Wall clock time and date at job start Tue Mar 31 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33839 * 124.49819 * 2 1 4 4 C 1.37502 * 115.11292 * 180.22807 * 3 2 1 5 5 Br 1.89099 * 123.38402 * 179.71521 * 4 3 2 6 6 C 1.36936 * 113.23009 * 359.54544 * 4 3 2 7 7 C 1.46229 * 125.47101 * 180.18094 * 6 4 3 8 8 O 1.21678 * 119.99294 * 0.25982 * 7 6 4 9 9 O 1.34914 * 120.00126 * 180.25436 * 7 6 4 10 10 C 1.34858 * 116.99447 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00760 * 0.02562 * 10 9 7 12 12 C 1.38786 * 119.99635 * 179.97438 * 10 9 7 13 13 N 1.31436 * 119.99672 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47221 * 90.00308 * 14 12 10 16 16 H 1.48504 * 109.46850 * 210.00454 * 14 12 10 17 17 H 1.48497 * 109.47191 * 330.00355 * 14 12 10 18 18 S 1.70605 * 124.49431 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.46868 * 90.00208 * 1 2 3 20 20 H 1.08996 * 109.47386 * 210.00476 * 1 2 3 21 21 H 1.08996 * 109.47441 * 330.00632 * 1 2 3 22 22 H 1.08002 * 122.44061 * 359.94820 * 3 2 1 23 23 H 0.97002 * 119.99852 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1030 0.0000 4 6 3.6216 0.8788 -0.0050 5 35 4.9057 2.2670 -0.0139 6 6 3.9493 -0.4508 0.0010 7 6 5.3087 -0.9896 0.0015 8 8 6.2625 -0.2341 0.0012 9 8 5.5052 -2.3244 0.0024 10 6 6.7832 -2.7549 0.0034 11 1 7.5936 -2.0411 0.0039 12 6 7.0570 -4.1155 0.0050 13 7 6.0707 -4.9843 0.0050 14 14 8.8272 -4.7120 0.0071 15 1 9.2951 -4.8688 1.4077 16 1 8.9097 -6.0197 -0.6917 17 1 9.6841 -3.7217 -0.6931 18 16 2.4732 -1.4061 0.0006 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3634 0.8900 0.5137 22 1 1.8420 2.0967 -0.0008 23 1 6.2621 -5.9353 0.0064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838456220.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:03 Heat of formation + Delta-G solvation = -63.482471 kcal Electronic energy + Delta-G solvation = -13033.468964 eV Core-core repulsion = 10405.546065 eV Total energy + Delta-G solvation = -2627.922899 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.940 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.01731 -39.14595 -37.14138 -34.34451 -33.48766 -31.37584 -29.03732 -27.19010 -24.24958 -23.19785 -20.02551 -19.99428 -19.15637 -17.37953 -16.92652 -16.70538 -16.19668 -15.47785 -15.08081 -14.45300 -14.03318 -13.77336 -13.60126 -13.56380 -13.05493 -12.81773 -12.39462 -12.18462 -12.08337 -11.91899 -11.67135 -11.59903 -10.72341 -10.59172 -9.77913 -9.54770 -8.58187 -6.34066 -0.76836 0.02183 0.69598 1.09935 1.11904 1.33959 1.40383 1.51386 1.96598 2.06763 2.64404 2.97104 3.79940 4.01651 4.39036 4.49608 4.78953 4.85706 4.92525 5.05553 5.15458 5.26954 5.77705 6.54422 6.85943 7.65790 8.62190 Molecular weight = 289.94amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.006710 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.175386 B = 4172.123306 C = 5490.147232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.184 4.184 3 C -0.144 4.144 4 C -0.043 4.043 5 Br -0.010 7.010 6 C -0.254 4.254 7 C 0.453 3.547 8 O -0.544 6.544 9 O -0.233 6.233 10 C -0.415 4.415 11 H 0.085 0.915 12 C -0.002 4.002 13 N -0.895 5.895 14 Si 1.020 2.980 15 H -0.260 1.260 16 H -0.258 1.258 17 H -0.264 1.264 18 S 0.284 5.716 19 H 0.098 0.902 20 H 0.084 0.916 21 H 0.103 0.897 22 H 0.181 0.819 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.927 10.449 -0.036 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.305 4.305 3 C -0.173 4.173 4 C -0.140 4.140 5 Br 0.075 6.925 6 C -0.375 4.375 7 C 0.300 3.700 8 O -0.442 6.442 9 O -0.142 6.142 10 C -0.490 4.490 11 H 0.103 0.897 12 C -0.203 4.203 13 N -0.532 5.532 14 Si 0.838 3.162 15 H -0.184 1.184 16 H -0.182 1.182 17 H -0.188 1.188 18 S 0.552 5.448 19 H 0.116 0.884 20 H 0.103 0.897 21 H 0.122 0.878 22 H 0.199 0.801 23 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.586 9.355 -0.042 14.891 hybrid contribution 1.156 0.956 0.003 1.500 sum -10.429 10.312 -0.039 14.666 Atomic orbital electron populations 1.20614 0.83337 1.05311 1.04864 1.24937 1.03837 0.96787 1.04940 1.19850 0.88511 1.02025 1.06911 1.21556 0.95700 0.90940 1.05784 1.96645 1.56497 1.42275 1.97114 1.23612 0.96844 0.97390 1.19696 1.20020 0.88524 0.82470 0.78936 1.90721 1.43235 1.59244 1.50976 1.83944 1.32020 1.21455 1.76778 1.21497 0.80587 0.92493 1.54458 0.89736 1.26563 1.05368 0.93776 0.94600 1.70063 1.34147 1.03041 1.45970 0.84599 0.73833 0.78196 0.79571 1.18424 1.18190 1.18832 1.83568 0.90630 1.05954 1.64662 0.88352 0.89691 0.87811 0.80130 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.31 71.24 0.73 -0.39 14 2 C -0.18 -4.42 6.28 24.68 0.15 -4.26 14 3 C -0.14 -3.81 9.88 21.10 0.21 -3.60 14 4 C -0.04 -1.57 6.29 21.79 0.14 -1.44 14 5 Br -0.01 -0.36 31.69 -20.37 -0.65 -1.01 14 6 C -0.25 -10.95 6.45 24.04 0.16 -10.80 14 7 C 0.45 24.65 7.86 69.90 0.55 25.19 14 8 O -0.54 -31.11 13.97 19.26 0.27 -30.84 14 9 O -0.23 -14.14 9.59 9.43 0.09 -14.05 14 10 C -0.41 -25.52 9.65 67.95 0.66 -24.86 14 11 H 0.08 5.28 6.86 -2.91 -0.02 5.26 14 12 C 0.00 -0.12 5.49 84.88 0.47 0.35 14 13 N -0.90 -52.52 13.67 21.63 0.30 -52.23 14 14 Si 1.02 43.56 29.55 68.60 2.03 45.58 14 15 H -0.26 -10.50 7.11 99.48 0.71 -9.79 14 16 H -0.26 -10.12 7.11 99.48 0.71 -9.42 14 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 14 18 S 0.28 9.45 22.86 -56.49 -1.29 8.16 14 19 H 0.10 1.06 8.14 -2.38 -0.02 1.04 14 20 H 0.08 1.02 8.14 -2.39 -0.02 1.00 14 21 H 0.10 0.98 8.14 -2.39 -0.02 0.96 14 22 H 0.18 3.51 8.06 -2.91 -0.02 3.49 14 23 H 0.28 14.86 8.31 -92.71 -0.77 14.09 14 Total: -1.00 -73.04 252.53 5.06 -67.99 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: 1.25 Total: -3.80 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 3.06 Total: -19.80 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.30 Total: -52.23 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: 0.36 Total: -44.89 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 9.45 SS G_CDS: -1.29 Total: 8.16 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -0.65 Total: -1.01 kcal Total: -73.04 5.06 -67.99 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838456220.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.506 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds