Wall clock time and date at job start Tue Mar 31 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00535 * 2 1 4 4 H 1.48497 * 109.47248 * 270.00429 * 3 2 1 5 5 H 1.48509 * 109.46832 * 29.99906 * 3 2 1 6 6 H 1.48498 * 109.47258 * 149.99825 * 3 2 1 7 7 C 1.37883 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00387 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99681 * 179.97438 * 10 9 7 12 12 O 1.21694 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.46578 * 119.99478 * 179.97438 * 11 10 9 14 14 S 1.75835 * 125.46186 * 359.95879 * 13 11 10 15 15 C 1.70618 * 91.56467 * 180.02562 * 14 13 11 16 16 C 1.33818 * 110.95369 * 359.73333 * 15 14 13 17 17 C 1.36650 * 125.45471 * 180.02562 * 13 11 10 18 18 S 1.76202 * 123.35301 * 359.96539 * 17 13 11 19 19 N 1.65597 * 107.21658 * 295.00189 * 18 17 13 20 20 O 1.42101 * 106.40266 * 181.46209 * 18 17 13 21 21 O 1.42097 * 106.40140 * 48.54173 * 18 17 13 22 22 H 0.97002 * 119.99514 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47417 * 59.99688 * 9 7 2 24 24 H 1.09003 * 109.46774 * 299.99841 * 9 7 2 25 25 H 0.96993 * 119.99672 * 359.97438 * 10 9 7 26 26 H 1.07999 * 124.52082 * 180.02562 * 15 14 13 27 27 H 1.07995 * 122.45435 * 180.27807 * 16 15 14 28 28 H 0.97001 * 120.00224 * 150.00464 * 19 18 17 29 29 H 0.97005 * 120.00050 * 329.72234 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5571 -5.1058 0.0011 13 6 2.7061 -5.9976 0.0005 14 16 4.4575 -5.8423 -0.0019 15 6 4.6546 -7.5370 -0.0019 16 6 3.4686 -8.1567 0.0056 17 6 2.3751 -7.3234 0.0004 18 16 0.7125 -7.9068 0.0019 19 7 0.0301 -7.4387 1.4363 20 8 0.7851 -9.3255 0.0362 21 8 0.0340 -7.1878 -1.0188 22 1 -0.4849 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 3.1565 -3.4355 0.0002 26 1 5.6091 -8.0422 -0.0027 27 1 3.3769 -9.2327 0.0114 28 1 -0.9218 -7.2583 1.4846 29 1 0.5815 -7.3488 2.2293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652363.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:19 Heat of formation + Delta-G solvation = -105.928983 kcal Electronic energy + Delta-G solvation = -18728.807488 eV Core-core repulsion = 15483.641208 eV Total energy + Delta-G solvation = -3245.166280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.023 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86143 -38.71854 -38.02968 -36.82397 -36.22377 -34.44761 -33.96643 -31.47662 -29.32738 -26.69452 -24.68233 -22.32678 -21.80457 -20.34917 -19.96740 -18.48750 -18.26849 -18.15501 -17.19938 -16.87652 -16.73863 -16.40592 -16.20674 -15.70527 -15.10502 -14.66233 -14.54050 -14.07063 -13.76740 -13.71234 -13.19382 -13.10609 -12.97203 -12.88554 -12.71978 -12.58791 -12.22948 -11.91829 -11.49888 -11.29436 -11.06477 -10.81897 -10.37238 -10.03969 -9.77926 -8.29186 -6.45918 -1.02389 -0.55531 0.30590 0.71506 0.96618 1.44528 1.46525 1.57485 1.91115 2.13502 2.31308 2.43179 2.70596 3.06369 3.45645 3.79046 4.12950 4.18238 4.66622 4.82774 5.03363 5.09030 5.22895 5.28364 5.35576 5.57913 5.81253 6.36588 6.57532 6.67411 7.11396 7.29163 8.82704 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.004858 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.315891 B = 5762.190816 C = 6737.984772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.695 5.695 11 C 0.543 3.457 12 O -0.537 6.537 13 C -0.184 4.184 14 S 0.328 5.672 15 C -0.230 4.230 16 C -0.093 4.093 17 C -0.630 4.630 18 S 2.734 3.266 19 N -1.226 6.226 20 O -0.988 6.988 21 O -0.984 6.984 22 H 0.269 0.731 23 H -0.006 1.006 24 H 0.003 0.997 25 H 0.404 0.596 26 H 0.221 0.779 27 H 0.178 0.822 28 H 0.426 0.574 29 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.956 -14.605 3.983 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.345 5.345 11 C 0.327 3.673 12 O -0.417 6.417 13 C -0.309 4.309 14 S 0.596 5.404 15 C -0.369 4.369 16 C -0.120 4.120 17 C -0.735 4.735 18 S 2.820 3.180 19 N -0.903 5.903 20 O -0.978 6.978 21 O -0.974 6.974 22 H 0.078 0.922 23 H 0.012 0.988 24 H 0.021 0.979 25 H 0.240 0.760 26 H 0.237 0.763 27 H 0.195 0.805 28 H 0.257 0.743 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 12.685 -13.931 3.132 19.099 hybrid contribution -0.413 0.227 0.453 0.654 sum 12.271 -13.704 3.585 18.741 Atomic orbital electron populations 1.70128 1.08199 1.28623 1.49626 1.26016 0.95748 1.03748 0.93795 0.85185 0.78611 0.77068 0.78535 1.19815 1.21007 1.17709 1.21581 0.94349 0.90391 1.53342 0.89714 1.18706 0.88397 0.83362 0.95102 1.46047 1.11265 1.04979 1.72189 1.17674 0.87954 0.83090 0.78579 1.90918 1.16109 1.84335 1.50314 1.24699 1.01411 0.95384 1.09367 1.82954 0.93861 1.03420 1.60137 1.26014 1.04526 0.98857 1.07478 1.19805 0.89030 1.02232 1.00924 1.30357 1.25490 0.99476 1.18178 1.00367 0.72420 0.72357 0.72862 1.52546 1.20709 1.89596 1.27422 1.93557 1.86885 1.30422 1.86906 1.93610 1.72683 1.73417 1.57669 0.92196 0.98849 0.97917 0.76002 0.76253 0.80492 0.74255 0.74801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.29 21.45 0.28 -54.36 15 2 C 0.01 0.38 5.46 84.66 0.46 0.84 15 3 Si 0.98 41.07 29.54 68.60 2.03 43.10 15 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 7 C -0.56 -29.39 9.28 25.60 0.24 -29.15 15 8 H 0.08 3.99 7.60 -2.91 -0.02 3.97 15 9 C 0.27 14.16 5.43 85.63 0.46 14.62 15 10 N -0.69 -28.83 5.54 -470.89 -2.61 -31.45 15 11 C 0.54 21.85 7.76 86.42 0.67 22.52 15 12 O -0.54 -25.34 12.47 18.06 0.23 -25.11 15 13 C -0.18 -5.53 6.45 24.08 0.16 -5.37 15 14 S 0.33 6.12 22.16 -56.49 -1.25 4.87 15 15 C -0.23 -3.35 10.92 66.81 0.73 -2.62 15 16 C -0.09 -1.84 9.70 21.09 0.20 -1.64 15 17 C -0.63 -17.32 5.94 21.72 0.13 -17.19 15 18 S 2.73 84.89 5.53 -56.49 -0.31 84.58 15 19 N -1.23 -30.91 8.65 37.02 0.32 -30.59 15 20 O -0.99 -31.48 17.41 -128.00 -2.23 -33.71 15 21 O -0.98 -41.15 15.57 -118.85 -1.85 -43.00 15 22 H 0.27 14.84 8.31 -92.71 -0.77 14.07 15 23 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 15 24 H 0.00 0.17 8.14 -2.39 -0.02 0.15 15 25 H 0.40 13.79 7.43 -92.71 -0.69 13.10 15 26 H 0.22 1.25 8.06 -2.91 -0.02 1.23 15 27 H 0.18 2.87 7.78 -2.91 -0.02 2.85 15 28 H 0.43 10.16 8.96 -96.74 -0.87 9.29 15 29 H 0.42 8.20 8.96 -96.74 -0.87 7.33 15 Total: -1.00 -79.13 285.80 -3.52 -82.65 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -1.18 Total: 21.00 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.05 Total: -17.98 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -2.01 Total: -116.39 kcal Atomic # 8 Polarization: -97.98 SS G_CDS: -3.85 Total: -101.83 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 91.01 SS G_CDS: -1.56 Total: 89.45 kcal Total: -79.13 -3.52 -82.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652363.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.279 kcal (2) G-P(sol) polarization free energy of solvation -79.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds