Wall clock time and date at job start Tue Mar 31 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00535 * 2 1 4 4 H 1.48497 * 109.47248 * 270.00429 * 3 2 1 5 5 H 1.48509 * 109.46832 * 29.99906 * 3 2 1 6 6 H 1.48498 * 109.47258 * 149.99825 * 3 2 1 7 7 C 1.37883 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00387 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99681 * 179.97438 * 10 9 7 12 12 O 1.21694 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.46578 * 119.99478 * 179.97438 * 11 10 9 14 14 S 1.75835 * 125.46186 * 359.95879 * 13 11 10 15 15 C 1.70618 * 91.56467 * 180.02562 * 14 13 11 16 16 C 1.33818 * 110.95369 * 359.73333 * 15 14 13 17 17 C 1.36650 * 125.45471 * 180.02562 * 13 11 10 18 18 S 1.76202 * 123.35301 * 359.96539 * 17 13 11 19 19 N 1.65597 * 107.21658 * 295.00189 * 18 17 13 20 20 O 1.42101 * 106.40266 * 181.46209 * 18 17 13 21 21 O 1.42097 * 106.40140 * 48.54173 * 18 17 13 22 22 H 0.97002 * 119.99514 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47417 * 59.99688 * 9 7 2 24 24 H 1.09003 * 109.46774 * 299.99841 * 9 7 2 25 25 H 0.96993 * 119.99672 * 359.97438 * 10 9 7 26 26 H 1.07999 * 124.52082 * 180.02562 * 15 14 13 27 27 H 1.07995 * 122.45435 * 180.27807 * 16 15 14 28 28 H 0.97001 * 120.00224 * 150.00464 * 19 18 17 29 29 H 0.97005 * 120.00050 * 329.72234 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5571 -5.1058 0.0011 13 6 2.7061 -5.9976 0.0005 14 16 4.4575 -5.8423 -0.0019 15 6 4.6546 -7.5370 -0.0019 16 6 3.4686 -8.1567 0.0056 17 6 2.3751 -7.3234 0.0004 18 16 0.7125 -7.9068 0.0019 19 7 0.0301 -7.4387 1.4363 20 8 0.7851 -9.3255 0.0362 21 8 0.0340 -7.1878 -1.0188 22 1 -0.4849 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 3.1565 -3.4355 0.0002 26 1 5.6091 -8.0422 -0.0027 27 1 3.3769 -9.2327 0.0114 28 1 -0.9218 -7.2583 1.4846 29 1 0.5815 -7.3488 2.2293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652363.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:19 Heat of formation + Delta-G solvation = -76.202894 kcal Electronic energy + Delta-G solvation = -18727.518468 eV Core-core repulsion = 15483.641208 eV Total energy + Delta-G solvation = -3243.877260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.023 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.39376 -37.60762 -36.71868 -35.49202 -34.41612 -32.89167 -32.50836 -30.28007 -27.55657 -25.41519 -22.91211 -20.86353 -20.67827 -18.95511 -18.72773 -17.32856 -17.06995 -16.42342 -15.98990 -15.37994 -15.14606 -14.96152 -14.78824 -14.19437 -14.10691 -13.27230 -13.08542 -12.72176 -12.12018 -11.97927 -11.93318 -11.81396 -11.60649 -11.44530 -11.07100 -10.96067 -10.82129 -10.40777 -10.16631 -9.55376 -9.49457 -9.37271 -8.96044 -8.84216 -8.09115 -6.24702 -4.32683 0.08452 0.60309 1.30863 1.64088 1.90547 3.19541 3.25546 3.27600 3.36439 3.45335 3.66358 3.88660 4.27473 4.55363 4.96366 5.08305 5.11832 5.27604 5.59661 5.74061 5.93265 6.23568 7.11625 7.12238 7.28991 7.38599 7.50713 7.84750 8.31827 8.54731 8.79447 9.33563 10.85252 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.004858 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.315891 B = 5762.190816 C = 6737.984772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.695 5.695 11 C 0.543 3.457 12 O -0.499 6.499 13 C -0.128 4.128 14 S 0.259 5.741 15 C -0.260 4.260 16 C -0.074 4.074 17 C -0.640 4.640 18 S 2.723 3.277 19 N -1.234 6.234 20 O -0.977 6.977 21 O -0.930 6.930 22 H 0.267 0.733 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.389 0.611 26 H 0.175 0.825 27 H 0.159 0.841 28 H 0.422 0.578 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.102 -14.142 3.435 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.343 5.343 11 C 0.324 3.676 12 O -0.377 6.377 13 C -0.253 4.253 14 S 0.526 5.474 15 C -0.398 4.398 16 C -0.103 4.103 17 C -0.740 4.740 18 S 2.806 3.194 19 N -0.907 5.907 20 O -0.966 6.966 21 O -0.920 6.920 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.222 0.778 26 H 0.192 0.808 27 H 0.176 0.824 28 H 0.253 0.747 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 8.800 -13.431 2.570 16.261 hybrid contribution 0.668 0.210 0.599 0.921 sum 9.468 -13.221 3.168 16.567 Atomic orbital electron populations 1.69966 1.06093 1.27508 1.48330 1.24936 0.94935 0.99466 0.94503 0.86393 0.79584 0.82496 0.78314 1.20375 1.20931 1.19727 1.21171 0.93276 0.90258 1.53985 0.91825 1.19294 0.88039 0.81246 0.98520 1.46413 1.11322 1.05525 1.71058 1.17178 0.87517 0.82584 0.80272 1.90948 1.13968 1.83604 1.49184 1.25260 0.99039 0.96804 1.04187 1.83168 0.98535 1.02781 1.62947 1.25408 1.03315 0.99408 1.11718 1.19598 0.89371 1.01440 0.99895 1.30558 1.25630 0.99401 1.18450 1.01097 0.72191 0.72950 0.73141 1.52808 1.20318 1.89837 1.27762 1.93577 1.86482 1.29916 1.86658 1.93669 1.70776 1.72365 1.55171 0.92283 0.94619 0.94725 0.77804 0.80766 0.82356 0.74741 0.76331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.19 13.29 55.43 0.74 -24.45 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.55 -14.31 9.28 -34.44 -0.32 -14.63 15 8 H 0.06 1.54 7.60 -52.49 -0.40 1.15 15 9 C 0.25 6.30 5.43 -5.19 -0.03 6.28 15 10 N -0.69 -14.11 5.54 -62.82 -0.35 -14.46 15 11 C 0.54 10.63 7.76 -12.90 -0.10 10.53 15 12 O -0.50 -11.13 12.47 -18.23 -0.23 -11.36 15 13 C -0.13 -1.99 6.45 -36.79 -0.24 -2.22 15 14 S 0.26 2.89 22.16 -107.50 -2.38 0.51 15 15 C -0.26 -2.57 10.92 29.18 0.32 -2.25 15 16 C -0.07 -0.86 9.70 -41.41 -0.40 -1.27 15 17 C -0.64 -9.17 5.94 -40.43 -0.24 -9.41 15 18 S 2.72 41.51 5.53 -107.50 -0.59 40.91 15 19 N -1.23 -15.13 8.65 60.35 0.52 -14.61 15 20 O -0.98 -15.70 17.41 -57.17 -1.00 -16.69 15 21 O -0.93 -18.47 15.57 -66.75 -1.04 -19.51 15 22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.39 6.76 7.43 -40.82 -0.30 6.46 15 26 H 0.17 1.13 8.06 -52.49 -0.42 0.71 15 27 H 0.16 1.58 7.78 -52.49 -0.41 1.17 15 28 H 0.42 4.77 8.96 -34.47 -0.31 4.46 15 29 H 0.41 3.97 8.96 -34.47 -0.31 3.66 15 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -34.80 285.80 -8.28 -43.08 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -2.13 Total: 8.38 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.11 Total: -11.30 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.91 Total: -53.52 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -2.26 Total: -47.57 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 44.40 SS G_CDS: -2.98 Total: 41.42 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.80 -8.28 -43.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652363.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.126 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds