 4 C -0.388 4.388 5 C 0.329 3.671 6 O -0.463 6.463 7 O -0.154 6.154 8 C -0.484 4.484 9 H 0.078 0.922 10 C -0.181 4.181 11 N -0.547 5.547 12 Si 0.791 3.209 13 H -0.179 1.179 14 H -0.184 1.184 15 H -0.167 1.167 16 C -0.066 4.066 17 C -0.235 4.235 18 Br 0.078 6.922 19 H 0.114 0.886 20 H 0.119 0.881 21 H 0.119 0.881 22 H 0.103 0.897 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.431 -8.287 -0.069 24.853 hybrid contribution 1.387 -0.985 0.021 1.701 sum -22.044 -9.272 -0.048 23.914 Atomic orbital electron populations 1.20744 0.83349 1.05476 1.05357 1.24923 1.04099 0.96378 1.02535 1.83264 0.90323 1.04401 1.64486 1.23382 0.95214 0.98445 1.21736 1.19893 0.88459 0.81359 0.77409 1.90707 1.44287 1.59807 1.51525 1.83549 1.30969 1.22814 1.78076 1.20353 0.79710 0.93520 1.54779 0.92214 1.25577 1.00504 0.98159 0.93835 1.69684 1.20313 1.17824 1.46880 0.85230 0.78286 0.76970 0.80376 1.17860 1.18418 1.16729 1.20563 0.95581 0.94614 0.95799 1.20288 0.93204 0.93730 1.16306 1.96649 1.83124 1.14527 1.97948 0.88622 0.88071 0.88062 0.89729 0.82998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.61 71.23 0.68 -0.48 14 2 C -0.16 -3.43 6.28 24.70 0.16 -3.28 14 3 S 0.31 8.54 22.85 -56.49 -1.29 7.25 14 4 C -0.27 -10.31 6.45 24.05 0.16 -10.16 14 5 C 0.48 24.57 7.86 69.92 0.55 25.12 14 6 O -0.57 -32.89 16.09 19.29 0.31 -32.58 14 7 O -0.25 -13.37 8.43 9.53 0.08 -13.29 14 8 C -0.41 -25.36 10.11 67.95 0.69 -24.67 14 9 H 0.06 4.23 7.09 -2.91 -0.02 4.21 14 10 C 0.02 1.18 5.49 84.88 0.47 1.64 14 11 N -0.91 -54.44 13.96 21.63 0.30 -54.14 14 12 Si 0.97 42.31 28.62 68.60 1.96 44.27 14 13 H -0.25 -10.39 7.11 99.48 0.71 -9.68 14 14 H -0.26 -10.45 7.11 99.48 0.71 -9.74 14 15 H -0.24 -10.01 7.11 99.48 0.71 -9.30 14 16 C -0.03 -1.05 9.86 21.75 0.21 -0.84 14 17 C -0.14 -3.70 6.14 21.10 0.13 -3.57 14 18 Br -0.01 -0.12 33.19 -20.37 -0.68 -0.80 14 19 H 0.09 0.89 8.11 -2.39 -0.02 0.87 14 20 H 0.10 1.08 8.14 -2.39 -0.02 1.06 14 21 H 0.10 1.08 8.14 -2.39 -0.02 1.06 14 22 H 0.29 15.69 8.31 -92.71 -0.77 14.92 14 23 H 0.15 5.10 8.06 -2.91 -0.02 5.08 14 Total: -1.00 -72.02 254.11 4.98 -67.04 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: 1.25 Total: -1.52 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.04 Total: -16.23 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.30 Total: -54.14 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: 0.39 Total: -45.87 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.96 Total: 44.27 kcal Atomic # 16 Polarization: 8.54 SS G_CDS: -1.29 Total: 7.25 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.68 Total: -0.80 kcal Total: -72.02 4.98 -67.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820847497.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.437 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds