Wall clock time and date at job start Tue Mar 31 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33839 * 124.49819 * 2 1 4 4 C 1.37502 * 115.11292 * 180.22807 * 3 2 1 5 5 Br 1.89099 * 123.38402 * 179.71521 * 4 3 2 6 6 C 1.36936 * 113.23009 * 359.54544 * 4 3 2 7 7 C 1.46229 * 125.47101 * 180.18094 * 6 4 3 8 8 O 1.21678 * 119.99294 * 0.25982 * 7 6 4 9 9 O 1.34914 * 120.00126 * 180.25436 * 7 6 4 10 10 C 1.34858 * 116.99447 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00760 * 0.02562 * 10 9 7 12 12 C 1.38786 * 119.99635 * 179.97438 * 10 9 7 13 13 N 1.31436 * 119.99672 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47221 * 90.00308 * 14 12 10 16 16 H 1.48504 * 109.46850 * 210.00454 * 14 12 10 17 17 H 1.48497 * 109.47191 * 330.00355 * 14 12 10 18 18 S 1.70605 * 124.49431 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.46868 * 90.00208 * 1 2 3 20 20 H 1.08996 * 109.47386 * 210.00476 * 1 2 3 21 21 H 1.08996 * 109.47441 * 330.00632 * 1 2 3 22 22 H 1.08002 * 122.44061 * 359.94820 * 3 2 1 23 23 H 0.97002 * 119.99852 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1030 0.0000 4 6 3.6216 0.8788 -0.0050 5 35 4.9057 2.2670 -0.0139 6 6 3.9493 -0.4508 0.0010 7 6 5.3087 -0.9896 0.0015 8 8 6.2625 -0.2341 0.0012 9 8 5.5052 -2.3244 0.0024 10 6 6.7832 -2.7549 0.0034 11 1 7.5936 -2.0411 0.0039 12 6 7.0570 -4.1155 0.0050 13 7 6.0707 -4.9843 0.0050 14 14 8.8272 -4.7120 0.0071 15 1 9.2951 -4.8688 1.4077 16 1 8.9097 -6.0197 -0.6917 17 1 9.6841 -3.7217 -0.6931 18 16 2.4732 -1.4061 0.0006 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3634 0.8900 0.5137 22 1 1.8420 2.0967 -0.0008 23 1 6.2621 -5.9353 0.0064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838456220.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:03 Heat of formation + Delta-G solvation = -43.915872 kcal Electronic energy + Delta-G solvation = -13032.620492 eV Core-core repulsion = 10405.546065 eV Total energy + Delta-G solvation = -2627.074427 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.940 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.05968 -37.70106 -35.11877 -32.30855 -32.18230 -29.93233 -27.59289 -25.27250 -22.92602 -21.53322 -18.39598 -18.00216 -17.45228 -15.81232 -15.13508 -14.77663 -14.38335 -13.96517 -13.89292 -13.01441 -12.60688 -12.45369 -12.37648 -11.70903 -11.62729 -11.24446 -10.67528 -10.50440 -10.46254 -10.28178 -9.95347 -9.92012 -8.77510 -8.67489 -8.41093 -8.14761 -6.53204 -4.13410 0.69317 1.46556 2.00901 2.44106 2.57475 3.11924 3.14969 3.21447 3.84488 3.86555 4.45234 4.88980 5.06861 5.24548 5.39850 5.46325 5.75490 5.89144 6.10759 6.30646 6.73616 7.29850 7.83873 8.61288 8.94736 9.72021 10.63929 Molecular weight = 289.94amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.006710 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.175386 B = 4172.123306 C = 5490.147232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.233 4.233 3 C -0.129 4.129 4 C -0.065 4.065 5 Br -0.009 7.009 6 C -0.182 4.182 7 C 0.448 3.552 8 O -0.519 6.519 9 O -0.205 6.205 10 C -0.366 4.366 11 H 0.101 0.899 12 C 0.040 3.960 13 N -0.855 5.855 14 Si 0.947 3.053 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.265 1.265 18 S 0.281 5.719 19 H 0.075 0.925 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.144 0.856 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 9.656 -0.043 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.354 4.354 3 C -0.160 4.160 4 C -0.159 4.159 5 Br 0.075 6.925 6 C -0.304 4.304 7 C 0.294 3.706 8 O -0.416 6.416 9 O -0.112 6.112 10 C -0.443 4.443 11 H 0.119 0.881 12 C -0.165 4.165 13 N -0.491 5.491 14 Si 0.771 3.229 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.189 1.189 18 S 0.549 5.451 19 H 0.093 0.907 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.162 0.838 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.514 8.557 -0.050 12.797 hybrid contribution 0.813 0.971 0.008 1.267 sum -8.701 9.529 -0.043 12.904 Atomic orbital electron populations 1.20296 0.87358 1.03170 1.02780 1.24272 1.01744 0.98955 1.10414 1.19537 0.90379 0.99905 1.06200 1.21065 0.94003 0.91928 1.08889 1.96644 1.55623 1.42858 1.97339 1.23858 0.97613 0.95690 1.13224 1.19201 0.86563 0.83303 0.81483 1.90780 1.41455 1.58988 1.50405 1.83925 1.32221 1.20060 1.75030 1.21367 0.80449 0.91700 1.50780 0.88140 1.25419 1.00440 0.94497 0.96138 1.69990 1.31786 1.02411 1.44896 0.85605 0.80015 0.78359 0.78886 1.19720 1.20194 1.18887 1.83598 0.91900 1.04560 1.65045 0.90680 0.91131 0.90665 0.83812 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.31 36.00 0.37 -0.37 14 2 C -0.23 -3.25 6.28 -35.85 -0.23 -3.47 14 3 C -0.13 -1.93 9.88 -41.39 -0.41 -2.34 14 4 C -0.06 -1.21 6.29 -40.32 -0.25 -1.47 14 5 Br -0.01 -0.17 31.69 -68.01 -2.16 -2.32 14 6 C -0.18 -3.87 6.45 -36.85 -0.24 -4.10 14 7 C 0.45 11.65 7.86 33.94 0.27 11.92 14 8 O -0.52 -14.18 13.97 -19.40 -0.27 -14.45 14 9 O -0.20 -5.88 9.59 -22.15 -0.21 -6.09 14 10 C -0.37 -10.71 9.65 30.93 0.30 -10.41 14 11 H 0.10 2.94 6.86 -52.49 -0.36 2.58 14 12 C 0.04 1.11 5.49 -17.52 -0.10 1.02 14 13 N -0.85 -24.37 13.67 55.49 0.76 -23.61 14 14 Si 0.95 20.89 29.55 -169.99 -5.02 15.87 14 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 16 H -0.28 -5.86 7.11 56.52 0.40 -5.45 14 17 H -0.26 -5.76 7.11 56.52 0.40 -5.36 14 18 S 0.28 4.82 22.86 -107.50 -2.46 2.36 14 19 H 0.07 0.63 8.14 -51.93 -0.42 0.21 14 20 H 0.07 0.61 8.14 -51.93 -0.42 0.19 14 21 H 0.07 0.61 8.14 -51.93 -0.42 0.18 14 22 H 0.14 1.77 8.06 -52.49 -0.42 1.34 14 23 H 0.27 7.08 8.31 -40.82 -0.34 6.74 14 LS Contribution 252.53 15.07 3.81 3.81 Total: -1.00 -31.63 252.53 -7.03 -38.66 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: -1.19 Total: -4.99 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.29 Total: -9.23 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.76 Total: -23.61 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.48 Total: -20.54 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -2.46 Total: 2.36 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.16 Total: -2.32 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.63 -7.03 -38.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838456220.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.257 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds